Cc_v2.0_19519.1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of Cc_v2.0_19519.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8B8K3G9|A0A8B8K3G9_ABRPR (Uncharacterized protein LOC113852166 OS=Abrus precatorius OX=3816 GN=LOC113852166 PE=3 SV=1) HSP 1 Score: 230.72 bits (587), Expect = 1.505e-74 Identity = 126/167 (75.45%), Postives = 134/167 (80.24%), Query Frame = 0
Query: 24 DQGVFLNK------------DFDEEDVRSVANGRDDYGQKTTRAFKESCDSSSACHLPVALRKIPRANTT--APLVKGSSAPMDVPDWSKIYGKSCKKGSRGDVGVSNKGDDDDDDEMIPPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNAVLTKTGFIE 176
DQGVFLNK +FDEEDV SV N R + G KTTRA KES SSSA LP A RKIPRANT A LV+GSSAPMD+PDWSKIYGK+CKKGSR D GV NKGDD+DDD M+PPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNA+LTKTGFIE
Sbjct: 3 DQGVFLNKSWGFGGRAMEDKEFDEEDVWSVNNERVESGPKTTRACKESSGSSSAWRLPSAPRKIPRANTASDASLVQGSSAPMDIPDWSKIYGKNCKKGSRDD-GVCNKGDDEDDD-MVPPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNAILTKTGFIE 167
BLAST of Cc_v2.0_19519.1 vs. ExPASy TrEMBL (2024)
Match: tr|V7AHJ7|V7AHJ7_PHAVU (Senescence regulator OS=Phaseolus vulgaris OX=3885 GN=PHAVU_011G151500g PE=3 SV=1) HSP 1 Score: 219.935 bits (559), Expect = 1.671e-70 Identity = 115/153 (75.16%), Postives = 123/153 (80.39%), Query Frame = 0
Query: 30 NKDFDEEDVRSVANGRDDYGQKTTRAFKESCDSSSACHLPVALRKIPRANTT------APLVKGSSAPMDVPDWSKIYGKSCKKGSRGDVGVSNKGDDDDDDEMIPPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNAVLTKTGFIE 176
+KD DE DV SV +DD QKTTRA KESC SSSA LP A RKI RAN+ APL+KGSS PMDVPDWSKIYGKSC KGSR D G NKG DD+DD+M+PPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNA+L KTGFIE
Sbjct: 3 DKDLDE-DVWSVEYQKDDSAQKTTRACKESCGSSSAWRLPAATRKIARANSNTPPSSDAPLLKGSSEPMDVPDWSKIYGKSCTKGSR-DAGACNKGGDDEDDDMVPPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNAILAKTGFIE 153
BLAST of Cc_v2.0_19519.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0S3S3P4|A0A0S3S3P4_PHAAN (Senescence regulator S40 OS=Vigna angularis var. angularis OX=157739 GN=Vigan.05G083000 PE=3 SV=1) HSP 1 Score: 215.312 bits (547), Expect = 2.260e-68 Identity = 113/157 (71.97%), Postives = 125/157 (79.62%), Query Frame = 0
Query: 26 GVFLNKDFDEEDVRSVANGRDDYGQKTTRAFKESCDSSSACHLPVALRKIPRANTT------APLVKGSSAPMDVPDWSKIYGKSCKKGSRGDVGVSNKGDDDDDDEMIPPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNAVLTKTGFIE 176
G NKDFDE DV SV +DD TTRA KESC SSS+ LP A RKIPRA++ APL+KGSS PMD+PDWSKIYGKSCKKGS+ D G +KG DD+DD+M+PPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNA+L KTGFIE
Sbjct: 17 GAMGNKDFDE-DVWSVDYEKDDSAPNTTRACKESCGSSSSWRLPTATRKIPRASSNTPPSSDAPLLKGSSEPMDIPDWSKIYGKSCKKGSKDD-GSCSKGGDDEDDDMVPPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNAILAKTGFIE 171
BLAST of Cc_v2.0_19519.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0L9VFG6|A0A0L9VFG6_PHAAN (Senescence regulator S40 OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0069100 PE=3 SV=1) HSP 1 Score: 215.312 bits (547), Expect = 2.260e-68 Identity = 113/157 (71.97%), Postives = 125/157 (79.62%), Query Frame = 0
Query: 26 GVFLNKDFDEEDVRSVANGRDDYGQKTTRAFKESCDSSSACHLPVALRKIPRANTT------APLVKGSSAPMDVPDWSKIYGKSCKKGSRGDVGVSNKGDDDDDDEMIPPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNAVLTKTGFIE 176
G NKDFDE DV SV +DD TTRA KESC SSS+ LP A RKIPRA++ APL+KGSS PMD+PDWSKIYGKSCKKGS+ D G +KG DD+DD+M+PPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNA+L KTGFIE
Sbjct: 17 GAMGNKDFDE-DVWSVDYEKDDSAPNTTRACKESCGSSSSWRLPTATRKIPRASSNTPPSSDAPLLKGSSEPMDIPDWSKIYGKSCKKGSKDD-GSCSKGGDDEDDDMVPPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNAILAKTGFIE 171
BLAST of Cc_v2.0_19519.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445I7L5|A0A445I7L5_GLYSO (Senescence regulator S40 OS=Glycine soja OX=3848 GN=D0Y65_031284 PE=3 SV=1) HSP 1 Score: 209.92 bits (533), Expect = 4.602e-66 Identity = 130/184 (70.65%), Postives = 138/184 (75.00%), Query Frame = 0
Query: 21 FSLDQGVFLNK------------DFDEEDVRSVANGRDDYGQKTTRAFKESC---DSSSACHLPVALRKIPRANTTA---------PLVKGSS-APMDVPDWSKIYGKSCKKGSRGDVGVSNKG---DDDDDDEMIPPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNAVLTKTGFIE 176
+ D+GVFLNK DFDEEDV SVAN DD G++TTRA KESC SSSA LP A RKIPRAN A PLVKGSS APMD+PDWSKIYGKSCKKGS D G SNKG DDDDDD+M+PPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNA+LTKTGFIE
Sbjct: 1 MTSDRGVFLNKSWGVGGREMKDRDFDEEDVWSVAN--DDSGKETTRACKESCGSSSSSSAWRLPAAPRKIPRANNNANPLPAASDAPLVKGSSSAPMDIPDWSKIYGKSCKKGSTADDGASNKGGDDDDDDDDDMVPPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNAILTKTGFIE 182
BLAST of Cc_v2.0_19519.1 vs. ExPASy TrEMBL (2024)
Match: tr|I1M0Z7|I1M0Z7_SOYBN (Senescence regulator OS=Glycine max OX=3847 GN=GLYMA_13G204600 PE=3 SV=1) HSP 1 Score: 204.912 bits (520), Expect = 2.244e-64 Identity = 123/163 (75.46%), Postives = 131/163 (80.37%), Query Frame = 0
Query: 30 NKDFDEEDVRSVANGRDDYGQKTTRAFKESC---DSSSACHLPVALRKIPRANTTA---------PLVKGSS-APMDVPDWSKIYGKSCKKGSRGDVGVSNKG---DDDDDDEMIPPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNAVLTKTGFIE 176
++DFDEEDV SVAN DD G++TTRA KESC SSSA LP A RKIPRAN A PLVKGSS APMD+PDWSKIYGKSCKKGS D G SNKG DDDDDD+M+PPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNA+LTKTGFIE
Sbjct: 3 DRDFDEEDVWSVAN--DDSGKETTRACKESCGSSSSSSAWRLPAAPRKIPRANNNANPLPAASDAPLVKGSSSAPMDIPDWSKIYGKSCKKGSTADDGASNKGGDDDDDDDDDMVPPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNAILTKTGFIE 163
BLAST of Cc_v2.0_19519.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A3Q0FJT1|A0A3Q0FJT1_VIGRR (Uncharacterized protein LOC106774906 OS=Vigna radiata var. radiata OX=3916 GN=LOC106774906 PE=3 SV=1) HSP 1 Score: 204.527 bits (519), Expect = 3.393e-64 Identity = 118/172 (68.60%), Postives = 128/172 (74.42%), Query Frame = 0
Query: 24 DQGVFLN-------------KDFDEEDVRSVANGRDDYGQKTTRAFKESCDSSSACHLPVALRKIPRANTT------APLVKGSSAPMDVPDWSKIYGKSCKKGSRGDVGVSNKGDDDDDDEMIPPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNAVLTKTGFIE 176
D GVFLN KDFDE DV SV ++D Q TTRA KESC SSSA LP A RKIPRA++ APL+K SS PMD+PDWSKIYGKSCKKGSR D S GDDD+DD+M+PPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNA+L KTGFIE
Sbjct: 3 DLGVFLNQRAAAAAGGAMGNKDFDE-DVWSVDYEKNDSAQNTTRACKESCGSSSAWRLPAATRKIPRASSNTPPSSDAPLLKVSSEPMDIPDWSKIYGKSCKKGSRDDGSCSKGGDDDEDDDMVPPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNAILAKTGFIE 173
BLAST of Cc_v2.0_19519.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4D6KTJ7|A0A4D6KTJ7_VIGUN (Senescence regulator S40 OS=Vigna unguiculata OX=3917 GN=DEO72_LG1g756 PE=3 SV=1) HSP 1 Score: 200.675 bits (509), Expect = 1.125e-62 Identity = 111/178 (62.36%), Postives = 119/178 (66.85%), Query Frame = 0
Query: 24 DQGVFLN-----------------KDFDEEDVRSVANGRDDYGQKTTRAFKESCDSSSACHLPVALRKIPRANTTAP--------LVKGSSAPMDVPDWSKIYGKSCKKGSRGDVGVSNKGDDDDDDEMIPPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNAVLTKTGFIE 176
D GVFLN KDFDE DD Q TTRA KES SSSA LP RKIPRA + P L+K SS PMD+PDWSKIYGKSC+KGS D G +KG DD+DDEM+PPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNA+L KTGFIE
Sbjct: 3 DLGVFLNQTCAAAAAGDRGGAMGDKDFDE----------DDSAQNTTRACKESFASSSAWRLPATTRKIPRAKSITPPPSSDAPPLLKASSEPMDIPDWSKIYGKSCEKGSMDDDGACSKGGDDEDDEMVPPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNAILAKTGFIE 170
BLAST of Cc_v2.0_19519.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A371FHF0|A0A371FHF0_MUCPR (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_42081 PE=3 SV=1) HSP 1 Score: 184.882 bits (468), Expect = 2.958e-56 Identity = 112/166 (67.47%), Postives = 120/166 (72.29%), Query Frame = 0
Query: 24 DQGVFLNK------------DFDEEDVRS--VANGRDDYG--QKTTRAFKE-SC--DSSSACHLPVALRKIPRANTTAPL-------VKGSSAPMDVPDWSKIYGKSCKKGSRGDVGVSNKGDDDDDDEMIPPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSK 163
D+GVFLNK D EED+ VA RDD G QKTTRA E SC SSSA HLP + R IPR NT P VKGSSAPMD+PDWSKIYGKSCKKGSR D GVSNKGDDD+D++M+PPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSK
Sbjct: 3 DRGVFLNKSWGVGGGAMEDKDIVEEDMWGAVVAKERDDSGSGQKTTRACNEYSCGSSSSSAWHLPASPRNIPRTNTLPPASDAPLLQVKGSSAPMDIPDWSKIYGKSCKKGSRDD-GVSNKGDDDEDEDMVPPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSK 167
BLAST of Cc_v2.0_19519.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151T6V5|A0A151T6V5_CAJCA (Senescence regulator S40 OS=Cajanus cajan OX=3821 GN=KK1_017327 PE=3 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 3.045e-55 Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0
Query: 92 MDVPDWSKIYGKSCKKGSRGDVGVSNKGDDDDDDEMIPPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNAVLTKTGFIEK 177
MDVPDWSKIYGKSCKKGSRGDVGVSNKGDDDDDDEMIPPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNAVLTKTGFIEK
Sbjct: 1 MDVPDWSKIYGKSCKKGSRGDVGVSNKGDDDDDDEMIPPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNAVLTKTGFIEK 86
BLAST of Cc_v2.0_19519.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9LKA1|S407_ARATH (Protein S40-7 OS=Arabidopsis thaliana OX=3702 GN=S40-7 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.385e-15 Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 0
Query: 126 EMIPPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNAVLTKTGFIE 176
EM+PPHE +AR LA+S + S SV EG GRTLKGRDL +VRNAV +TGFI+
Sbjct: 193 EMLPPHEIVARSLAQSSLLSCSVLEGAGRTLKGRDLRQVRNAVFRRTGFID 243
BLAST of Cc_v2.0_19519.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9SKN0|S404_ARATH (Protein S40-4 OS=Arabidopsis thaliana OX=3702 GN=S40-4 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.060e-15 Identity = 40/94 (42.55%), Postives = 58/94 (61.70%), Query Frame = 0
Query: 88 SSAPMDVPDWSKIYGKSCKKGSRGDVGVSNKGDDDDDDEM-------IPPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNAVLTKTGF 174
SS P++VPDWSKI G ++ + +SN+ + D D+ + +PPHE +A + +++SFSV EG GRTLKGRDLS+VRN + G
Sbjct: 75 SSLPVNVPDWSKILGDESRRQRK----ISNEEEVDGDEILCGEGTRRVPPHELLANR----RMASFSVHEGAGRTLKGRDLSRVRNTIFKIRGI 160
BLAST of Cc_v2.0_19519.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9C7N7|S401_ARATH (Protein S40-1 OS=Arabidopsis thaliana OX=3702 GN=S40-1 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.326e-15 Identity = 46/130 (35.38%), Postives = 65/130 (50.00%), Query Frame = 0
Query: 47 DYGQKTTRAFKESCDSSSACHLPVALRKIPRANTTAPLVKGSSAPMDVPDWSKIYGKSCKKGSRGDVGVSNKGDDDDDDEMIPPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNAVLTKTGFIE 176
D+ + + R + +S S LP A+ SS P+++P + Y DDD +MIPPH + R++ Q++ FSVC G GRTLKGRDLS+VRN+VL TGF+E
Sbjct: 35 DFRENSERVWNKSSRRSKTTPLPSAVTAF-----------SSSLPVNIP--MRRYSTE-----------EEYSDDDGGRKMIPPHLIVGRRMEGGQMA-FSVCTGNGRTLKGRDLSRVRNSVLKLTGFLE 139
BLAST of Cc_v2.0_19519.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9SAA7|S405_ARATH (Protein S40-5 OS=Arabidopsis thaliana OX=3702 GN=S40-5 PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 5.605e-14 Identity = 40/90 (44.44%), Postives = 62/90 (68.89%), Query Frame = 0
Query: 88 SSAPMDVPDWSKIYGKSCKKGSRGDVGVSNKGDDDDDDEMIPPHEWIAR---KLARSQISSFSVCEGMGRTLKGRDLSKVRNAVLTKTGF 174
SSAP++VPDWSKIY + S + S++ +++D M+PPHE++A+ + +R SV EG+GRTLKGR+L +VR+A+ ++TGF
Sbjct: 114 SSAPVNVPDWSKIY----RVNSVESIHESDEEEEEDSGMMMPPHEYLAKSQQRRSRKSGGGGSVFEGVGRTLKGRELRRVRDAIWSQTGF 199
BLAST of Cc_v2.0_19519.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|O80698|S406_ARATH (Protein S40-6 OS=Arabidopsis thaliana OX=3702 GN=S40-6 PE=2 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 5.471e-12 Identity = 40/95 (42.11%), Postives = 56/95 (58.95%), Query Frame = 0
Query: 88 SSAPMDVPDWSKIYG----KSCKKGSRGDVGVSNKGDDDDDDEMIPPHEWIARKLARSQI----SSFSVCEGMGRTLKGRDLSKVRNAVLTKTGF 174
SSAP++VPDWSKIY +S + D G M+PPHE++A+ AR SV +G+GRTLKGR+L +VR+A+ ++TGF
Sbjct: 114 SSAPVNVPDWSKIYRVDSVESIHELDDEDDEDEESG-------MMPPHEYLAKSQARRSRKIGGGGASVFDGVGRTLKGRELRRVRDAIWSQTGF 201
BLAST of Cc_v2.0_19519.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q8GX72|S403_ARATH (Protein S40-3 OS=Arabidopsis thaliana OX=3702 GN=S40-3 PE=2 SV=1) HSP 1 Score: 51.2174 bits (121), Expect = 8.756e-8 Identity = 26/55 (47.27%), Postives = 36/55 (65.45%), Query Frame = 0
Query: 122 DDDDEMIPPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNAVLTKTGFIE 176
+++ EM PPH I ++ +Q++ FS C TLKGRDLS+ RN VL TGF+E
Sbjct: 57 EEEGEMTPPHVIIEKRRTEAQMA-FSFC-----TLKGRDLSRHRNTVLRMTGFLE 105
BLAST of Cc_v2.0_19519.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9FK78|S402_ARATH (Protein S40-2 OS=Arabidopsis thaliana OX=3702 GN=S40-2 PE=2 SV=1) HSP 1 Score: 49.2914 bits (116), Expect = 5.352e-7 Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 0
Query: 122 DDDDEMIPPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNAVLTKTGFIE 176
+++D+ PPH I R++ + QI+ FS C TLKGRDLS+ RN+VL TGF+E
Sbjct: 66 EEEDDKTPPHVIIERRM-KEQIA-FSAC-----TLKGRDLSRHRNSVLRMTGFLE 113
BLAST of Cc_v2.0_19519.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr4:11653633-11654106 FORWARD LENGTH=157) HSP 1 Score: 130.183 bits (326), Expect = 1.006e-38 Identity = 64/104 (61.54%), Postives = 81/104 (77.88%), Query Frame = 0
Query: 73 RKIPRANTTAPLVKGSSAPMDVPDWSKIYGKSCKKGSRGDVGVSNKGDDDDDDEMIPPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNAVLTKTGFIE 176
R IP+ N + K SSAPM++PDWSK+YG S KK + + S DDDD+ M+PPHE +A++LAR+QISSFS+CEG+GRTLKGRDLSK RNAVLT+TGF+E
Sbjct: 44 RYIPKGNEVSGGAKQSSAPMNIPDWSKVYGYS-KKNTSSHLH-SWAIDDDDEGSMVPPHELVAKRLARTQISSFSMCEGIGRTLKGRDLSKTRNAVLTRTGFLE 145
BLAST of Cc_v2.0_19519.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr4:2332163-2332669 REVERSE LENGTH=168) HSP 1 Score: 125.176 bits (313), Expect = 1.522e-36 Identity = 65/94 (69.15%), Postives = 79/94 (84.04%), Query Frame = 0
Query: 85 VKGSSAPMDVPDWSKIYG--KSCKKGSRGDVGVSNKGDDDDDDEMIPPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNAVLTKTGFIE 176
VK SSAPM+VPDWSK+YG KS ++ S ++ D+DDD M+PPHEW+ARKLAR+QISSFS+CEG+GRTLKGRDLSKVRNAVL+KTGF+E
Sbjct: 75 VKQSSAPMNVPDWSKVYGDSKSNRRSSHLHSHAADDDDEDDDGCMVPPHEWVARKLARTQISSFSMCEGVGRTLKGRDLSKVRNAVLSKTGFLE 168
BLAST of Cc_v2.0_19519.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:16557482-16557928 REVERSE LENGTH=148) HSP 1 Score: 88.5817 bits (218), Expect = 1.554e-22 Identity = 44/86 (51.16%), Postives = 62/86 (72.09%), Query Frame = 0
Query: 91 PMDVPDWSKIYGKSCKKGSRGDVGVSNKGDDDDDDEMIPPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNAVLTKTGFIE 176
PM+V +WSKI GK +K S + DDD + +PPHE+ LA+++++SFSV EG+GRTLKGRD+S+VRNA+L KTGF++
Sbjct: 75 PMNVQNWSKILGKENRK--------SIENDDDGGEGKLPPHEY----LAKTRMASFSVHEGIGRTLKGRDMSRVRNAILEKTGFLD 148
BLAST of Cc_v2.0_19519.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr4:13533643-13534077 REVERSE LENGTH=144) HSP 1 Score: 74.3294 bits (181), Expect = 4.141e-17 Identity = 60/149 (40.27%), Postives = 78/149 (52.35%), Query Frame = 0
Query: 32 DFDEEDVRSVANG-RDDYGQKTTRAFKESCDSSSACHLPVALRKIP---RANTTAPLVKGSSAPMDVPDWSKIYGKSCKKGSRGDVGVSNKGDDDDDDEMIPPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNAVLTKTGFIE 176
DF E+DV V +G + + + K S S+ LP R IP R AP+ + S P++VPDWS + K KK DDE + P E+ R+ S SS SV EG+GR LKGRDLSKVRNA+L +TGF+E
Sbjct: 15 DFQEDDVWDVLDGYQSPFMISSNHTTKPSF--STQTLLPSEPRMIPERQRTEGMAPM-RQQSVPVNVPDWSMVQRKKTKKVV--------------DDENVSPEEYFLRRSRSS--SSSSVMEGVGRKLKGRDLSKVRNAILKQTGFLE 144
BLAST of Cc_v2.0_19519.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr4:13533643-13534077 REVERSE LENGTH=144) HSP 1 Score: 74.3294 bits (181), Expect = 4.141e-17 Identity = 60/149 (40.27%), Postives = 78/149 (52.35%), Query Frame = 0
Query: 32 DFDEEDVRSVANG-RDDYGQKTTRAFKESCDSSSACHLPVALRKIP---RANTTAPLVKGSSAPMDVPDWSKIYGKSCKKGSRGDVGVSNKGDDDDDDEMIPPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNAVLTKTGFIE 176
DF E+DV V +G + + + K S S+ LP R IP R AP+ + S P++VPDWS + K KK DDE + P E+ R+ S SS SV EG+GR LKGRDLSKVRNA+L +TGF+E
Sbjct: 15 DFQEDDVWDVLDGYQSPFMISSNHTTKPSF--STQTLLPSEPRMIPERQRTEGMAPM-RQQSVPVNVPDWSMVQRKKTKKVV--------------DDENVSPEEYFLRRSRSS--SSSSVMEGVGRKLKGRDLSKVRNAILKQTGFLE 144
BLAST of Cc_v2.0_19519.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:5065445-5066176 REVERSE LENGTH=243) HSP 1 Score: 75.0998 bits (183), Expect = 1.420e-16 Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 0
Query: 126 EMIPPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNAVLTKTGFIE 176
EM+PPHE +AR LA+S + S SV EG GRTLKGRDL +VRNAV +TGFI+
Sbjct: 193 EMLPPHEIVARSLAQSSLLSCSVLEGAGRTLKGRDLRQVRNAVFRRTGFID 243
BLAST of Cc_v2.0_19519.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr2:12148513-12149001 REVERSE LENGTH=162) HSP 1 Score: 72.4034 bits (176), Expect = 3.160e-16 Identity = 40/94 (42.55%), Postives = 58/94 (61.70%), Query Frame = 0
Query: 88 SSAPMDVPDWSKIYGKSCKKGSRGDVGVSNKGDDDDDDEM-------IPPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNAVLTKTGF 174
SS P++VPDWSKI G ++ + +SN+ + D D+ + +PPHE +A + +++SFSV EG GRTLKGRDLS+VRN + G
Sbjct: 75 SSLPVNVPDWSKILGDESRRQRK----ISNEEEVDGDEILCGEGTRRVPPHELLANR----RMASFSVHEGAGRTLKGRDLSRVRNTIFKIRGI 160
BLAST of Cc_v2.0_19519.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:10355959-10356381 REVERSE LENGTH=140) HSP 1 Score: 71.633 bits (174), Expect = 4.474e-16 Identity = 46/130 (35.38%), Postives = 65/130 (50.00%), Query Frame = 0
Query: 47 DYGQKTTRAFKESCDSSSACHLPVALRKIPRANTTAPLVKGSSAPMDVPDWSKIYGKSCKKGSRGDVGVSNKGDDDDDDEMIPPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNAVLTKTGFIE 176
D+ + + R + +S S LP A+ SS P+++P + Y DDD +MIPPH + R++ Q++ FSVC G GRTLKGRDLS+VRN+VL TGF+E
Sbjct: 35 DFRENSERVWNKSSRRSKTTPLPSAVTAF-----------SSSLPVNIP--MRRYSTE-----------EEYSDDDGGRKMIPPHLIVGRRMEGGQMA-FSVCTGNGRTLKGRDLSRVRNSVLKLTGFLE 139
BLAST of Cc_v2.0_19519.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:24386247-24386738 FORWARD LENGTH=163) HSP 1 Score: 71.2478 bits (173), Expect = 9.361e-16 Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = 0
Query: 91 PMDVPDWSKIYGKSCKKGSRGDVGVSNKGDDDDDDE--MIPPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNAVLTKTGF 174
P++VPDWSKI + R + ++ DDD++D +PPHE+ LA+++++SFSV EG+GRTLKGRDLS+VRNA+ K GF
Sbjct: 80 PVNVPDWSKILRGEYRDNRRRSIEDNDDDDDDNEDGGDWLPPHEF----LAKTRMASFSVHEGVGRTLKGRDLSRVRNAIFEKFGF 161
BLAST of Cc_v2.0_19519.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:3945852-3946457 FORWARD LENGTH=201) HSP 1 Score: 70.0922 bits (170), Expect = 5.761e-15 Identity = 40/90 (44.44%), Postives = 62/90 (68.89%), Query Frame = 0
Query: 88 SSAPMDVPDWSKIYGKSCKKGSRGDVGVSNKGDDDDDDEMIPPHEWIAR---KLARSQISSFSVCEGMGRTLKGRDLSKVRNAVLTKTGF 174
SSAP++VPDWSKIY + S + S++ +++D M+PPHE++A+ + +R SV EG+GRTLKGR+L +VR+A+ ++TGF
Sbjct: 114 SSAPVNVPDWSKIY----RVNSVESIHESDEEEEEDSGMMMPPHEYLAKSQQRRSRKSGGGGSVFEGVGRTLKGRELRRVRDAIWSQTGF 199 The following BLAST results are available for this feature:
BLAST of Cc_v2.0_19519.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs UniProt TrEMBL) Total hits: 10
BLAST of Cc_v2.0_19519.1 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs UniProt Swissprot ) Total hits: 7
BLAST of Cc_v2.0_19519.1 vs. Araport11
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs arabidopsis Araport11) Total hits: 10
InterPro
Analysis Name: InterProScan Analysis for Cajanus cajan cv. Asha genome v2.0
Date Performed: 2024-07-30
Sequences
The
following sequences are available for this feature:
mRNA sequence >drCajCajn.Asha.2.0.Cc_v2.0_19519.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_19519.1; Name=Cc_v2.0_19519.1; organism=Cajanus cajan; type=mRNA; length=534bpback to top protein sequence of drCajCajn.Asha.2.0.Cc_v2.0_19519.1 >drCajCajn.Asha.2.0.Cc_v2.0_19519.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_19519.1; Name=drCajCajn.Asha.2.0.Cc_v2.0_19519.1; organism=Cajanus cajan; type=polypeptide; length=177bpback to top mRNA from alignment at CcLG08_v2.0:53925819..53926502- Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>drCajCajn.Asha.2.0.Cc_v2.0_19519.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_19519.1; Name=Cc_v2.0_19519.1; organism=Cajanus cajan; type=mRNA; length=684bp; location=Sequence derived from: CcLG08_v2.0:53925819..53926502- (Cajanus cajanback to top Coding sequence (CDS) from alignment at CcLG08_v2.0:53925819..53926502- >drCajCajn.Asha.2.0.Cc_v2.0_19519.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_19519.1; Name=Cc_v2.0_19519.1; organism=Cajanus cajan; type=CDS; length=534bp; location=Sequence derived from: CcLG08_v2.0:53925819..53926502- (Cajanus cajanback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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