Cc_v2.0_19460.1

Transcript Overview
NameCc_v2.0_19460.1
Unique NamedrCajCajn.Asha.2.0.Cc_v2.0_19460.1
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length687
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CcLG08_v2.0chromosomeCcLG08_v2.0:53257401..53259665 -Cajanus cajan cv. Asha genome v2.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
avjccaL137Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anccaL0222Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
avjccaL291Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anccaL0413Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccaL0575Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccaL0849Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
carccaL066Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
ccapsR677Pisum sativum Cameor genome v1aPisum sativum
ccapsR713Pisum sativum Cameor genome v1aPisum sativum
ccapsR715Pisum sativum Cameor genome v1aPisum sativum
carccaL616Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
ccavrvR613Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccavrvR656Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccavfhR659Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccapvR748Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccavfhR695Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccapvR782Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccavssR722Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccccaL0080Cajanus cajan Asha genome v1.0Cajanus cajan
ccavssR750Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccccaL0659Cajanus cajan Asha genome v1.0Cajanus cajan
ccavumR698Vigna umbellata FF25 genome v1.0Vigna umbellata
ccavuR568Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccavumR747Vigna umbellata FF25 genome v1.0Vigna umbellata
ccavuR594Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccavumR753Vigna umbellata FF25 genome v1.0Vigna umbellata
ccavunR489Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
ccavunR516Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
ccapvfR777Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
ccapvfR801Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
ccapvfR804Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
Vum_05G00731.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Psat1g177320.1Pisum sativum Cameor genome v1aPisum sativum
Va09G054760.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vigun06g156400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
rna-XM_022787164.1Vigna radiata cv. VC1973A genome v6.0Vigna radiata
jg39093.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Phvul.006G144600.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vigun06g156400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
evm.Ca_v2.0_00704Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
Vfaba.Hedin2.R1.1g447920.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-KK1_004585Cajanus cajan Asha genome v1.0Cajanus cajan
rna-KK1_017249Cajanus cajan Asha genome v1.0Cajanus cajan
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Cc_v2.0_19460drCajCajn.Asha.2.0.Cc_v2.0_19460Cajanus cajangene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cc_v2.0_19460.1.exon4drCajCajn.Asha.2.0.Cc_v2.0_19460.1.exon4Cajanus cajanexon
Cc_v2.0_19460.1.exon3drCajCajn.Asha.2.0.Cc_v2.0_19460.1.exon3Cajanus cajanexon
Cc_v2.0_19460.1.exon2drCajCajn.Asha.2.0.Cc_v2.0_19460.1.exon2Cajanus cajanexon
Cc_v2.0_19460.1.exon1drCajCajn.Asha.2.0.Cc_v2.0_19460.1.exon1Cajanus cajanexon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cc_v2.0_19460.1.utr3p1drCajCajn.Asha.2.0.Cc_v2.0_19460.1.utr3p1Cajanus cajanthree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds.Cc_v2.0_19460.1drCajCajn.Asha.2.0.cds.Cc_v2.0_19460.1Cajanus cajanCDS
cds.Cc_v2.0_19460.1drCajCajn.Asha.2.0.cds.Cc_v2.0_19460.1_2Cajanus cajanCDS
cds.Cc_v2.0_19460.1drCajCajn.Asha.2.0.cds.Cc_v2.0_19460.1_3Cajanus cajanCDS
cds.Cc_v2.0_19460.1drCajCajn.Asha.2.0.cds.Cc_v2.0_19460.1_4Cajanus cajanCDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cc_v2.0_19460.1.utr5p1drCajCajn.Asha.2.0.Cc_v2.0_19460.1.utr5p1Cajanus cajanfive_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
drCajCajn.Asha.2.0.Cc_v2.0_19460.1drCajCajn.Asha.2.0.Cc_v2.0_19460.1Cajanus cajanpolypeptide
drCajCajn.Asha.2.0.Cc_v2.0_19460.1drCajCajn.Asha.2.0.Cc_v2.0_19460.1-proteinCajanus cajanpolypeptide


Homology
BLAST of Cc_v2.0_19460.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151T6P7|A0A151T6P7_CAJCA (RIN4 pathogenic type III effector avirulence factor Avr cleavage site domain-containing protein OS=Cajanus cajan OX=3821 GN=KK1_017249 PE=4 SV=1)

HSP 1 Score: 375.555 bits (963), Expect = 1.408e-130
Identity = 184/189 (97.35%), Postives = 184/189 (97.35%), Query Frame = 0
Query:   35 MVNPNDPMKNPEAFNTWTRVGENVDADEVMGSHSHHSYSHSVSSLESGNHTHRHHVHHRSRGSQGSFTAEFASEQSHFDHKRSITKGGTSIKRFSSPSHNGHKSKSSSFNDQAHHHAAAIPKFGTWDVTNPQSGEGYTAIFTKIKEEKQTTSRQYPSISHTPPLNNCSNIKNQNAVPSSSLSKYCCCLF 223
            MVNPNDPMKNPEAFNTWTRVGENVDADEVMGSHSHHSYSHSVSSLESGNHTHRHHVHHRSRGSQGSFTAEFASEQSHFDHKRSITKGGTSIKRFSSPSHNGHKSKSSSFNDQAHHHAAAIPKFGTWDVTNPQSGEGYTAIFTKIKEEKQTTSRQYPSISHTPPLNNCSNIKNQNAVPSSSLSK     F
Sbjct:    1 MVNPNDPMKNPEAFNTWTRVGENVDADEVMGSHSHHSYSHSVSSLESGNHTHRHHVHHRSRGSQGSFTAEFASEQSHFDHKRSITKGGTSIKRFSSPSHNGHKSKSSSFNDQAHHHAAAIPKFGTWDVTNPQSGEGYTAIFTKIKEEKQTTSRQYPSISHTPPLNNCSNIKNQNAVPSSSLSKVFNIYF 189          
BLAST of Cc_v2.0_19460.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A371E0S2|A0A371E0S2_MUCPR (RPM1-interacting protein 4 (Fragment) OS=Mucuna pruriens OX=157652 GN=RIN4 PE=4 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 5.682e-93
Identity = 155/232 (66.81%), Postives = 176/232 (75.86%), Query Frame = 0
Query:    1 MAQLSHVPKFGNWDNDNVPYTAYFEHARKEKSGTMVNPNDPMKNPEAFNTWTRVGENVDADEVMGSHSHHSYSHSVSSLESGNHTHRHHVHHRSRGSQGSFTAEFASEQSHFDH--------KRSITKGGTSIKRFSSPSHNG-HKSKSSSFNDQAHHHAAAIPKFGTWDVTNPQSGEGYTAIFTKIKEEKQTTSRQYPSISHTPPLNNCSNIKNQNAVPSSSLSKYCCCLF 223
            MAQ SHVPKFGNWD+DNVPYTAYFEHAR+EK+G M+NPNDP    EA NT TRVGENVDADEVM  H + S++   S    GNHT R  VHHRSRGS G FTAEF SEQ+H+DH        KR+ +KGGTS+K FSS +HN  H+S+SSSFND   H A AIPKFG WDVTNP+SGEGYTAIF+KIKEE+Q TSR   SIS TPPLN+ SNIKNQ   PSSS+SK C  L+
Sbjct:    1 MAQNSHVPKFGNWDSDNVPYTAYFEHARREKAGIMMNPNDP----EAMNTCTRVGENVDADEVMACHGY-SHNEKGSHGVLGNHTQRR-VHHRSRGSSGGFTAEFGSEQTHYDHSVIHHSDHKRNRSKGGTSVKSFSSSTHNNTHRSESSSFNDHTKHQATAIPKFGAWDVTNPKSGEGYTAIFSKIKEERQITSRHVSSISSTPPLNDTSNIKNQ---PSSSISK-CTNLW 222          
BLAST of Cc_v2.0_19460.1 vs. ExPASy TrEMBL (2024)
Match: tr|V7BRK3|V7BRK3_PHAVU (RIN4 pathogenic type III effector avirulence factor Avr cleavage site domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_006G144600g PE=4 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 5.691e-85
Identity = 156/234 (66.67%), Postives = 178/234 (76.07%), Query Frame = 0
Query:    6 HVPKFGNWDNDNVPYTAYFEHAR--KEKSGTMVNPNDPMKNPEAF-NTWTRVGEN-VDADEVMGSHSHHSYSHSVSSLESG---NHTHRHHVHHRSRGSQGSFTAEFASEQSHFDH-----------KRSITKGGTSIKRFSSPSHNGHKSKSSSFNDQAHHHAAAIPKFGTWDVTNPQSGEGYTAIFTKIKEEKQTTSRQYPSISHTPPLNNCSNIKNQNAVPSSSLSKYCCC 221
            HVPKFGNWD+DNVPYTAYFEHAR  +EK G M+NPNDPM+NPEAF N   RVGEN VDADEVMGSH    YSH+ +SLE+G   N+T RH +  RSRGS G FTAEF SEQSH DH           KR+I+KGG+SIK FSS SHN +KS++SSFNDQ +H A AIPKFGTWDVTNP SGEGYTAIFTKIKEE+Q  S    +I++TPPL+  SNI+NQ A   S LSKYCCC
Sbjct:    7 HVPKFGNWDSDNVPYTAYFEHARARREKGGKMMNPNDPMENPEAFKNKCMRVGENMVDADEVMGSHG---YSHNRNSLENGRFGNNTQRH-MRGRSRGSDGGFTAEFVSEQSHVDHSVNHRKPQSDHKRNISKGGSSIKSFSSSSHNTNKSRNSSFNDQPNHRAPAIPKFGTWDVTNPNSGEGYTAIFTKIKEERQIKS---TNITNTPPLHK-SNIENQYAGSFSWLSKYCCC 232          
BLAST of Cc_v2.0_19460.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0R0I967|A0A0R0I967_SOYBN (RIN4 pathogenic type III effector avirulence factor Avr cleavage site domain-containing protein OS=Glycine max OX=3847 GN=100808554 PE=4 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 6.044e-84
Identity = 156/237 (65.82%), Postives = 179/237 (75.53%), Query Frame = 0
Query:    1 MAQLSH-VPKFGNWDNDNVPYTAYFEHARKEKSGTMVNPNDPMKNPEAFNTWTRVGENVDADEVMGSHSHHSYSHSVSSLESGNHTHRHHVHHRSRGSQGSFT--AEF-ASEQSHFDH----KRSITKGGTSIKRFSSPSHNGHKSKSSSFNDQAHHHAAAIPKFGTWDVTNPQSGEGYTAIFTKIKEEKQTTSRQYPSISHTPPLNNCSNIKNQNAVPSSSLSKYCCCLF-PGESK 228
            MAQ SH VPKFGNWD DNVPYT+YFE+AR+EKSG M+NPNDPM+NPEAFNT  RV    DADEVM   + H YSH+V SLE+G+H  R     RSRGS G  T  AEF ASEQSHFDH    KR+++KGG+SIK FSS SHN  ++ +SSF+D ++H A AIPKFGTWDVTNP+SGEGYTAIF+KIKEE+Q  S    SI  TPPLNN SNIKNQ    SS LSKYCCC F  G+SK
Sbjct:    1 MAQHSHHVPKFGNWDTDNVPYTSYFENARREKSGIMINPNDPMENPEAFNTCIRV----DADEVM--MASHGYSHNVHSLENGSHVRR-----RSRGSNGELTVTAEFGASEQSHFDHSVNHKRNMSKGGSSIKGFSSSSHNTQRTANSSFSDHSNHRATAIPKFGTWDVTNPKSGEGYTAIFSKIKEERQIKSSHVSSIHSTPPLNN-SNIKNQYGESSSWLSKYCCCCFQAGQSK 225          
BLAST of Cc_v2.0_19460.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445IV63|A0A445IV63_GLYSO (EH domain-containing protein 2 isoform C OS=Glycine soja OX=3848 GN=D0Y65_022821 PE=4 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 1.985e-83
Identity = 152/231 (65.80%), Postives = 175/231 (75.76%), Query Frame = 0
Query:    6 HVPKFGNWDNDNVPYTAYFEHARKEKSGTMVNPNDPMKNPEAFNTWTRVGENVDADEVMGSHSHHSYSHSVSSLESGNHTHRHHVHHRSRGSQGSFT--AEF-ASEQSHFDH----KRSITKGGTSIKRFSSPSHNGHKSKSSSFNDQAHHHAAAIPKFGTWDVTNPQSGEGYTAIFTKIKEEKQTTSRQYPSISHTPPLNNCSNIKNQNAVPSSSLSKYCCCLF-PGESK 228
            HVPKFGNWD DNVPYT+YFE+AR+EKSG M+NPNDPM+NPEAFNT  RV    DADEVM   + H YSH+V SLE+G+H  R     RSRGS G  T  AEF ASEQSHFDH    KR+++KGG+SIK FSS SHN  ++ +SSF+D ++H A AIPKFGTWDVTNP+SGEGYTAIF+KIKEE+Q  S    SI  TPPLNN SNIKNQ    SS LSKYCCC F  G+SK
Sbjct:   42 HVPKFGNWDTDNVPYTSYFENARREKSGIMINPNDPMENPEAFNTCIRV----DADEVM--MASHGYSHNVHSLENGSHVRR-----RSRGSNGELTVTAEFGASEQSHFDHSVNHKRNMSKGGSSIKGFSSSSHNTQRTANSSFSDHSNHRATAIPKFGTWDVTNPKSGEGYTAIFSKIKEERQIKSSHVSSIHSTPPLNN-SNIKNQYGESSSWLSKYCCCCFQAGQSK 260          
BLAST of Cc_v2.0_19460.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8B8K3C1|A0A8B8K3C1_ABRPR (RPM1-interacting protein 4-like OS=Abrus precatorius OX=3816 GN=LOC113852183 PE=4 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 2.292e-70
Identity = 137/225 (60.89%), Postives = 164/225 (72.89%), Query Frame = 0
Query:    1 MAQLSHVPKFGNWDNDNVPYTAYFEHARKEKSGTMVNPNDPMKNPEAFNTWTRVGENVDADEVMGSHSHHSYSHSVSSLESGNHTHRHHVHHRSRGSQGSFTAEFASEQSHFDHK--RSITKGGTSIKRFSSPSHNGHKS-KSSSFNDQAHHHAAAIPKFGTWDVTNPQSGEGYTAIFTKIKEEKQTTSRQYPSISH--TPPLNNCSNIKNQNAVPSSSLSKYCC 220
            MAQ SHVPKFGNWD+DNVPYTAYFE+AR+EK G M+NPNDPM+NPEAF        +VDADEV  S S  ++SH+ +SLE      R  +  R RGS+GSFT EFA E ++FD K  RSITKGG+SI  FSS  HN HKS  +SSFN  ++H A  IPKFG WDVT+P+SGEGY+AIF+KIKEE+QTT  Q   +SH  TPPLN+CSN+KNQ   PS +LSK   
Sbjct:    1 MAQRSHVPKFGNWDSDNVPYTAYFENARREKGGMMMNPNDPMENPEAF--------DVDADEVKAS-SLDAHSHNETSLER---GTRRRLPRRGRGSEGSFTPEFADETNNFDQKKRRSITKGGSSISSFSSSIHNRHKSTTTSSFNHLSNHEATPIPKFGAWDVTDPKSGEGYSAIFSKIKEERQTTPSQ---VSHTSTPPLNHCSNVKNQYHGPSFALSKVML 210          
BLAST of Cc_v2.0_19460.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4D6KQ32|A0A4D6KQ32_VIGUN (RPM1-interacting protein 4 OS=Vigna unguiculata OX=3917 GN=DEO72_LG1g811 PE=4 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 3.160e-64
Identity = 135/234 (57.69%), Postives = 164/234 (70.09%), Query Frame = 0
Query:    6 HVPKFGNWDNDNVPYTAYFEHARKEKS-GTMVNPNDPMKNPEAFNT-WTRVGENVDADEVMGSHSHHSYSHSVSSLESG------NHTHRHHVHHRSRGSQGSFTAEFASEQSHF----DHKRSITKGGTSIKRFSSPSHNGHKSKSSSFNDQAHHHAAAIPKFGTWDVTNPQSGEGYTAIFTKIKEEKQTTSRQYPSISHTPPLNNCSNIKNQNAVPSSSLSKYCCCLFPGES 227
            HVPKFGNWD+DNVPYTAYFEHAR+EK   TM+NPNDP++NPEAFN    RVG N+D     G      YSH+ +SLE+G      NHT RH +  RSRGS G  T +F   +S      +HKR+I+KGG+SIK FSS SH  +KS++SSFND  ++ A AIPKFGTWDVTNP SGEGYTAIF KIKEE+Q  S    +I++TPPL+  SNI+NQ A   S  SKYCCC F  ++
Sbjct:  450 HVPKFGNWDSDNVPYTAYFEHARREKGRMTMMNPNDPIENPEAFNNKCMRVGVNMDDATAFGG-----YSHNGNSLENGRFVALGNHTQRH-MRGRSRGSDGGSTTDFDESESQRSPRSNHKRNISKGGSSIKSFSSSSHTTNKSRNSSFNDPPNNRAPAIPKFGTWDVTNPNSGEGYTAIFNKIKEERQIKS---TNITNTPPLHK-SNIQNQYAGSFSWFSKYCCCGFQAKT 673          
BLAST of Cc_v2.0_19460.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A3Q0FFQ6|A0A3Q0FFQ6_VIGRR (RPM1-interacting protein 4 OS=Vigna radiata var. radiata OX=3916 GN=LOC106774889 PE=4 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 4.456e-64
Identity = 132/236 (55.93%), Postives = 160/236 (67.80%), Query Frame = 0
Query:    6 HVPKFGNWDNDNVPYTAYFEHARKEKSG-TMVNPNDPMKNPEAFNT-WTRVGENVDADEVMGSHSHHSYSHSVSSLESGN-----HTHRHHVHHRSRGSQGSFTAEFASEQSHFD-----------HKRSITKGGTSIKRFSSPSHNGHKSKSSSFNDQAHHHAAAIPKFGTWDVTNPQSGEGYTAIFTKIKEEKQTTSRQYPSISHTPPLNNCSNIKNQNAVPSSSLSKYCCCLF 223
            HVPKFGNWD+DNVPYTAYFEHAR+EKS   M+NPNDPM+NPEA N    RVGEN+D            YSH+ +SLE+G      +  + H+  R RGS G  T +F SEQS FD           H+R+I+KGG+S K FSS SH  +KS+++SFNDQ ++ A AIPKFGTWDVT+P SGEGYTAIF KIKEE+Q  S    +I++TP LN  SNI+NQ A   S  SKYCCC F
Sbjct:    7 HVPKFGNWDSDNVPYTAYFEHARREKSRMVMMNPNDPMENPEALNNKCMRVGENMD----------DGYSHNGNSLENGRFGALGNDAQRHMRGRGRGSNGGSTTDFVSEQSQFDDSVNQRSPRSNHRRNISKGGSSTKSFSSSSHTTNKSRNTSFNDQPNNRAPAIPKFGTWDVTDPNSGEGYTAIFNKIKEERQIKS---ANITNTPTLNK-SNIQNQYAGSFSWFSKYCCCGF 228          
BLAST of Cc_v2.0_19460.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0S3S410|A0A0S3S410_PHAAN (RIN4 pathogenic type III effector avirulence factor Avr cleavage site domain-containing protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.05G089600 PE=4 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.878e-63
Identity = 135/243 (55.56%), Postives = 158/243 (65.02%), Query Frame = 0
Query:    1 MAQLSH-VPKFGNWDNDNVPYTAYFEHARKEKSG-TMVNPNDPMKNPEAFNT-WTRVGENVDADEVMGSHSHHSYSHSVSSLESG------NHTHRHHVHHRSRGSQGSFTAEFASEQSHFD-----------HKRSITKGGTSIKRFSSPSHNGHKSKSSSFNDQAHHHAAAIPKFGTWDVTNPQSGEGYTAIFTKIKEEKQTTSRQYPSISHTPPLNNCSNIKNQNAVPSSSLSKYCCCLF 223
            MAQ SH VPKFGNWD+DNVPYTAYFEHAR+EK    M+NPNDPM+NPEA N    RVGEN+D            YSH+ +SLE+G      NHT RH          G  T +F SEQS FD           HKR+I+KGG+S K FSS SH   KS+++SFNDQ ++ A AIPKFG WDVT+P SGEGYTAIF KIKEE+Q  S    +I++TP LN  SNI+NQ A   S  SKYCCC F
Sbjct:    1 MAQHSHHVPKFGNWDSDNVPYTAYFEHARREKGRMVMMNPNDPMENPEALNNKCMRVGENMD----------DGYSHNGNSLENGRFGAVGNHTQRHMRGRSR--GSGGSTTDFVSEQSQFDDSVSQRSPRSNHKRNISKGGSSTKSFSSSSHTTSKSRNTSFNDQPNNRAPAIPKFGAWDVTDPTSGEGYTAIFNKIKEERQIKS---TNITNTPTLNK-SNIRNQYAGSFSWFSKYCCCGF 227          
BLAST of Cc_v2.0_19460.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2K3P3S3|A0A2K3P3S3_TRIPR (RPM1-interacting protein 4-like OS=Trifolium pratense OX=57577 GN=L195_g006507 PE=4 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 3.439e-63
Identity = 119/235 (50.64%), Postives = 161/235 (68.51%), Query Frame = 0
Query:    2 AQLSHVPKFGNWDNDNVPYTAYFEHARKEKSGTMVNPNDPMKNPEAFNTWTRVGENVDADEVMGSHSHHSYSHSVSSLESGNH------THRHHVHHRSRGSQGSFTAEFASEQSHFDH------------KRSITKGGT-SIKRFSSPSHNGHKSKSSSFNDQAHHHAAAIPKFGTWDVTNPQSGEGYTAIFTKIKEEKQTTSRQYPSISHTPPLNNCSNIKNQNAVPSSSLSK 217
            ++ SHVPKFGNW+ DN+PY+A FE AR+EK+G M+NPNDPM+NPEAFN   +VG+NV+ DEV  SH++ S+  S SS+E G+H      + RH    RSR S+ SF +EF +E+S+ DH            KRS++KGG+ +I  FSS +H+ H ++S+SFN+   H A  IP+FG WDV +P+SGEGYT +F+KIKEE++  + +   I  TPP NN SNIKNQ    S SLSK
Sbjct:   32 SRRSHVPKFGNWEADNIPYSACFESARREKAGFMMNPNDPMENPEAFN---KVGKNVNEDEVKSSHTY-SHKASSSSMEKGSHELLKNNSTRHLQRRRSRESKDSFKSEFGNEKSNVDHRSVINKTSQSDHKRSVSKGGSGNIGSFSS-NHSRHGNRSNSFNNYVEHKATPIPEFGKWDVKDPKSGEGYTVMFSKIKEERKIVASRITDI-RTPPHNNGSNIKNQYDESSFSLSK 260          
BLAST of Cc_v2.0_19460.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q8GYN5|RIN4_ARATH (RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.249e-17
Identity = 73/240 (30.42%), Postives = 106/240 (44.17%), Query Frame = 0
Query:    1 MAQLSHVPKFGNWD-NDNVPYTAYFEHARKEKS--GTMVNPNDPMKNPEAFNTWTRVGENVDADEVMGSHSHHSYSHSVSSLESGNHTHRHHVHHRSR--------GSQGSFTAEFA-------SEQSHFDHKRSITKGGTSIKRFSSPSHNGHKSKSSSFNDQAHHHAAAIPKFGTWDVTNPQSGEGYTAIFTKIKEEKQTTSRQYPSISHTPPLNNCSNIKNQNAVPSSSLSKYCCCL 222
            MA+ S+VPKFGNW+  +NVPYTAYF+ ARK ++    ++NPNDP  N               +D    +  H   S +    E  +   R   H RSR        G  G  + E A       S+ + +D+K  + K        S P     ++      D++      +PKFG WD  NP S +GYT IF K++EE+ + +    S S TP   +  N  N ++         CCC 
Sbjct:    1 MAR-SNVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPEYN---------------SDSQSQAPPHPPSSRT--KPEQVDTVRRSREHMRSREESELKQFGDAGGSSNEAANKRQGRASQNNSYDNKSPLHKNSYDGTGKSRPKPTNLRA------DESPEKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGANVSGS-SRTPTHQSSRNPNNTSS---------CCCF 206          
BLAST of Cc_v2.0_19460.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q8S3M3|NOIL_ELAOL (NOI-like protein OS=Elaeis oleifera OX=80265 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.639e-12
Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 0
Query:    1 MAQLSHVPKFGNWDNDNVPYTAYFEHARKEK--SGTMVNPNDPMKNPEAF 48
            MAQ +HVPKFGNWD +N+ YT YFE   ++K     + NPNDP +NP+AF
Sbjct:    1 MAQPAHVPKFGNWDGENISYTTYFETVHRDKGDGSKIFNPNDPEENPQAF 50          
BLAST of Cc_v2.0_19460.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|O22633|NOI4_ARATH (Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 2.180e-7
Identity = 25/70 (35.71%), Postives = 40/70 (57.14%), Query Frame = 0
Query:  154 IPKFGTWDVTNPQSGEGYTAIFTKIKEEKQTTSRQYPSISHTPPLNNCSNIKNQNAVPSS-SLSKYCCCL 222
            +PKFG WDV +P S EG+T IF K ++EK+T  +       +P  ++  ++K+    PS     K+ CC+
Sbjct:    8 LPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGK-----PGSPGKSSEGHVKSGGGDPSKPQPKKWLCCM 72          
BLAST of Cc_v2.0_19460.1 vs. Araport11
Match: | (Symbols: RIN4, AtRIN4 | RPM1 interacting protein 4 | chr3:9132891-9133747 FORWARD LENGTH=224)

HSP 1 Score: 83.9593 bits (206), Expect = 1.945e-19
Identity = 72/240 (30.00%), Postives = 104/240 (43.33%), Query Frame = 0
Query:    1 MAQLSHVPKFGNWD-NDNVPYTAYFEHARKEKS--GTMVNPNDPMKNPEAFNTWTRVGENVDADEVMGSHSHHSYSHSVSSLESGNHTHRHHVHHRSR--------GSQGSFTAEFA-------SEQSHFDHKRSITKGGTSIKRFSSPSHNGHKSKSSSFNDQAHHHAAAIPKFGTWDVTNPQSGEGYTAIFTKIKEEKQTTSRQYPSISHTPPLNNCSNIKNQNAVPSSSLSKYCCCL 222
            + Q S+VPKFGNW+  +NVPYTAYF+ ARK ++    ++NPNDP  N              D+      H   S +      E  +   R   H RSR        G  G  + E A       S+ + +D+K  + K        S P     ++      D++      +PKFG WD  NP S +GYT IF K++EE+ + +    S S TP   +  N  N ++         CCC 
Sbjct:   13 LQQRSNVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPEYN-------------SDSQSQAPPHPPSSRTKP----EQVDTVRRSREHMRSREESELKQFGDAGGSSNEAANKRQGRASQNNSYDNKSPLHKNSYDGTGKSRPKPTNLRA------DESPEKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGANVSGS-SRTPTHQSSRNPNNTSS---------CCCF 219          
BLAST of Cc_v2.0_19460.1 vs. Araport11
Match: | (Symbols: RIN4, AtRIN4 | RPM1 interacting protein 4 | chr3:9132458-9133747 FORWARD LENGTH=211)

HSP 1 Score: 81.2629 bits (199), Expect = 1.287e-18
Identity = 73/240 (30.42%), Postives = 106/240 (44.17%), Query Frame = 0
Query:    1 MAQLSHVPKFGNWD-NDNVPYTAYFEHARKEKS--GTMVNPNDPMKNPEAFNTWTRVGENVDADEVMGSHSHHSYSHSVSSLESGNHTHRHHVHHRSR--------GSQGSFTAEFA-------SEQSHFDHKRSITKGGTSIKRFSSPSHNGHKSKSSSFNDQAHHHAAAIPKFGTWDVTNPQSGEGYTAIFTKIKEEKQTTSRQYPSISHTPPLNNCSNIKNQNAVPSSSLSKYCCCL 222
            MA+ S+VPKFGNW+  +NVPYTAYF+ ARK ++    ++NPNDP  N               +D    +  H   S +    E  +   R   H RSR        G  G  + E A       S+ + +D+K  + K        S P     ++      D++      +PKFG WD  NP S +GYT IF K++EE+ + +    S S TP   +  N  N ++         CCC 
Sbjct:    1 MAR-SNVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPEYN---------------SDSQSQAPPHPPSSRT--KPEQVDTVRRSREHMRSREESELKQFGDAGGSSNEAANKRQGRASQNNSYDNKSPLHKNSYDGTGKSRPKPTNLRA------DESPEKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGANVSGS-SRTPTHQSSRNPNNTSS---------CCCF 206          
BLAST of Cc_v2.0_19460.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:25365498-25365949 REVERSE LENGTH=80)

HSP 1 Score: 50.8322 bits (120), Expect = 1.811e-8
Identity = 20/38 (52.63%), Postives = 26/38 (68.42%), Query Frame = 0
Query:  147 AHHHAAAIPKFGTWDVTNPQSGEGYTAIFTKIKEEKQT 184
            A +    +PKFG WDV NP S EG+T IF+K  +EK+T
Sbjct:    2 AENKGKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKT 39          
BLAST of Cc_v2.0_19460.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:19734120-19735516 REVERSE LENGTH=219)

HSP 1 Score: 53.1434 bits (126), Expect = 2.126e-8
Identity = 72/233 (30.90%), Postives = 95/233 (40.77%), Query Frame = 0
Query:    1 MAQLSHVPKFGNWDNDNVPYTAYFEHARKEKSGTMV-NPND-PMKNPEAFN--TWTRVGENVDADEVMGSHSHHSYSHSVSSLESGNHTHRHHVHHRSRGSQGSFTAEFASEQSHFDHKRSITKGGTSIKRFSSPSHNGHKSKSSSFNDQAHHHAAAIPKF-GTWDVTNPQSGEGYTAIFTKIKEEKQTTSRQYPSISHTPPLNNCSNIKNQNAVPSSSLSKYCCCLFPGESK 228
            MA   HVPKFG+W  D  P+T  FE A K K    V NPN+ P  NP A      +R  +      V   H   +         S  H  R++     R      T E  + Q++    RS+    T I R  S  H   +    +   Q+    A IP F GT      QS   YT IF K+KE++   +R Y    H+ P      I +Q+  P  S  K CC  FP  S+
Sbjct:    1 MANRPHVPKFGDWTED-APFTVVFEKASKSKKNMNVANPNEYPDMNPNAAQNRNMSRPDQQPPNHNVRPRHERFNSRDETEFRPSPAHNERNN-----RVRSVPPTPETYNHQTYGGGGRSMG-NPTEINRRQSRDHVPARP-IRNLRGQSSERVATIPPFPGTGSNMENQS---YTLIFDKVKEDR-NQARSYNGTDHSTP---TRPIIDQHHQPLPSSPKGCC--FPPWSR 216          
BLAST of Cc_v2.0_19460.1 vs. Araport11
Match: | (Symbols: NOI | | chr5:22603617-22604850 FORWARD LENGTH=79)

HSP 1 Score: 50.447 bits (119), Expect = 2.256e-8
Identity = 25/70 (35.71%), Postives = 40/70 (57.14%), Query Frame = 0
Query:  154 IPKFGTWDVTNPQSGEGYTAIFTKIKEEKQTTSRQYPSISHTPPLNNCSNIKNQNAVPSS-SLSKYCCCL 222
            +PKFG WDV +P S EG+T IF K ++EK+T  +       +P  ++  ++K+    PS     K+ CC+
Sbjct:    8 LPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGK-----PGSPGKSSEGHVKSGGGDPSKPQPKKWLCCM 72          
BLAST of Cc_v2.0_19460.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:19734120-19735687 REVERSE LENGTH=276)

HSP 1 Score: 53.1434 bits (126), Expect = 3.269e-8
Identity = 72/233 (30.90%), Postives = 95/233 (40.77%), Query Frame = 0
Query:    1 MAQLSHVPKFGNWDNDNVPYTAYFEHARKEKSGTMV-NPND-PMKNPEAFN--TWTRVGENVDADEVMGSHSHHSYSHSVSSLESGNHTHRHHVHHRSRGSQGSFTAEFASEQSHFDHKRSITKGGTSIKRFSSPSHNGHKSKSSSFNDQAHHHAAAIPKF-GTWDVTNPQSGEGYTAIFTKIKEEKQTTSRQYPSISHTPPLNNCSNIKNQNAVPSSSLSKYCCCLFPGESK 228
            MA   HVPKFG+W  D  P+T  FE A K K    V NPN+ P  NP A      +R  +      V   H   +         S  H  R++     R      T E  + Q++    RS+    T I R  S  H   +    +   Q+    A IP F GT      QS   YT IF K+KE++   +R Y    H+ P      I +Q+  P  S  K CC  FP  S+
Sbjct:   58 MANRPHVPKFGDWTED-APFTVVFEKASKSKKNMNVANPNEYPDMNPNAAQNRNMSRPDQQPPNHNVRPRHERFNSRDETEFRPSPAHNERNN-----RVRSVPPTPETYNHQTYGGGGRSM-GNPTEINRRQSRDHVPARP-IRNLRGQSSERVATIPPFPGTGSNMENQS---YTLIFDKVKEDR-NQARSYNGTDHSTP---TRPIIDQHHQPLPSSPKGCC--FPPWSR 273          
BLAST of Cc_v2.0_19460.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:16280410-16280883 REVERSE LENGTH=73)

HSP 1 Score: 48.1358 bits (113), Expect = 1.187e-7
Identity = 17/33 (51.52%), Postives = 25/33 (75.76%), Query Frame = 0
Query:  154 IPKFGTWDVTNPQSGEGYTAIFTKIKEEKQTTS 186
            +PKFG WDV +P S EG+T IF K +++K+T +
Sbjct:   15 LPKFGEWDVNDPASAEGFTVIFAKARDDKKTNA 47          
BLAST of Cc_v2.0_19460.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:17944232-17944788 REVERSE LENGTH=89)

HSP 1 Score: 48.521 bits (114), Expect = 1.446e-7
Identity = 19/36 (52.78%), Postives = 26/36 (72.22%), Query Frame = 0
Query:  149 HHAAAIPKFGTWDVTNPQSGEGYTAIFTKIKEEKQT 184
            + A  +PKFG WD TNP S EG+T IF K +++K+T
Sbjct:    5 NRARPLPKFGEWDATNPGSAEGFTVIFNKARDDKKT 40          
BLAST of Cc_v2.0_19460.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:17944232-17944788 REVERSE LENGTH=89)

HSP 1 Score: 48.521 bits (114), Expect = 1.446e-7
Identity = 19/36 (52.78%), Postives = 26/36 (72.22%), Query Frame = 0
Query:  149 HHAAAIPKFGTWDVTNPQSGEGYTAIFTKIKEEKQT 184
            + A  +PKFG WD TNP S EG+T IF K +++K+T
Sbjct:    5 NRARPLPKFGEWDATNPGSAEGFTVIFNKARDDKKT 40          
BLAST of Cc_v2.0_19460.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:19734019-19735516 REVERSE LENGTH=277)

HSP 1 Score: 50.8322 bits (120), Expect = 2.123e-7
Identity = 72/246 (29.27%), Postives = 95/246 (38.62%), Query Frame = 0
Query:    1 MAQLSHVPKFGNWDNDNVPYTAYFEHARKEKSGTMV-NPND-PMKNPEAFN--TWTRVGENVDADEVMGSHSHHSYSHSVSSLESGNHTHRHHVHHRSRGSQGSFTAEFASEQSHFDHKRSITKGGTSIKRFSSPSHNGHKSKSSSFNDQAHHHAAAIPKF-GTWDVTNPQSGEGYTAIFTKIKEEKQTTSRQYPSISH-TP----------PLNNCSNIKNQNAVPSS-------SLSKYCCCLF 223
            MA   HVPKFG+W  D  P+T  FE A K K    V NPN+ P  NP A      +R  +      V   H   +         S  H  R++     R      T E  + Q++    RS+    T I R  S  H   +    +   Q+    A IP F GT      QS   YT IF K+KE++   +R Y    H TP          PL +   + NQN +  S        L+  C  L 
Sbjct:    1 MANRPHVPKFGDWTED-APFTVVFEKASKSKKNMNVANPNEYPDMNPNAAQNRNMSRPDQQPPNHNVRPRHERFNSRDETEFRPSPAHNERNN-----RVRSVPPTPETYNHQTYGGGGRSM-GNPTEINRRQSRDHVPARP-IRNLRGQSSERVATIPPFPGTGSNMENQS---YTLIFDKVKEDR-NQARSYNGTDHSTPTRPIIDQHHQPLPSSPKVDNQNIISLSFINPLFLQLTLLCVGLL 234          
The following BLAST results are available for this feature:
BLAST of Cc_v2.0_19460.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A151T6P7|A0A151T6P7_CAJCA1.408e-13097.35RIN4 pathogenic type III effector avirulence facto... [more]
tr|A0A371E0S2|A0A371E0S2_MUCPR5.682e-9366.81RPM1-interacting protein 4 (Fragment) OS=Mucuna pr... [more]
tr|V7BRK3|V7BRK3_PHAVU5.691e-8566.67RIN4 pathogenic type III effector avirulence facto... [more]
tr|A0A0R0I967|A0A0R0I967_SOYBN6.044e-8465.82RIN4 pathogenic type III effector avirulence facto... [more]
tr|A0A445IV63|A0A445IV63_GLYSO1.985e-8365.80EH domain-containing protein 2 isoform C OS=Glycin... [more]
tr|A0A8B8K3C1|A0A8B8K3C1_ABRPR2.292e-7060.89RPM1-interacting protein 4-like OS=Abrus precatori... [more]
tr|A0A4D6KQ32|A0A4D6KQ32_VIGUN3.160e-6457.69RPM1-interacting protein 4 OS=Vigna unguiculata OX... [more]
tr|A0A3Q0FFQ6|A0A3Q0FFQ6_VIGRR4.456e-6455.93RPM1-interacting protein 4 OS=Vigna radiata var. r... [more]
tr|A0A0S3S410|A0A0S3S410_PHAAN1.878e-6355.56RIN4 pathogenic type III effector avirulence facto... [more]
tr|A0A2K3P3S3|A0A2K3P3S3_TRIPR3.439e-6350.64RPM1-interacting protein 4-like OS=Trifolium prate... [more]
back to top
BLAST of Cc_v2.0_19460.1 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs UniProt Swissprot )
Total hits: 3
Match NameE-valueIdentityDescription
sp|Q8GYN5|RIN4_ARATH1.249e-1730.42RPM1-interacting protein 4 OS=Arabidopsis thaliana... [more]
sp|Q8S3M3|NOIL_ELAOL8.639e-1256.00NOI-like protein OS=Elaeis oleifera OX=80265 PE=2 ... [more]
sp|O22633|NOI4_ARATH2.180e-735.71Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NO... [more]
back to top
BLAST of Cc_v2.0_19460.1 vs. Araport11
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs arabidopsis Araport11)
Total hits: 10
Match NameE-valueIdentityDescription
|1.945e-1930.00Symbols: RIN4, AtRIN4 | RPM1 interacting protein 4... [more]
|1.287e-1830.42Symbols: RIN4, AtRIN4 | RPM1 interacting protein 4... [more]
|1.811e-852.63Symbols: no symbol available | no full name availa... [more]
|2.126e-830.90Symbols: no symbol available | no full name availa... [more]
|2.256e-835.71Symbols: NOI | | chr5:22603617-22604850 FORWARD L... [more]
|3.269e-830.90Symbols: no symbol available | no full name availa... [more]
|1.187e-751.52Symbols: no symbol available | no full name availa... [more]
|1.446e-752.78Symbols: no symbol available | no full name availa... [more]
|1.446e-752.78Symbols: no symbol available | no full name availa... [more]
|2.123e-729.27Symbols: no symbol available | no full name availa... [more]
back to top
InterPro
Analysis Name: InterProScan Analysis for Cajanus cajan cv. Asha genome v2.0
Date Performed: 2024-07-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008700RIN4, pathogenic type III effector avirulence factor Avr cleavage sitePFAMPF05627AvrRpt-cleavagecoord: 151..184
e-value: 1.5E-12
score: 58.0
coord: 5..32
e-value: 0.4
score: 21.4
IPR040387RPM1-interacting protein 4/NOI4PANTHERPTHR33159RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEINcoord: 6..221

Sequences
The following sequences are available for this feature:

mRNA sequence

>drCajCajn.Asha.2.0.Cc_v2.0_19460.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_19460.1; Name=Cc_v2.0_19460.1; organism=Cajanus cajan; type=mRNA; length=687bp
ATGGCTCAGCTCTCTCACGTTCCAAAGTTTGGCAATTGGGACAATGACAA
CGTTCCATACACGGCATATTTTGAGCATGCACGCAAAGAAAAAAGTGGGA
CGATGGTGAACCCTAATGACCCAATGAAAAATCCAGAGGCCTTCAACACG
TGGACGAGAGTTGGGGAAAATGTTGATGCTGATGAAGTGATGGGTTCTCA
TTCTCATCATAGCTACTCCCACAGCGTAAGTTCTTTGGAAAGTGGAAACC
ACACTCATCGTCATCATGTGCATCACAGAAGCAGGGGCAGTCAAGGTAGC
TTCACAGCAGAGTTTGCGAGTGAACAGAGTCATTTTGATCACAAGAGGAG
CATCACCAAAGGAGGCACTAGCATTAAGCGCTTCTCTTCCCCAAGTCATA
ATGGACACAAGAGTAAAAGCTCTTCCTTTAATGACCAAGCGCACCATCAT
GCAGCAGCAATACCCAAATTTGGGACTTGGGATGTGACAAACCCACAATC
AGGAGAGGGTTATACTGCTATATTCACCAAAATAAAAGAAGAAAAGCAAA
CTACGTCCAGGCAATACCCCAGCATAAGCCATACCCCACCACTTAACAAC
TGTTCAAATATTAAGAATCAAAATGCTGTACCTTCCTCTTCCTTATCCAA
GTACTGTTGCTGTTTGTTTCCTGGTGAAAGCAAATGA
back to top

protein sequence of drCajCajn.Asha.2.0.Cc_v2.0_19460.1

>drCajCajn.Asha.2.0.Cc_v2.0_19460.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_19460.1; Name=drCajCajn.Asha.2.0.Cc_v2.0_19460.1; organism=Cajanus cajan; type=polypeptide; length=228bp
MAQLSHVPKFGNWDNDNVPYTAYFEHARKEKSGTMVNPNDPMKNPEAFNT
WTRVGENVDADEVMGSHSHHSYSHSVSSLESGNHTHRHHVHHRSRGSQGS
FTAEFASEQSHFDHKRSITKGGTSIKRFSSPSHNGHKSKSSSFNDQAHHH
AAAIPKFGTWDVTNPQSGEGYTAIFTKIKEEKQTTSRQYPSISHTPPLNN
CSNIKNQNAVPSSSLSKYCCCLFPGESK
back to top

mRNA from alignment at CcLG08_v2.0:53257401..53259665-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>drCajCajn.Asha.2.0.Cc_v2.0_19460.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_19460.1; Name=Cc_v2.0_19460.1; organism=Cajanus cajan; type=mRNA; length=2265bp; location=Sequence derived from: CcLG08_v2.0:53257401..53259665- (Cajanus cajan
GTTCAACTGTGTCAATTATAAAGGGTTTTCTTCTTGCAGAACCATATATT TAGTTACTGTTATGCCAGCATATCCTCTCAGGCACACGGAGAGAGGTCAC AGATCCTTGGGCACCGGATTTTGTACCATAAGAAACTCGTCAACTAAATA ATGGCTGTAAGTTTTACTTACTATATATTAGAGATTTGGTTTTAAACATA ATCAGGAACTAAGTTGGTTTTAATCTAGTAACCATTCTTTTTGATGGTGG CAATCAATCATCTCATAAGTACAACTGGGGTTTTCTAAGAAAAGCTCAAA CTTTTTTTCCCATAGAAACCATCTCCTCTTTGCCATCTTTCCTTCTCCCT AGTCCTTAGTCTATAAAACTACGGTTTTACAAGCTATAAGATCACTGAAA TTAGAGTCGCCCTTCATAATTAGTCCCATATATTGATAATATCATGAAAA TATTCTGTCAGTTACTGCCAGACTATATGTTAATTTTATTTTCCTACTTG ATGACAAACTGAAGCATCAAGTCATCAAATCACGTAGACTCAAACCCGTC AGCTTAATTTTAATGATTTTCATTATAGACAGAATGATCATATTGGACAT ATGTAGAACTTACTACCAATTCGGGATGGCAAATCATTCAATATCCCGAA ATTTTAGGACTATATATGGTTCATTTGGTTTAAAATTGTGGAATCGATTA TGAAAAAAAATAAATAATAAAACATTCGATGTTATAAAATTAATTTGTCT TTAGAAATAACATTTTAGAAGTAAATTTATAGCAAAAAATAATATTTATA TCATAAAGCAAGTTTCTTGGCAAATGGCAAACCAAACATGCCAATAAGCT TACTACAAGTTCAACACATTTATTAGATATCGAAGTTTTTTCTAAAGCAT GATGAAAATAAAAAACATTTTACGAAGATCATTACACCTAGAAAAGAATT AGTTTTGACTATGGAAGGATGTCTTCATTCCATTTGTTTTGAAACCAAAT TATACATATTTTATAAATGTTTTGGCCATGGCTGGTGACAGCAGCTCTCT CACGTTCCAAAGTTTGGCAATTGGGACAATGACAACGTTCCATACACGGC ATATTTTGAGCATGCACGCAAAGAAAAAAGTGGGACGATGGTGAACCCTA ATGACCCAATGAAAAATCCAGAGGCCTTCAACACGTGGACGAGAGTTGGG GAAAATGTTGATGCTGATGAAGTGATGGGTTCTCATTCTCATCATAGCTA CTCCCACAGCGTAAGTTCTTTGGAAAGTGGAAACCACACTCATCGTCATC ATGTGCATCACAGAAGCAGGGGCAGTCAAGGTAGCTTCACAGCAGAGTTT GCGAGTGAACAGAGTCATTTTGATCACAAGAGGAGCATCACCAAAGGAGG CACTAGCATTAAGCGCTTCTCTTCCCCAAGTCATAATGGACACAAGAGTA AAAGCTCTTCCTTTAATGACCAAGCGGTAATTCATTTTCCTCAAATCATT TTCTATCACTAATATTTATTTTTTACTATTTAATTTTTTTATATTCTCTT AAGATTTAATTATCGTTTGGTCTTTATAACGATTGACACATAGATGCCAC CCCCTTTCTTATCATTTTTTGGTCTTCCATGGTGATCAAAATTATGGGGG GCATGCAGCACCATCATGCAGCAGCAATACCCAAATTTGGGACTTGGGAT GTGACAAACCCACAATCAGGAGAGGGTTATACTGCTATATTCACCAAAAT AAAAGAAGAAAAGCAAACTACGTCCAGGCAATACCCCAGCATAAGCCATA CCCCACCACTTAACAACTGTTCAAATATTAAGAATCAAAATGCTGTACCT TCCTCTTCCTTATCCAAGGTATTTAACATATACTTTTAAAATAAGATTAA TTTATTTTTTATTCATTGATATTGTTCAAAAATATATATATATATGTGGT GTCACAGCTATAGTGATTTAATTTATTTCATCCATCTATGCAAGGTGTTG GTTTCCTATTCCTCTGCTAATTCATGAATATTTTCATGCAGTACTGTTGC TGTTTGTTTCCTGGTGAAAGCAAATGAAAGCAGAATCTAATAATGTTTGC ACCACTTAAATGTTTCTATTTATTCGGAATATTTATCGTATATTCTTCAC AAACTGTTCTAGCTAGTTTCATTTACTTGAGCTTTTATTGTCATTAATTC TAATGCACATTATTTGTCGATGTCGCAACTAAAGACAGCTTGGACAAACT TCTATGAGGTACCAG
back to top

Coding sequence (CDS) from alignment at CcLG08_v2.0:53257401..53259665-

>drCajCajn.Asha.2.0.Cc_v2.0_19460.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_19460.1; Name=Cc_v2.0_19460.1; organism=Cajanus cajan; type=CDS; length=687bp; location=Sequence derived from: CcLG08_v2.0:53257401..53259665- (Cajanus cajan
ATGGCTCAGCTCTCTCACGTTCCAAAGTTTGGCAATTGGGACAATGACAA
CGTTCCATACACGGCATATTTTGAGCATGCACGCAAAGAAAAAAGTGGGA
CGATGGTGAACCCTAATGACCCAATGAAAAATCCAGAGGCCTTCAACACG
TGGACGAGAGTTGGGGAAAATGTTGATGCTGATGAAGTGATGGGTTCTCA
TTCTCATCATAGCTACTCCCACAGCGTAAGTTCTTTGGAAAGTGGAAACC
ACACTCATCGTCATCATGTGCATCACAGAAGCAGGGGCAGTCAAGGTAGC
TTCACAGCAGAGTTTGCGAGTGAACAGAGTCATTTTGATCACAAGAGGAG
CATCACCAAAGGAGGCACTAGCATTAAGCGCTTCTCTTCCCCAAGTCATA
ATGGACACAAGAGTAAAAGCTCTTCCTTTAATGACCAAGCGCACCATCAT
GCAGCAGCAATACCCAAATTTGGGACTTGGGATGTGACAAACCCACAATC
AGGAGAGGGTTATACTGCTATATTCACCAAAATAAAAGAAGAAAAGCAAA
CTACGTCCAGGCAATACCCCAGCATAAGCCATACCCCACCACTTAACAAC
TGTTCAAATATTAAGAATCAAAATGCTGTACCTTCCTCTTCCTTATCCAA
GTACTGTTGCTGTTTGTTTCCTGGTGAAAGCAAATGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR008700TypeIII_avirulence_cleave
IPR040387RIN4/NOI4