Cc_v2.0_19460.1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Cc_v2.0_19460.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151T6P7|A0A151T6P7_CAJCA (RIN4 pathogenic type III effector avirulence factor Avr cleavage site domain-containing protein OS=Cajanus cajan OX=3821 GN=KK1_017249 PE=4 SV=1) HSP 1 Score: 375.555 bits (963), Expect = 1.408e-130 Identity = 184/189 (97.35%), Postives = 184/189 (97.35%), Query Frame = 0 Query: 35 MVNPNDPMKNPEAFNTWTRVGENVDADEVMGSHSHHSYSHSVSSLESGNHTHRHHVHHRSRGSQGSFTAEFASEQSHFDHKRSITKGGTSIKRFSSPSHNGHKSKSSSFNDQAHHHAAAIPKFGTWDVTNPQSGEGYTAIFTKIKEEKQTTSRQYPSISHTPPLNNCSNIKNQNAVPSSSLSKYCCCLF 223
MVNPNDPMKNPEAFNTWTRVGENVDADEVMGSHSHHSYSHSVSSLESGNHTHRHHVHHRSRGSQGSFTAEFASEQSHFDHKRSITKGGTSIKRFSSPSHNGHKSKSSSFNDQAHHHAAAIPKFGTWDVTNPQSGEGYTAIFTKIKEEKQTTSRQYPSISHTPPLNNCSNIKNQNAVPSSSLSK F
Sbjct: 1 MVNPNDPMKNPEAFNTWTRVGENVDADEVMGSHSHHSYSHSVSSLESGNHTHRHHVHHRSRGSQGSFTAEFASEQSHFDHKRSITKGGTSIKRFSSPSHNGHKSKSSSFNDQAHHHAAAIPKFGTWDVTNPQSGEGYTAIFTKIKEEKQTTSRQYPSISHTPPLNNCSNIKNQNAVPSSSLSKVFNIYF 189
BLAST of Cc_v2.0_19460.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A371E0S2|A0A371E0S2_MUCPR (RPM1-interacting protein 4 (Fragment) OS=Mucuna pruriens OX=157652 GN=RIN4 PE=4 SV=1) HSP 1 Score: 281.952 bits (720), Expect = 5.682e-93 Identity = 155/232 (66.81%), Postives = 176/232 (75.86%), Query Frame = 0 Query: 1 MAQLSHVPKFGNWDNDNVPYTAYFEHARKEKSGTMVNPNDPMKNPEAFNTWTRVGENVDADEVMGSHSHHSYSHSVSSLESGNHTHRHHVHHRSRGSQGSFTAEFASEQSHFDH--------KRSITKGGTSIKRFSSPSHNG-HKSKSSSFNDQAHHHAAAIPKFGTWDVTNPQSGEGYTAIFTKIKEEKQTTSRQYPSISHTPPLNNCSNIKNQNAVPSSSLSKYCCCLF 223
MAQ SHVPKFGNWD+DNVPYTAYFEHAR+EK+G M+NPNDP EA NT TRVGENVDADEVM H + S++ S GNHT R VHHRSRGS G FTAEF SEQ+H+DH KR+ +KGGTS+K FSS +HN H+S+SSSFND H A AIPKFG WDVTNP+SGEGYTAIF+KIKEE+Q TSR SIS TPPLN+ SNIKNQ PSSS+SK C L+
Sbjct: 1 MAQNSHVPKFGNWDSDNVPYTAYFEHARREKAGIMMNPNDP----EAMNTCTRVGENVDADEVMACHGY-SHNEKGSHGVLGNHTQRR-VHHRSRGSSGGFTAEFGSEQTHYDHSVIHHSDHKRNRSKGGTSVKSFSSSTHNNTHRSESSSFNDHTKHQATAIPKFGAWDVTNPKSGEGYTAIFSKIKEERQITSRHVSSISSTPPLNDTSNIKNQ---PSSSISK-CTNLW 222
BLAST of Cc_v2.0_19460.1 vs. ExPASy TrEMBL (2024)
Match: tr|V7BRK3|V7BRK3_PHAVU (RIN4 pathogenic type III effector avirulence factor Avr cleavage site domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_006G144600g PE=4 SV=1) HSP 1 Score: 261.922 bits (668), Expect = 5.691e-85 Identity = 156/234 (66.67%), Postives = 178/234 (76.07%), Query Frame = 0 Query: 6 HVPKFGNWDNDNVPYTAYFEHAR--KEKSGTMVNPNDPMKNPEAF-NTWTRVGEN-VDADEVMGSHSHHSYSHSVSSLESG---NHTHRHHVHHRSRGSQGSFTAEFASEQSHFDH-----------KRSITKGGTSIKRFSSPSHNGHKSKSSSFNDQAHHHAAAIPKFGTWDVTNPQSGEGYTAIFTKIKEEKQTTSRQYPSISHTPPLNNCSNIKNQNAVPSSSLSKYCCC 221
HVPKFGNWD+DNVPYTAYFEHAR +EK G M+NPNDPM+NPEAF N RVGEN VDADEVMGSH YSH+ +SLE+G N+T RH + RSRGS G FTAEF SEQSH DH KR+I+KGG+SIK FSS SHN +KS++SSFNDQ +H A AIPKFGTWDVTNP SGEGYTAIFTKIKEE+Q S +I++TPPL+ SNI+NQ A S LSKYCCC
Sbjct: 7 HVPKFGNWDSDNVPYTAYFEHARARREKGGKMMNPNDPMENPEAFKNKCMRVGENMVDADEVMGSHG---YSHNRNSLENGRFGNNTQRH-MRGRSRGSDGGFTAEFVSEQSHVDHSVNHRKPQSDHKRNISKGGSSIKSFSSSSHNTNKSRNSSFNDQPNHRAPAIPKFGTWDVTNPNSGEGYTAIFTKIKEERQIKS---TNITNTPPLHK-SNIENQYAGSFSWLSKYCCC 232
BLAST of Cc_v2.0_19460.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0R0I967|A0A0R0I967_SOYBN (RIN4 pathogenic type III effector avirulence factor Avr cleavage site domain-containing protein OS=Glycine max OX=3847 GN=100808554 PE=4 SV=1) HSP 1 Score: 258.84 bits (660), Expect = 6.044e-84 Identity = 156/237 (65.82%), Postives = 179/237 (75.53%), Query Frame = 0 Query: 1 MAQLSH-VPKFGNWDNDNVPYTAYFEHARKEKSGTMVNPNDPMKNPEAFNTWTRVGENVDADEVMGSHSHHSYSHSVSSLESGNHTHRHHVHHRSRGSQGSFT--AEF-ASEQSHFDH----KRSITKGGTSIKRFSSPSHNGHKSKSSSFNDQAHHHAAAIPKFGTWDVTNPQSGEGYTAIFTKIKEEKQTTSRQYPSISHTPPLNNCSNIKNQNAVPSSSLSKYCCCLF-PGESK 228
MAQ SH VPKFGNWD DNVPYT+YFE+AR+EKSG M+NPNDPM+NPEAFNT RV DADEVM + H YSH+V SLE+G+H R RSRGS G T AEF ASEQSHFDH KR+++KGG+SIK FSS SHN ++ +SSF+D ++H A AIPKFGTWDVTNP+SGEGYTAIF+KIKEE+Q S SI TPPLNN SNIKNQ SS LSKYCCC F G+SK
Sbjct: 1 MAQHSHHVPKFGNWDTDNVPYTSYFENARREKSGIMINPNDPMENPEAFNTCIRV----DADEVM--MASHGYSHNVHSLENGSHVRR-----RSRGSNGELTVTAEFGASEQSHFDHSVNHKRNMSKGGSSIKGFSSSSHNTQRTANSSFSDHSNHRATAIPKFGTWDVTNPKSGEGYTAIFSKIKEERQIKSSHVSSIHSTPPLNN-SNIKNQYGESSSWLSKYCCCCFQAGQSK 225
BLAST of Cc_v2.0_19460.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445IV63|A0A445IV63_GLYSO (EH domain-containing protein 2 isoform C OS=Glycine soja OX=3848 GN=D0Y65_022821 PE=4 SV=1) HSP 1 Score: 258.84 bits (660), Expect = 1.985e-83 Identity = 152/231 (65.80%), Postives = 175/231 (75.76%), Query Frame = 0 Query: 6 HVPKFGNWDNDNVPYTAYFEHARKEKSGTMVNPNDPMKNPEAFNTWTRVGENVDADEVMGSHSHHSYSHSVSSLESGNHTHRHHVHHRSRGSQGSFT--AEF-ASEQSHFDH----KRSITKGGTSIKRFSSPSHNGHKSKSSSFNDQAHHHAAAIPKFGTWDVTNPQSGEGYTAIFTKIKEEKQTTSRQYPSISHTPPLNNCSNIKNQNAVPSSSLSKYCCCLF-PGESK 228
HVPKFGNWD DNVPYT+YFE+AR+EKSG M+NPNDPM+NPEAFNT RV DADEVM + H YSH+V SLE+G+H R RSRGS G T AEF ASEQSHFDH KR+++KGG+SIK FSS SHN ++ +SSF+D ++H A AIPKFGTWDVTNP+SGEGYTAIF+KIKEE+Q S SI TPPLNN SNIKNQ SS LSKYCCC F G+SK
Sbjct: 42 HVPKFGNWDTDNVPYTSYFENARREKSGIMINPNDPMENPEAFNTCIRV----DADEVM--MASHGYSHNVHSLENGSHVRR-----RSRGSNGELTVTAEFGASEQSHFDHSVNHKRNMSKGGSSIKGFSSSSHNTQRTANSSFSDHSNHRATAIPKFGTWDVTNPKSGEGYTAIFSKIKEERQIKSSHVSSIHSTPPLNN-SNIKNQYGESSSWLSKYCCCCFQAGQSK 260
BLAST of Cc_v2.0_19460.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8B8K3C1|A0A8B8K3C1_ABRPR (RPM1-interacting protein 4-like OS=Abrus precatorius OX=3816 GN=LOC113852183 PE=4 SV=1) HSP 1 Score: 223.787 bits (569), Expect = 2.292e-70 Identity = 137/225 (60.89%), Postives = 164/225 (72.89%), Query Frame = 0 Query: 1 MAQLSHVPKFGNWDNDNVPYTAYFEHARKEKSGTMVNPNDPMKNPEAFNTWTRVGENVDADEVMGSHSHHSYSHSVSSLESGNHTHRHHVHHRSRGSQGSFTAEFASEQSHFDHK--RSITKGGTSIKRFSSPSHNGHKS-KSSSFNDQAHHHAAAIPKFGTWDVTNPQSGEGYTAIFTKIKEEKQTTSRQYPSISH--TPPLNNCSNIKNQNAVPSSSLSKYCC 220
MAQ SHVPKFGNWD+DNVPYTAYFE+AR+EK G M+NPNDPM+NPEAF +VDADEV S S ++SH+ +SLE R + R RGS+GSFT EFA E ++FD K RSITKGG+SI FSS HN HKS +SSFN ++H A IPKFG WDVT+P+SGEGY+AIF+KIKEE+QTT Q +SH TPPLN+CSN+KNQ PS +LSK
Sbjct: 1 MAQRSHVPKFGNWDSDNVPYTAYFENARREKGGMMMNPNDPMENPEAF--------DVDADEVKAS-SLDAHSHNETSLER---GTRRRLPRRGRGSEGSFTPEFADETNNFDQKKRRSITKGGSSISSFSSSIHNRHKSTTTSSFNHLSNHEATPIPKFGAWDVTDPKSGEGYSAIFSKIKEERQTTPSQ---VSHTSTPPLNHCSNVKNQYHGPSFALSKVML 210
BLAST of Cc_v2.0_19460.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4D6KQ32|A0A4D6KQ32_VIGUN (RPM1-interacting protein 4 OS=Vigna unguiculata OX=3917 GN=DEO72_LG1g811 PE=4 SV=1) HSP 1 Score: 221.09 bits (562), Expect = 3.160e-64 Identity = 135/234 (57.69%), Postives = 164/234 (70.09%), Query Frame = 0 Query: 6 HVPKFGNWDNDNVPYTAYFEHARKEKS-GTMVNPNDPMKNPEAFNT-WTRVGENVDADEVMGSHSHHSYSHSVSSLESG------NHTHRHHVHHRSRGSQGSFTAEFASEQSHF----DHKRSITKGGTSIKRFSSPSHNGHKSKSSSFNDQAHHHAAAIPKFGTWDVTNPQSGEGYTAIFTKIKEEKQTTSRQYPSISHTPPLNNCSNIKNQNAVPSSSLSKYCCCLFPGES 227
HVPKFGNWD+DNVPYTAYFEHAR+EK TM+NPNDP++NPEAFN RVG N+D G YSH+ +SLE+G NHT RH + RSRGS G T +F +S +HKR+I+KGG+SIK FSS SH +KS++SSFND ++ A AIPKFGTWDVTNP SGEGYTAIF KIKEE+Q S +I++TPPL+ SNI+NQ A S SKYCCC F ++
Sbjct: 450 HVPKFGNWDSDNVPYTAYFEHARREKGRMTMMNPNDPIENPEAFNNKCMRVGVNMDDATAFGG-----YSHNGNSLENGRFVALGNHTQRH-MRGRSRGSDGGSTTDFDESESQRSPRSNHKRNISKGGSSIKSFSSSSHTTNKSRNSSFNDPPNNRAPAIPKFGTWDVTNPNSGEGYTAIFNKIKEERQIKS---TNITNTPPLHK-SNIQNQYAGSFSWFSKYCCCGFQAKT 673
BLAST of Cc_v2.0_19460.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A3Q0FFQ6|A0A3Q0FFQ6_VIGRR (RPM1-interacting protein 4 OS=Vigna radiata var. radiata OX=3916 GN=LOC106774889 PE=4 SV=1) HSP 1 Score: 208.764 bits (530), Expect = 4.456e-64 Identity = 132/236 (55.93%), Postives = 160/236 (67.80%), Query Frame = 0 Query: 6 HVPKFGNWDNDNVPYTAYFEHARKEKSG-TMVNPNDPMKNPEAFNT-WTRVGENVDADEVMGSHSHHSYSHSVSSLESGN-----HTHRHHVHHRSRGSQGSFTAEFASEQSHFD-----------HKRSITKGGTSIKRFSSPSHNGHKSKSSSFNDQAHHHAAAIPKFGTWDVTNPQSGEGYTAIFTKIKEEKQTTSRQYPSISHTPPLNNCSNIKNQNAVPSSSLSKYCCCLF 223
HVPKFGNWD+DNVPYTAYFEHAR+EKS M+NPNDPM+NPEA N RVGEN+D YSH+ +SLE+G + + H+ R RGS G T +F SEQS FD H+R+I+KGG+S K FSS SH +KS+++SFNDQ ++ A AIPKFGTWDVT+P SGEGYTAIF KIKEE+Q S +I++TP LN SNI+NQ A S SKYCCC F
Sbjct: 7 HVPKFGNWDSDNVPYTAYFEHARREKSRMVMMNPNDPMENPEALNNKCMRVGENMD----------DGYSHNGNSLENGRFGALGNDAQRHMRGRGRGSNGGSTTDFVSEQSQFDDSVNQRSPRSNHRRNISKGGSSTKSFSSSSHTTNKSRNTSFNDQPNNRAPAIPKFGTWDVTDPNSGEGYTAIFNKIKEERQIKS---ANITNTPTLNK-SNIQNQYAGSFSWFSKYCCCGF 228
BLAST of Cc_v2.0_19460.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0S3S410|A0A0S3S410_PHAAN (RIN4 pathogenic type III effector avirulence factor Avr cleavage site domain-containing protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.05G089600 PE=4 SV=1) HSP 1 Score: 207.223 bits (526), Expect = 1.878e-63 Identity = 135/243 (55.56%), Postives = 158/243 (65.02%), Query Frame = 0 Query: 1 MAQLSH-VPKFGNWDNDNVPYTAYFEHARKEKSG-TMVNPNDPMKNPEAFNT-WTRVGENVDADEVMGSHSHHSYSHSVSSLESG------NHTHRHHVHHRSRGSQGSFTAEFASEQSHFD-----------HKRSITKGGTSIKRFSSPSHNGHKSKSSSFNDQAHHHAAAIPKFGTWDVTNPQSGEGYTAIFTKIKEEKQTTSRQYPSISHTPPLNNCSNIKNQNAVPSSSLSKYCCCLF 223
MAQ SH VPKFGNWD+DNVPYTAYFEHAR+EK M+NPNDPM+NPEA N RVGEN+D YSH+ +SLE+G NHT RH G T +F SEQS FD HKR+I+KGG+S K FSS SH KS+++SFNDQ ++ A AIPKFG WDVT+P SGEGYTAIF KIKEE+Q S +I++TP LN SNI+NQ A S SKYCCC F
Sbjct: 1 MAQHSHHVPKFGNWDSDNVPYTAYFEHARREKGRMVMMNPNDPMENPEALNNKCMRVGENMD----------DGYSHNGNSLENGRFGAVGNHTQRHMRGRSR--GSGGSTTDFVSEQSQFDDSVSQRSPRSNHKRNISKGGSSTKSFSSSSHTTSKSRNTSFNDQPNNRAPAIPKFGAWDVTDPTSGEGYTAIFNKIKEERQIKS---TNITNTPTLNK-SNIRNQYAGSFSWFSKYCCCGF 227
BLAST of Cc_v2.0_19460.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2K3P3S3|A0A2K3P3S3_TRIPR (RPM1-interacting protein 4-like OS=Trifolium pratense OX=57577 GN=L195_g006507 PE=4 SV=1) HSP 1 Score: 207.223 bits (526), Expect = 3.439e-63 Identity = 119/235 (50.64%), Postives = 161/235 (68.51%), Query Frame = 0 Query: 2 AQLSHVPKFGNWDNDNVPYTAYFEHARKEKSGTMVNPNDPMKNPEAFNTWTRVGENVDADEVMGSHSHHSYSHSVSSLESGNH------THRHHVHHRSRGSQGSFTAEFASEQSHFDH------------KRSITKGGT-SIKRFSSPSHNGHKSKSSSFNDQAHHHAAAIPKFGTWDVTNPQSGEGYTAIFTKIKEEKQTTSRQYPSISHTPPLNNCSNIKNQNAVPSSSLSK 217
++ SHVPKFGNW+ DN+PY+A FE AR+EK+G M+NPNDPM+NPEAFN +VG+NV+ DEV SH++ S+ S SS+E G+H + RH RSR S+ SF +EF +E+S+ DH KRS++KGG+ +I FSS +H+ H ++S+SFN+ H A IP+FG WDV +P+SGEGYT +F+KIKEE++ + + I TPP NN SNIKNQ S SLSK
Sbjct: 32 SRRSHVPKFGNWEADNIPYSACFESARREKAGFMMNPNDPMENPEAFN---KVGKNVNEDEVKSSHTY-SHKASSSSMEKGSHELLKNNSTRHLQRRRSRESKDSFKSEFGNEKSNVDHRSVINKTSQSDHKRSVSKGGSGNIGSFSS-NHSRHGNRSNSFNNYVEHKATPIPEFGKWDVKDPKSGEGYTVMFSKIKEERKIVASRITDI-RTPPHNNGSNIKNQYDESSFSLSK 260
BLAST of Cc_v2.0_19460.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q8GYN5|RIN4_ARATH (RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 1.249e-17 Identity = 73/240 (30.42%), Postives = 106/240 (44.17%), Query Frame = 0 Query: 1 MAQLSHVPKFGNWD-NDNVPYTAYFEHARKEKS--GTMVNPNDPMKNPEAFNTWTRVGENVDADEVMGSHSHHSYSHSVSSLESGNHTHRHHVHHRSR--------GSQGSFTAEFA-------SEQSHFDHKRSITKGGTSIKRFSSPSHNGHKSKSSSFNDQAHHHAAAIPKFGTWDVTNPQSGEGYTAIFTKIKEEKQTTSRQYPSISHTPPLNNCSNIKNQNAVPSSSLSKYCCCL 222
MA+ S+VPKFGNW+ +NVPYTAYF+ ARK ++ ++NPNDP N +D + H S + E + R H RSR G G + E A S+ + +D+K + K S P ++ D++ +PKFG WD NP S +GYT IF K++EE+ + + S S TP + N N ++ CCC
Sbjct: 1 MAR-SNVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPEYN---------------SDSQSQAPPHPPSSRT--KPEQVDTVRRSREHMRSREESELKQFGDAGGSSNEAANKRQGRASQNNSYDNKSPLHKNSYDGTGKSRPKPTNLRA------DESPEKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGANVSGS-SRTPTHQSSRNPNNTSS---------CCCF 206
BLAST of Cc_v2.0_19460.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q8S3M3|NOIL_ELAOL (NOI-like protein OS=Elaeis oleifera OX=80265 PE=2 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 8.639e-12 Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 0 Query: 1 MAQLSHVPKFGNWDNDNVPYTAYFEHARKEK--SGTMVNPNDPMKNPEAF 48
MAQ +HVPKFGNWD +N+ YT YFE ++K + NPNDP +NP+AF
Sbjct: 1 MAQPAHVPKFGNWDGENISYTTYFETVHRDKGDGSKIFNPNDPEENPQAF 50
BLAST of Cc_v2.0_19460.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|O22633|NOI4_ARATH (Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1) HSP 1 Score: 50.447 bits (119), Expect = 2.180e-7 Identity = 25/70 (35.71%), Postives = 40/70 (57.14%), Query Frame = 0 Query: 154 IPKFGTWDVTNPQSGEGYTAIFTKIKEEKQTTSRQYPSISHTPPLNNCSNIKNQNAVPSS-SLSKYCCCL 222
+PKFG WDV +P S EG+T IF K ++EK+T + +P ++ ++K+ PS K+ CC+
Sbjct: 8 LPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGK-----PGSPGKSSEGHVKSGGGDPSKPQPKKWLCCM 72
BLAST of Cc_v2.0_19460.1 vs. Araport11
Match: | (Symbols: RIN4, AtRIN4 | RPM1 interacting protein 4 | chr3:9132891-9133747 FORWARD LENGTH=224) HSP 1 Score: 83.9593 bits (206), Expect = 1.945e-19 Identity = 72/240 (30.00%), Postives = 104/240 (43.33%), Query Frame = 0 Query: 1 MAQLSHVPKFGNWD-NDNVPYTAYFEHARKEKS--GTMVNPNDPMKNPEAFNTWTRVGENVDADEVMGSHSHHSYSHSVSSLESGNHTHRHHVHHRSR--------GSQGSFTAEFA-------SEQSHFDHKRSITKGGTSIKRFSSPSHNGHKSKSSSFNDQAHHHAAAIPKFGTWDVTNPQSGEGYTAIFTKIKEEKQTTSRQYPSISHTPPLNNCSNIKNQNAVPSSSLSKYCCCL 222
+ Q S+VPKFGNW+ +NVPYTAYF+ ARK ++ ++NPNDP N D+ H S + E + R H RSR G G + E A S+ + +D+K + K S P ++ D++ +PKFG WD NP S +GYT IF K++EE+ + + S S TP + N N ++ CCC
Sbjct: 13 LQQRSNVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPEYN-------------SDSQSQAPPHPPSSRTKP----EQVDTVRRSREHMRSREESELKQFGDAGGSSNEAANKRQGRASQNNSYDNKSPLHKNSYDGTGKSRPKPTNLRA------DESPEKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGANVSGS-SRTPTHQSSRNPNNTSS---------CCCF 219
BLAST of Cc_v2.0_19460.1 vs. Araport11
Match: | (Symbols: RIN4, AtRIN4 | RPM1 interacting protein 4 | chr3:9132458-9133747 FORWARD LENGTH=211) HSP 1 Score: 81.2629 bits (199), Expect = 1.287e-18 Identity = 73/240 (30.42%), Postives = 106/240 (44.17%), Query Frame = 0 Query: 1 MAQLSHVPKFGNWD-NDNVPYTAYFEHARKEKS--GTMVNPNDPMKNPEAFNTWTRVGENVDADEVMGSHSHHSYSHSVSSLESGNHTHRHHVHHRSR--------GSQGSFTAEFA-------SEQSHFDHKRSITKGGTSIKRFSSPSHNGHKSKSSSFNDQAHHHAAAIPKFGTWDVTNPQSGEGYTAIFTKIKEEKQTTSRQYPSISHTPPLNNCSNIKNQNAVPSSSLSKYCCCL 222
MA+ S+VPKFGNW+ +NVPYTAYF+ ARK ++ ++NPNDP N +D + H S + E + R H RSR G G + E A S+ + +D+K + K S P ++ D++ +PKFG WD NP S +GYT IF K++EE+ + + S S TP + N N ++ CCC
Sbjct: 1 MAR-SNVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPEYN---------------SDSQSQAPPHPPSSRT--KPEQVDTVRRSREHMRSREESELKQFGDAGGSSNEAANKRQGRASQNNSYDNKSPLHKNSYDGTGKSRPKPTNLRA------DESPEKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGANVSGS-SRTPTHQSSRNPNNTSS---------CCCF 206
BLAST of Cc_v2.0_19460.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:25365498-25365949 REVERSE LENGTH=80) HSP 1 Score: 50.8322 bits (120), Expect = 1.811e-8 Identity = 20/38 (52.63%), Postives = 26/38 (68.42%), Query Frame = 0 Query: 147 AHHHAAAIPKFGTWDVTNPQSGEGYTAIFTKIKEEKQT 184
A + +PKFG WDV NP S EG+T IF+K +EK+T
Sbjct: 2 AENKGKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKT 39
BLAST of Cc_v2.0_19460.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:19734120-19735516 REVERSE LENGTH=219) HSP 1 Score: 53.1434 bits (126), Expect = 2.126e-8 Identity = 72/233 (30.90%), Postives = 95/233 (40.77%), Query Frame = 0 Query: 1 MAQLSHVPKFGNWDNDNVPYTAYFEHARKEKSGTMV-NPND-PMKNPEAFN--TWTRVGENVDADEVMGSHSHHSYSHSVSSLESGNHTHRHHVHHRSRGSQGSFTAEFASEQSHFDHKRSITKGGTSIKRFSSPSHNGHKSKSSSFNDQAHHHAAAIPKF-GTWDVTNPQSGEGYTAIFTKIKEEKQTTSRQYPSISHTPPLNNCSNIKNQNAVPSSSLSKYCCCLFPGESK 228
MA HVPKFG+W D P+T FE A K K V NPN+ P NP A +R + V H + S H R++ R T E + Q++ RS+ T I R S H + + Q+ A IP F GT QS YT IF K+KE++ +R Y H+ P I +Q+ P S K CC FP S+
Sbjct: 1 MANRPHVPKFGDWTED-APFTVVFEKASKSKKNMNVANPNEYPDMNPNAAQNRNMSRPDQQPPNHNVRPRHERFNSRDETEFRPSPAHNERNN-----RVRSVPPTPETYNHQTYGGGGRSMG-NPTEINRRQSRDHVPARP-IRNLRGQSSERVATIPPFPGTGSNMENQS---YTLIFDKVKEDR-NQARSYNGTDHSTP---TRPIIDQHHQPLPSSPKGCC--FPPWSR 216
BLAST of Cc_v2.0_19460.1 vs. Araport11
Match: | (Symbols: NOI | | chr5:22603617-22604850 FORWARD LENGTH=79) HSP 1 Score: 50.447 bits (119), Expect = 2.256e-8 Identity = 25/70 (35.71%), Postives = 40/70 (57.14%), Query Frame = 0 Query: 154 IPKFGTWDVTNPQSGEGYTAIFTKIKEEKQTTSRQYPSISHTPPLNNCSNIKNQNAVPSS-SLSKYCCCL 222
+PKFG WDV +P S EG+T IF K ++EK+T + +P ++ ++K+ PS K+ CC+
Sbjct: 8 LPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGK-----PGSPGKSSEGHVKSGGGDPSKPQPKKWLCCM 72
BLAST of Cc_v2.0_19460.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:19734120-19735687 REVERSE LENGTH=276) HSP 1 Score: 53.1434 bits (126), Expect = 3.269e-8 Identity = 72/233 (30.90%), Postives = 95/233 (40.77%), Query Frame = 0 Query: 1 MAQLSHVPKFGNWDNDNVPYTAYFEHARKEKSGTMV-NPND-PMKNPEAFN--TWTRVGENVDADEVMGSHSHHSYSHSVSSLESGNHTHRHHVHHRSRGSQGSFTAEFASEQSHFDHKRSITKGGTSIKRFSSPSHNGHKSKSSSFNDQAHHHAAAIPKF-GTWDVTNPQSGEGYTAIFTKIKEEKQTTSRQYPSISHTPPLNNCSNIKNQNAVPSSSLSKYCCCLFPGESK 228
MA HVPKFG+W D P+T FE A K K V NPN+ P NP A +R + V H + S H R++ R T E + Q++ RS+ T I R S H + + Q+ A IP F GT QS YT IF K+KE++ +R Y H+ P I +Q+ P S K CC FP S+
Sbjct: 58 MANRPHVPKFGDWTED-APFTVVFEKASKSKKNMNVANPNEYPDMNPNAAQNRNMSRPDQQPPNHNVRPRHERFNSRDETEFRPSPAHNERNN-----RVRSVPPTPETYNHQTYGGGGRSM-GNPTEINRRQSRDHVPARP-IRNLRGQSSERVATIPPFPGTGSNMENQS---YTLIFDKVKEDR-NQARSYNGTDHSTP---TRPIIDQHHQPLPSSPKGCC--FPPWSR 273
BLAST of Cc_v2.0_19460.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:16280410-16280883 REVERSE LENGTH=73) HSP 1 Score: 48.1358 bits (113), Expect = 1.187e-7 Identity = 17/33 (51.52%), Postives = 25/33 (75.76%), Query Frame = 0 Query: 154 IPKFGTWDVTNPQSGEGYTAIFTKIKEEKQTTS 186
+PKFG WDV +P S EG+T IF K +++K+T +
Sbjct: 15 LPKFGEWDVNDPASAEGFTVIFAKARDDKKTNA 47
BLAST of Cc_v2.0_19460.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:17944232-17944788 REVERSE LENGTH=89) HSP 1 Score: 48.521 bits (114), Expect = 1.446e-7 Identity = 19/36 (52.78%), Postives = 26/36 (72.22%), Query Frame = 0 Query: 149 HHAAAIPKFGTWDVTNPQSGEGYTAIFTKIKEEKQT 184
+ A +PKFG WD TNP S EG+T IF K +++K+T
Sbjct: 5 NRARPLPKFGEWDATNPGSAEGFTVIFNKARDDKKT 40
BLAST of Cc_v2.0_19460.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:17944232-17944788 REVERSE LENGTH=89) HSP 1 Score: 48.521 bits (114), Expect = 1.446e-7 Identity = 19/36 (52.78%), Postives = 26/36 (72.22%), Query Frame = 0 Query: 149 HHAAAIPKFGTWDVTNPQSGEGYTAIFTKIKEEKQT 184
+ A +PKFG WD TNP S EG+T IF K +++K+T
Sbjct: 5 NRARPLPKFGEWDATNPGSAEGFTVIFNKARDDKKT 40
BLAST of Cc_v2.0_19460.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:19734019-19735516 REVERSE LENGTH=277) HSP 1 Score: 50.8322 bits (120), Expect = 2.123e-7 Identity = 72/246 (29.27%), Postives = 95/246 (38.62%), Query Frame = 0 Query: 1 MAQLSHVPKFGNWDNDNVPYTAYFEHARKEKSGTMV-NPND-PMKNPEAFN--TWTRVGENVDADEVMGSHSHHSYSHSVSSLESGNHTHRHHVHHRSRGSQGSFTAEFASEQSHFDHKRSITKGGTSIKRFSSPSHNGHKSKSSSFNDQAHHHAAAIPKF-GTWDVTNPQSGEGYTAIFTKIKEEKQTTSRQYPSISH-TP----------PLNNCSNIKNQNAVPSS-------SLSKYCCCLF 223
MA HVPKFG+W D P+T FE A K K V NPN+ P NP A +R + V H + S H R++ R T E + Q++ RS+ T I R S H + + Q+ A IP F GT QS YT IF K+KE++ +R Y H TP PL + + NQN + S L+ C L
Sbjct: 1 MANRPHVPKFGDWTED-APFTVVFEKASKSKKNMNVANPNEYPDMNPNAAQNRNMSRPDQQPPNHNVRPRHERFNSRDETEFRPSPAHNERNN-----RVRSVPPTPETYNHQTYGGGGRSM-GNPTEINRRQSRDHVPARP-IRNLRGQSSERVATIPPFPGTGSNMENQS---YTLIFDKVKEDR-NQARSYNGTDHSTPTRPIIDQHHQPLPSSPKVDNQNIISLSFINPLFLQLTLLCVGLL 234 The following BLAST results are available for this feature:
BLAST of Cc_v2.0_19460.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of Cc_v2.0_19460.1 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs UniProt Swissprot ) Total hits: 3 Position : 0 Zoom : x 1
BLAST of Cc_v2.0_19460.1 vs. Araport11
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs arabidopsis Araport11) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Cajanus cajan cv. Asha genome v2.0
Date Performed: 2024-07-30 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >drCajCajn.Asha.2.0.Cc_v2.0_19460.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_19460.1; Name=Cc_v2.0_19460.1; organism=Cajanus cajan; type=mRNA; length=687bpback to top protein sequence of drCajCajn.Asha.2.0.Cc_v2.0_19460.1 >drCajCajn.Asha.2.0.Cc_v2.0_19460.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_19460.1; Name=drCajCajn.Asha.2.0.Cc_v2.0_19460.1; organism=Cajanus cajan; type=polypeptide; length=228bpback to top mRNA from alignment at CcLG08_v2.0:53257401..53259665- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>drCajCajn.Asha.2.0.Cc_v2.0_19460.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_19460.1; Name=Cc_v2.0_19460.1; organism=Cajanus cajan; type=mRNA; length=2265bp; location=Sequence derived from: CcLG08_v2.0:53257401..53259665- (Cajanus cajanback to top Coding sequence (CDS) from alignment at CcLG08_v2.0:53257401..53259665- >drCajCajn.Asha.2.0.Cc_v2.0_19460.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_19460.1; Name=Cc_v2.0_19460.1; organism=Cajanus cajan; type=CDS; length=687bp; location=Sequence derived from: CcLG08_v2.0:53257401..53259665- (Cajanus cajanback to top |