XM_058884546.1

Transcript Overview
NameXM_058884546.1
Unique NamedrVicVill.AUMerit.1.0.rna-XM_058884546.1
TypemRNA
OrganismVicia villosa (vetch)
Sequence length1137
References
External references for this mRNA
DatabaseAccession
GeneID131612799
GenBankXM_058884546.1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
LG6chromosomeLG6:152158045..152160840 +Vicia villosa cv. AU Merit genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
carvvaL181Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
carvvaL192Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
psvvaL287Pisum sativum Cameor genome v1aPisum sativum
carvvaL318Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
anvvaL0469Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvvaL0473Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
avjvvaL409Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvvaL415Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvvaL497Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvvaL519Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anvvaL0667Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvvaL0732Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvvaL0896Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvvaL0898Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvvaL1207Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
pvvvaL070Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvvaL077Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvvaL093Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
vasvvaL491Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvvaL513Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvvaL730Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
vasvvaL801Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvvaL806Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vrvvvaL307Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvvaL312Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvvaL319Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvvaL596Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vfhvvaL607Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vvavvaL073Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaL049Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vuvvaL055Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vvavvaL263Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaL062Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vumvvaL204Vigna umbellata FF25 genome v1.0Vigna umbellata
vumvvaL211Vigna umbellata FF25 genome v1.0Vigna umbellata
vstvvaL485Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvvaL497Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvvaL529Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vumvvaL616Vigna umbellata FF25 genome v1.0Vigna umbellata
vumvvaL629Vigna umbellata FF25 genome v1.0Vigna umbellata
vssvvaL649Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvvaL658Vicia sativa cv. Studenica genome v1.0Vicia sativa
vumvvaL661Vigna umbellata FF25 genome v1.0Vigna umbellata
vstvvaL809Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vuvvaL642Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vuvvaL648Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Va03G078960.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-XM_014640850.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-TanjilR_22577Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vfaba.Hedin2.R1.5g174600.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vum_04G02861.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vigun01g208100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
jg31140.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Phvul.001G223800.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vigst.04G255500.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
evm.Ca_v2.0_08100Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
rna-TanjilR_07467Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
XM_058884523.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
LOC131612799drVicVill.AUMerit.1.0.gene-LOC131612799Vicia villosagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-XM_058884546.1-1drVicVill.AUMerit.1.0.exon-XM_058884546.1-1Vicia villosaexon
exon-XM_058884546.1-2drVicVill.AUMerit.1.0.exon-XM_058884546.1-2Vicia villosaexon
exon-XM_058884546.1-3drVicVill.AUMerit.1.0.exon-XM_058884546.1-3Vicia villosaexon
exon-XM_058884546.1-4drVicVill.AUMerit.1.0.exon-XM_058884546.1-4Vicia villosaexon
exon-XM_058884546.1-5drVicVill.AUMerit.1.0.exon-XM_058884546.1-5Vicia villosaexon
exon-XM_058884546.1-6drVicVill.AUMerit.1.0.exon-XM_058884546.1-6Vicia villosaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
XP_058740529.1drVicVill.AUMerit.1.0.cds-XP_058740529.1Vicia villosaCDS
XP_058740529.1drVicVill.AUMerit.1.0.cds-XP_058740529.1_2Vicia villosaCDS
XP_058740529.1drVicVill.AUMerit.1.0.cds-XP_058740529.1_3Vicia villosaCDS
XP_058740529.1drVicVill.AUMerit.1.0.cds-XP_058740529.1_4Vicia villosaCDS
XP_058740529.1drVicVill.AUMerit.1.0.cds-XP_058740529.1_5Vicia villosaCDS
XP_058740529.1drVicVill.AUMerit.1.0.cds-XP_058740529.1_6Vicia villosaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
drVicVill.AUMerit.1.0.rna-XM_058884546.1drVicVill.AUMerit.1.0.rna-XM_058884546.1Vicia villosapolypeptide
drVicVill.AUMerit.1.0.rna-XM_058884546.1drVicVill.AUMerit.1.0.rna-XM_058884546.1-proteinVicia villosapolypeptide


Homology
[Close]
BLAST of XM_058884546.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A9D4XT18|A0A9D4XT18_PEA (Chloroplast stem-loop binding protein of 41 kDa b OS=Pisum sativum OX=3888 GN=KIW84_030679 PE=3 SV=1)

HSP 1 Score: 759.985 bits (1961), Expect = 0.000e+0
Identity = 368/377 (97.61%), Postives = 373/377 (98.94%), Query Frame = 0 
Query:    1 MARLVAFQQNQLSFPPLASSFSDFNGTRLQTHIQLKRKTRQPKASFYVSASSTKKILIMGGTRFIGVFLSRQLVKEGHQVTLFTRGKAPITQQLPGESDTDFADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHAEIDAVDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLATAFLKVLGNDKASKQIFNISGDKYVTFDGLARACAKAGGFPEPELIHYNPKDFDFGKKKSFPFRDQHFFASVEKAKSVLGLEPEYGLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVN 377
            MARLVA QQNQLSFPPLASS SDFNGTRLQTHIQLKRKT +PK SFYVSASSTKKILIMGGTRFIGVFLSRQLVKEGHQVTLFTRGKAPITQQLPGESDTDFADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHAEIDAVDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLATAFLKVLGN+KASKQIFNISGDKYVTFDGLARACAKAGGFPEPEL+HYNPKDFDFGKKKSFPFRDQHFFASVEKAKSVLGLEP+YGLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLV+
Sbjct:    1 MARLVALQQNQLSFPPLASSLSDFNGTRLQTHIQLKRKTWKPKGSFYVSASSTKKILIMGGTRFIGVFLSRQLVKEGHQVTLFTRGKAPITQQLPGESDTDFADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHAEIDAVDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLATAFLKVLGNNKASKQIFNISGDKYVTFDGLARACAKAGGFPEPELVHYNPKDFDFGKKKSFPFRDQHFFASVEKAKSVLGLEPDYGLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVS 377
[Close]
BLAST of XM_058884546.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A9D4XNS3|A0A9D4XNS3_PEA (Variant 2 OS=Pisum sativum OX=3888 GN=KIW84_030679 PE=3 SV=1)

HSP 1 Score: 757.673 bits (1955), Expect = 0.000e+0
Identity = 369/378 (97.62%), Postives = 374/378 (98.94%), Query Frame = 0 
Query:    1 MARLVAFQQNQLSFPPLASSFSDFNGTRLQTHIQLKRKTRQPKASFYVSASSTKKILIMGGTRFIGVFLSRQLVKEGHQVTLFTRGKAPITQQLPGESDTDFADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHAEIDAVDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLATAFLKVLGNDKASKQIFNISGDKYVTFDGLARACAKAGGFPEPELIHYNPKDFDFGKKKSFPFRDQHFFASVEKAKSVLGLEPEYGLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVNV 378
            MARLVA QQNQLSFPPLASS SDFNGTRLQTHIQLKRKT +PK SFYVSASSTKKILIMGGTRFIGVFLSRQLVKEGHQVTLFTRGKAPITQQLPGESDTDFADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHAEIDAVDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLATAFLKVLGN+KASKQIFNISGDKYVTFDGLARACAKAGGFPEPEL+HYNPKDFDFGKKKSFPFRDQHFFASVEKAKSVLGLEP+YGLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLV+V
Sbjct:    1 MARLVALQQNQLSFPPLASSLSDFNGTRLQTHIQLKRKTWKPKGSFYVSASSTKKILIMGGTRFIGVFLSRQLVKEGHQVTLFTRGKAPITQQLPGESDTDFADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHAEIDAVDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLATAFLKVLGNNKASKQIFNISGDKYVTFDGLARACAKAGGFPEPELVHYNPKDFDFGKKKSFPFRDQHFFASVEKAKSVLGLEPDYGLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVSV 378
[Close]
BLAST of XM_058884546.1 vs. ExPASy TrEMBL (2024)
Match: tr|I3S8V0|I3S8V0_MEDTR (Putative NAD(P)-binding domain-containing protein OS=Medicago truncatula OX=3880 GN=25499634 PE=2 SV=1)

HSP 1 Score: 753.436 bits (1944), Expect = 0.000e+0
Identity = 367/378 (97.09%), Postives = 371/378 (98.15%), Query Frame = 0 
Query:    1 MARLVAFQQNQLSFPPLASSFSDFNGTRLQTHIQLKRKTRQPKASFYVSASSTKKILIMGGTRFIGVFLSRQLVKEGHQVTLFTRGKAPITQQLPGESDTDFADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHAEIDAVDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLATAFLKVLGNDKASKQIFNISGDKYVTFDGLARACAKAGGFPEPELIHYNPKDFDFGKKKSFPFRDQHFFASVEKAKSVLGLEPEYGLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVNV 378
            MARLVA QQNQLSFPPLASS SDFNG RLQTHIQLKRKT QPK S  VSASSTKKILIMGGTRFIGVFLSRQLVKEGHQVTLFTRGKAPITQQLPGESDTDFADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHAEIDAVDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLATAFLKVLGN+KASKQIFNISGDKYVTFDGLARACAKAGGFPEPE+IHYNPKDFDFGKKKSFPFRDQHFFASVEKAKSVLGLEP+YGLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLV+V
Sbjct:    1 MARLVALQQNQLSFPPLASSLSDFNGARLQTHIQLKRKTWQPKGSLIVSASSTKKILIMGGTRFIGVFLSRQLVKEGHQVTLFTRGKAPITQQLPGESDTDFADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHAEIDAVDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLATAFLKVLGNEKASKQIFNISGDKYVTFDGLARACAKAGGFPEPEIIHYNPKDFDFGKKKSFPFRDQHFFASVEKAKSVLGLEPDYGLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVSV 378
[Close]
BLAST of XM_058884546.1 vs. ExPASy TrEMBL (2024)
Match: tr|I3SVD7|I3SVD7_MEDTR (NAD-dependent epimerase/dehydratase domain-containing protein OS=Medicago truncatula OX=3880 PE=2 SV=1)

HSP 1 Score: 746.503 bits (1926), Expect = 0.000e+0
Identity = 364/378 (96.30%), Postives = 368/378 (97.35%), Query Frame = 0 
Query:    1 MARLVAFQQNQLSFPPLASSFSDFNGTRLQTHIQLKRKTRQPKASFYVSASSTKKILIMGGTRFIGVFLSRQLVKEGHQVTLFTRGKAPITQQLPGESDTDFADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHAEIDAVDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLATAFLKVLGNDKASKQIFNISGDKYVTFDGLARACAKAGGFPEPELIHYNPKDFDFGKKKSFPFRDQHFFASVEKAKSVLGLEPEYGLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVNV 378
            MARLVA QQNQLSFPPLASS SDFNGTRLQTHIQLKRKT QPK S  VSASSTKKILIMGGTRFIGVFLSRQLVKEGHQVTLFTRGKAPITQQLPGESDTDFADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHAEIDAVDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLATAFLKVLGN+KASKQIFNISGDKYVTFDGLARAC KAGGFPEPE+IHYNPKDFDFGKKKSFPFRDQHFFASVEKAKSVLGLEP+YGLVEG TDSYNL FGRGTFRKE DFSTDDIILGKSLV+V
Sbjct:    1 MARLVALQQNQLSFPPLASSLSDFNGTRLQTHIQLKRKTWQPKGSLIVSASSTKKILIMGGTRFIGVFLSRQLVKEGHQVTLFTRGKAPITQQLPGESDTDFADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHAEIDAVDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLATAFLKVLGNEKASKQIFNISGDKYVTFDGLARACVKAGGFPEPEIIHYNPKDFDFGKKKSFPFRDQHFFASVEKAKSVLGLEPDYGLVEGFTDSYNLGFGRGTFRKEGDFSTDDIILGKSLVSV 378
[Close]
BLAST of XM_058884546.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2K3N0B0|A0A2K3N0B0_TRIPR (Chloroplast stem-loop binding protein of 41 kDa b chloroplastic-like OS=Trifolium pratense OX=57577 GN=L195_g019693 PE=3 SV=1)

HSP 1 Score: 745.732 bits (1924), Expect = 0.000e+0
Identity = 360/378 (95.24%), Postives = 370/378 (97.88%), Query Frame = 0 
Query:    1 MARLVAFQQNQLSFPPLASSFSDFNGTRLQTHIQLKRKTRQPKASFYVSASSTKKILIMGGTRFIGVFLSRQLVKEGHQVTLFTRGKAPITQQLPGESDTDFADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHAEIDAVDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLATAFLKVLGNDKASKQIFNISGDKYVTFDGLARACAKAGGFPEPELIHYNPKDFDFGKKKSFPFRDQHFFASVEKAKSVLGLEPEYGLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVNV 378
            MA +VAFQQNQLSFPPLASS SDF GTRLQTHIQLKR+T Q K +  V+ASSTKKILIMGGTRFIGVFLSRQLVKEGHQVTLFTRGKAPITQQLPGESDTDFADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHAE+DAVDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLATAFLKVLGNDKASKQIFNISGDKYVTFDGLA+ACAKAGGFPEPE++HYNPKDFDFGKKKSFPFRDQHFFASVEKAKSVLGLEP++GLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVNV
Sbjct:    1 MASMVAFQQNQLSFPPLASSLSDFTGTRLQTHIQLKRRTWQSKGALCVTASSTKKILIMGGTRFIGVFLSRQLVKEGHQVTLFTRGKAPITQQLPGESDTDFADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHAEVDAVDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLATAFLKVLGNDKASKQIFNISGDKYVTFDGLAKACAKAGGFPEPEIVHYNPKDFDFGKKKSFPFRDQHFFASVEKAKSVLGLEPDFGLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVNV 378
[Close]
BLAST of XM_058884546.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A1S2XU19|A0A1S2XU19_CICAR (Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic OS=Cicer arietinum OX=3827 GN=LOC101504895 PE=3 SV=1)

HSP 1 Score: 737.258 bits (1902), Expect = 0.000e+0
Identity = 356/378 (94.18%), Postives = 368/378 (97.35%), Query Frame = 0 
Query:    1 MARLVAFQQNQLSFPPLASSFSDFNGTRLQTHIQLKRKTRQPKASFYVSASSTKKILIMGGTRFIGVFLSRQLVKEGHQVTLFTRGKAPITQQLPGESDTDFADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHAEIDAVDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLATAFLKVLGNDKASKQIFNISGDKYVTFDGLARACAKAGGFPEPELIHYNPKDFDFGKKKSFPFRDQHFFASVEKAKSVLGLEPEYGLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVNV 378
            MARLVAFQQNQLSFPPLASS SDF GTR QTHIQLKRKT QPK SFYVSAS+ KK+LIMGGTRFIGVFLSR LVK+GHQVTLFTRGKAPITQQLPGESDTDFADFSSKILHLKGDRKDYDFVKSSLSA+GFDVVYDINGREAEEVEPI+DALPNLEQFIYCSSAGVYLKSD+LPHAEIDAVDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLATAF+ VLGNDKASKQIFNISGDKYVTFDGLA+ACAKAGGFPEPE+IHYNPKDFDFGKKK FPFRDQHFFASVEKAKSVLGLEP++GLVEGLTDSYNLDFGRGTFRKE DFSTDDIILGKSLV+V
Sbjct:    1 MARLVAFQQNQLSFPPLASSLSDFTGTRFQTHIQLKRKTWQPKGSFYVSASTNKKVLIMGGTRFIGVFLSRLLVKQGHQVTLFTRGKAPITQQLPGESDTDFADFSSKILHLKGDRKDYDFVKSSLSAQGFDVVYDINGREAEEVEPIIDALPNLEQFIYCSSAGVYLKSDILPHAEIDAVDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLATAFVNVLGNDKASKQIFNISGDKYVTFDGLAKACAKAGGFPEPEIIHYNPKDFDFGKKKPFPFRDQHFFASVEKAKSVLGLEPDFGLVEGLTDSYNLDFGRGTFRKEPDFSTDDIILGKSLVSV 378
[Close]
BLAST of XM_058884546.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8B8LA35|A0A8B8LA35_ABRPR (Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic OS=Abrus precatorius OX=3816 GN=LOC113863641 PE=3 SV=1)

HSP 1 Score: 720.309 bits (1858), Expect = 0.000e+0
Identity = 346/378 (91.53%), Postives = 365/378 (96.56%), Query Frame = 0 
Query:    1 MARLVAFQQNQLSFPPLASSFSDFNGTRLQTHIQLKRKTRQPKASFYVSASSTKKILIMGGTRFIGVFLSRQLVKEGHQVTLFTRGKAPITQQLPGESDTDFADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHAEIDAVDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLATAFLKVLGNDKASKQIFNISGDKYVTFDGLARACAKAGGFPEPELIHYNPKDFDFGKKKSFPFRDQHFFASVEKAKSVLGLEPEYGLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVNV 378
            MAR+VA QQNQLSF PLASS SDF+GTRLQT IQLKRK  QPK SFYVSASSTKKILIMGGTRFIGVFLSR LVKEGHQVTLFTRGKAPITQQLPGE+D+D+ADFSSKILHLKGDR+D++FVKSSLSAEGFDVVYDINGREA EVEPILDALPNL+QFIYCSSAGVYLKSDLLPHAEIDAVDPKSRHKGKLETESLLQS+DVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLA AF++VLGNDKASKQ+FNI+GDKYVTFDGLARACAKAGGFPEPE+IHYNPK+FDFGKKK FPFRDQHFFASVEKAKSVLGLEPE+ LVEGL DSYNLDFGRGT+RKEADFSTDDIILGKSLV+V
Sbjct:    1 MARMVALQQNQLSFSPLASSLSDFSGTRLQTQIQLKRKIWQPKGSFYVSASSTKKILIMGGTRFIGVFLSRLLVKEGHQVTLFTRGKAPITQQLPGEADSDYADFSSKILHLKGDRQDFEFVKSSLSAEGFDVVYDINGREANEVEPILDALPNLQQFIYCSSAGVYLKSDLLPHAEIDAVDPKSRHKGKLETESLLQSRDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLARAFVQVLGNDKASKQVFNIAGDKYVTFDGLARACAKAGGFPEPEIIHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGLEPEFDLVEGLADSYNLDFGRGTYRKEADFSTDDIILGKSLVSV 378
[Close]
BLAST of XM_058884546.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445LFX6|A0A445LFX6_GLYSO (Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic OS=Glycine soja OX=3848 GN=D0Y65_007986 PE=3 SV=1)

HSP 1 Score: 716.457 bits (1848), Expect = 0.000e+0
Identity = 344/378 (91.01%), Postives = 363/378 (96.03%), Query Frame = 0 
Query:    1 MARLVAFQQNQLSFPPLASSFSDFNGTRLQTHIQLKRKTRQPKASFYVSASSTKKILIMGGTRFIGVFLSRQLVKEGHQVTLFTRGKAPITQQLPGESDTDFADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHAEIDAVDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLATAFLKVLGNDKASKQIFNISGDKYVTFDGLARACAKAGGFPEPELIHYNPKDFDFGKKKSFPFRDQHFFASVEKAKSVLGLEPEYGLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVNV 378
            MAR+VA QQNQLSF  LASS SDF+GTRLQT +Q KRK   PK SFYVSASSTKKILIMGGTRFIGVFLSR LVKEGHQVTLFTRGKAP+TQQLPGESD+D+ADFSSKILHLKGDRKD+DFVKSSLSAEGFDVVYDINGREA+EVEPILDALPNLEQFIYCSSAGVYLKSDLLPHAE DAVDPKSRHKGKLETESLLQ++ VNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLA AF++VLGN+KASK++FNISGDKYVTFDGLARACAKAGGFPEPE+IHYNPKDFDFGKKKSFPFRDQHFFASVEKAKSVLGLEPE+GLVEGL DSYNLDFGRGT+RKEADFSTDDIILGKSLV+V
Sbjct:    1 MARVVALQQNQLSFSTLASSLSDFSGTRLQTQLQFKRKQCHPKGSFYVSASSTKKILIMGGTRFIGVFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESDSDYADFSSKILHLKGDRKDFDFVKSSLSAEGFDVVYDINGREADEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHAETDAVDPKSRHKGKLETESLLQARGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLAKAFIQVLGNEKASKEVFNISGDKYVTFDGLARACAKAGGFPEPEIIHYNPKDFDFGKKKSFPFRDQHFFASVEKAKSVLGLEPEFGLVEGLADSYNLDFGRGTYRKEADFSTDDIILGKSLVSV 378
[Close]
BLAST of XM_058884546.1 vs. ExPASy TrEMBL (2024)
Match: tr|I1JR38|I1JR38_SOYBN (NAD-dependent epimerase/dehydratase domain-containing protein OS=Glycine max OX=3847 GN=GLYMA_03G230000 PE=3 SV=1)

HSP 1 Score: 716.457 bits (1848), Expect = 0.000e+0
Identity = 344/378 (91.01%), Postives = 363/378 (96.03%), Query Frame = 0 
Query:    1 MARLVAFQQNQLSFPPLASSFSDFNGTRLQTHIQLKRKTRQPKASFYVSASSTKKILIMGGTRFIGVFLSRQLVKEGHQVTLFTRGKAPITQQLPGESDTDFADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHAEIDAVDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLATAFLKVLGNDKASKQIFNISGDKYVTFDGLARACAKAGGFPEPELIHYNPKDFDFGKKKSFPFRDQHFFASVEKAKSVLGLEPEYGLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVNV 378
            MAR+VA QQNQLSF  LASS SDF+GTRLQT +Q KRK   PK SFYVSASSTKKILIMGGTRFIGVFLSR LVKEGHQVTLFTRGKAP+TQQLPGESD+D+ADFSSKILHLKGDRKD+DFVKSSLSAEGFDVVYDINGREA+EVEPILDALPNLEQFIYCSSAGVYLKSDLLPHAE DAVDPKSRHKGKLETESLLQ++ VNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLA AF++VLGN+KASK++FNISGDKYVTFDGLARACAKAGGFPEPE+IHYNPKDFDFGKKKSFPFRDQHFFASVEKAKSVLGLEPE+GLVEGL DSYNLDFGRGT+RKEADFSTDDIILGKSLV+V
Sbjct:    1 MARVVALQQNQLSFSTLASSLSDFSGTRLQTQLQFKRKQCHPKGSFYVSASSTKKILIMGGTRFIGVFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESDSDYADFSSKILHLKGDRKDFDFVKSSLSAEGFDVVYDINGREADEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHAETDAVDPKSRHKGKLETESLLQARGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLAKAFIQVLGNEKASKEVFNISGDKYVTFDGLARACAKAGGFPEPEIIHYNPKDFDFGKKKSFPFRDQHFFASVEKAKSVLGLEPEFGLVEGLADSYNLDFGRGTYRKEADFSTDDIILGKSLVSV 378
[Close]
BLAST of XM_058884546.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A371GQN5|A0A371GQN5_MUCPR (Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic (Fragment) OS=Mucuna pruriens OX=157652 GN=CSP41B PE=3 SV=1)

HSP 1 Score: 714.916 bits (1844), Expect = 0.000e+0
Identity = 344/378 (91.01%), Postives = 359/378 (94.97%), Query Frame = 0 
Query:    1 MARLVAFQQNQLSFPPLASSFSDFNGTRLQTHIQLKRKTRQPKASFYVSASSTKKILIMGGTRFIGVFLSRQLVKEGHQVTLFTRGKAPITQQLPGESDTDFADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHAEIDAVDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLATAFLKVLGNDKASKQIFNISGDKYVTFDGLARACAKAGGFPEPELIHYNPKDFDFGKKKSFPFRDQHFFASVEKAKSVLGLEPEYGLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVNV 378
            MARLVA QQNQLSF PLASS SDF GTRLQT +Q KRK  QPK SFYVSASSTKKILIMGGTRFIGVFLSR LVKEGHQVTLFTRGKAP+TQQLPGESD+D+ADFSSKILHLKGDR+D++FVKSSLSA+GFDVVYDINGREA E+EPILDALPNLEQFIYCSSAGVYLKSDLLPHAE DAVDPKSRHKGKLETESLLQSK VNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIP SGIQITQLGHVKDLA AF++VLGNDKASKQ+FNISG+KYVTFDGLARACAKAGGFPEPELIHYNPKDFDFGKKKSFPFRDQHFFAS+EKAKSVLG EPE+ LVEGL DSYNLDFGRGTFRKEADFSTDDIILGKSLV V
Sbjct:   54 MARLVALQQNQLSFSPLASSLSDFGGTRLQTQLQFKRKLWQPKGSFYVSASSTKKILIMGGTRFIGVFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESDSDYADFSSKILHLKGDRQDFEFVKSSLSAQGFDVVYDINGREANEIEPILDALPNLEQFIYCSSAGVYLKSDLLPHAETDAVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPSSGIQITQLGHVKDLARAFIQVLGNDKASKQVFNISGEKYVTFDGLARACAKAGGFPEPELIHYNPKDFDFGKKKSFPFRDQHFFASIEKAKSVLGWEPEFDLVEGLADSYNLDFGRGTFRKEADFSTDDIILGKSLVGV 431
[Close]
BLAST of XM_058884546.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9SA52|CP41B_ARATH (Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CSP41B PE=1 SV=1)

HSP 1 Score: 653.67 bits (1685), Expect = 0.000e+0
Identity = 317/376 (84.31%), Postives = 345/376 (91.76%), Query Frame = 0 
Query:    1 MARLVAFQQNQLSFPPLASSFSDFNGTRLQTHIQLKRKTRQPKASFYVSASSTKKILIMGGTRFIGVFLSRQLVKEGHQVTLFTRGKAPITQQLPGESDTDFADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHAEIDAVDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLATAFLKVLGNDKASKQIFNISGDKYVTFDGLARACAKAGGFPEPELIHYNPKDFDFGKKKSFPFRDQHFFASVEKAKSVLGLEPEYGLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLV 376
            MA+++  QQ+Q SF  L SS SDFNG +L   +Q KRK  QPK + YVSASS KKILIMGGTRFIG+FLSR LVKEGHQVTLFTRGK+PI +QLPGESD DFADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPIL+ALP LEQ+IYCSSAGVYLKSD+LPH E DAVDPKSRHKGKLETESLLQSK VNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP+P SGIQI+QLGHVKDLATAFL VLGN+KAS++IFNISG+KYVTFDGLA+ACAKAGGFPEPE++HYNPK+FDFGKKK+FPFRDQHFFASVEKAK VLG +PE+ LVEGLTDSYNLDFGRGTFRKEADF+TDD+IL K LV
Sbjct:    1 MAKMMMLQQHQPSFSLLTSSLSDFNGAKLHLQVQYKRKVHQPKGALYVSASSEKKILIMGGTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILEALPKLEQYIYCSSAGVYLKSDILPHCEEDAVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPNSGIQISQLGHVKDLATAFLNVLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFTTDDMILSKKLV 376
[Close]
BLAST of XM_058884546.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9LYA9|CP41A_ARATH (Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CSP41A PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.802e-57
Identity = 122/339 (35.99%), Postives = 180/339 (53.10%), Query Frame = 0 
Query:   46 FYVSASST---KKILIM----GGTRFIGVFLSRQLVKEGHQVTLFTRGKAPITQQLPGESDTDFADFSSKILHLKGDRKDYDF---VKSSLSAEGFDVVYDINGREAEEVEPILDALPN--LEQFIYCSSAGVYLKSDLLPHAEIDAVDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLATAFLKVLGN-DKASKQIFNISGDKYVTFDGLARACAKAGGFPEPELIHYNPKDFDFGKKKSFPFRDQHFFASVEKAKSVLGLEPEYGLVEGLTDSYNLDFGRGTFRKEADFSTDDIIL 371
            F V ASS    K +LI+    GG   IG + +++L+  GH VT+ T G    ++++       F++  S      G +  +     V + +  E FDVV D NG++ + V P++D   +  ++QF++ SSAG+Y  ++  PH E DAV   + H   +  E  L     NW S RP Y+ G  N    EEWFF R+   R +PIPGSG+Q+T + HV+DL++     + N + AS  IFN   D+ VT DG+A+ CA A G    E++HY+PK      KK+F FR+ HF+A    AK +LG E +  L E L + +      G  +KE  F  DD IL
Sbjct:   69 FTVKASSVGEKKNVLIVNTNSGGHAVIGFYFAKELLSAGHAVTILTVGDES-SEKMKKPPFNRFSEIVSG-----GGKTVWGNPANVANVVGGETFDVVLDNNGKDLDTVRPVVDWAKSSGVKQFLFISSAGIYKSTEQPPHVEGDAVKADAGH---VVVEKYLAETFGNWASFRPQYMIGSGNNKDCEEWFFDRIVRDRAVPIPGSGLQLTNISHVRDLSSMLTSAVANPEAASGNIFNCVSDRAVTLDGMAKLCAAAAG-KTVEIVHYDPKAIGVDAKKAFLFRNMHFYAEPRAAKDLLGWESKTNLPEDLKERFEEYVKIGRDKKEIKFELDDKIL 397
[Close]
BLAST of XM_058884546.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q45291|GALE_CORGL (UDP-glucose 4-epimerase OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025) OX=196627 GN=galE PE=3 SV=2)

HSP 1 Score: 56.225 bits (134), Expect = 1.679e-7
Identity = 77/313 (24.60%), Postives = 126/313 (40.26%), Query Frame = 0 
Query:   55 KILIMGGTRFIGVFLSRQLVKEGHQVTLFTRGKAPITQQLPGES---DTDFADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILDAL--PNLEQFIYCSSAGVYLKSDLLPHAEIDAVDPKSRHKG-KLETESLLQSKDVNW----TSIRPVYI---YGPLNYN-PVEEWFF---------HRLKA---GRPIPIPGSGIQITQLGHVKDLATAFLKVLGNDKASK-QIFNI-SGDKYVTFDGLARACAKAGGFPEPELIHYNPKDFDFGKKKSFPFRDQHFFASVEKAKSVLGLEPEY 339
            K+L+ GG  ++G   +  L++ GH VT+         + +P ++   + D  D   ++L   G      F   SL  E  +   +           +LDA+    +   ++ S+A  Y + D++P  E     P + +   KL  +  + S    +    TS+R   +   YG +  N  VE             HR K    G   P P  G  +    H+ DLA A +  L +++A K +IFN+ SGD Y +   +   C +  G P P  +          ++   P       AS EKAK  LG  PE+
Sbjct:    2 KLLVTGGAGYVGSVAAAVLLEHGHDVTIIDNFSTGNREAVPADARLIEGDVNDVVEEVLSEGGFEGVVHFAARSLVGESVEKPNEYWHDNVVTALTLLDAMRAHGVNNLVFSSTAATYGEPDVVPITEDMPTQPTNAYGATKLSIDYAITSYAAAFGLAATSLRYFNVAGAYGNIGENREVETHLIPLVLQVATGHREKTFMFGDDWPTP-DGTAVRDYIHILDLAKAHVLALESNEAGKHRIFNLGSGDGY-SVKQVVEMCREVTGHPIPAEV--------APRRAGDPAT---LIASSEKAKQELGWTPEH 301
[Close]
BLAST of XM_058884546.1 vs. Araport11
Match: | (Symbols: CRB, CSP41B, HIP1.3 | chloroplast RNA binding, heteroglycan-interacting protein 1.3, CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA | chr1:3015473-3018035 FORWARD LENGTH=378)

HSP 1 Score: 653.67 bits (1685), Expect = 0.000e+0
Identity = 317/376 (84.31%), Postives = 345/376 (91.76%), Query Frame = 0 
Query:    1 MARLVAFQQNQLSFPPLASSFSDFNGTRLQTHIQLKRKTRQPKASFYVSASSTKKILIMGGTRFIGVFLSRQLVKEGHQVTLFTRGKAPITQQLPGESDTDFADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHAEIDAVDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLATAFLKVLGNDKASKQIFNISGDKYVTFDGLARACAKAGGFPEPELIHYNPKDFDFGKKKSFPFRDQHFFASVEKAKSVLGLEPEYGLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLV 376
            MA+++  QQ+Q SF  L SS SDFNG +L   +Q KRK  QPK + YVSASS KKILIMGGTRFIG+FLSR LVKEGHQVTLFTRGK+PI +QLPGESD DFADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPIL+ALP LEQ+IYCSSAGVYLKSD+LPH E DAVDPKSRHKGKLETESLLQSK VNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP+P SGIQI+QLGHVKDLATAFL VLGN+KAS++IFNISG+KYVTFDGLA+ACAKAGGFPEPE++HYNPK+FDFGKKK+FPFRDQHFFASVEKAK VLG +PE+ LVEGLTDSYNLDFGRGTFRKEADF+TDD+IL K LV
Sbjct:    1 MAKMMMLQQHQPSFSLLTSSLSDFNGAKLHLQVQYKRKVHQPKGALYVSASSEKKILIMGGTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILEALPKLEQYIYCSSAGVYLKSDILPHCEEDAVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPNSGIQISQLGHVKDLATAFLNVLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFTTDDMILSKKLV 376
[Close]
BLAST of XM_058884546.1 vs. Araport11
Match: | (Symbols: CRB, CSP41B, HIP1.3 | chloroplast RNA binding, heteroglycan-interacting protein 1.3, CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA | chr1:3015806-3018035 FORWARD LENGTH=379)

HSP 1 Score: 631.328 bits (1627), Expect = 0.000e+0
Identity = 301/344 (87.50%), Postives = 323/344 (93.90%), Query Frame = 0 
Query:   33 IQLKRKTRQPKASFYVSASSTKKILIMGGTRFIGVFLSRQLVKEGHQVTLFTRGKAPITQQLPGESDTDFADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHAEIDAVDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLATAFLKVLGNDKASKQIFNISGDKYVTFDGLARACAKAGGFPEPELIHYNPKDFDFGKKKSFPFRDQHFFASVEKAKSVLGLEPEYGLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLV 376
             Q KRK  QPK + YVSASS KKILIMGGTRFIG+FLSR LVKEGHQVTLFTRGK+PI +QLPGESD DFADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPIL+ALP LEQ+IYCSSAGVYLKSD+LPH E DAVDPKSRHKGKLETESLLQSK VNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP+P SGIQI+QLGHVKDLATAFL VLGN+KAS++IFNISG+KYVTFDGLA+ACAKAGGFPEPE++HYNPK+FDFGKKK+FPFRDQHFFASVEKAK VLG +PE+ LVEGLTDSYNLDFGRGTFRKEADF+TDD+IL K LV
Sbjct:   34 CQYKRKVHQPKGALYVSASSEKKILIMGGTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILEALPKLEQYIYCSSAGVYLKSDILPHCEEDAVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPNSGIQISQLGHVKDLATAFLNVLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFTTDDMILSKKLV 377
[Close]
BLAST of XM_058884546.1 vs. Araport11
Match: | (Symbols: CSP41A | chloroplast stem-loop binding protein of 41 kDa | chr3:23327006-23328620 REVERSE LENGTH=406)

HSP 1 Score: 195.667 bits (496), Expect = 1.867e-58
Identity = 122/339 (35.99%), Postives = 180/339 (53.10%), Query Frame = 0 
Query:   46 FYVSASST---KKILIM----GGTRFIGVFLSRQLVKEGHQVTLFTRGKAPITQQLPGESDTDFADFSSKILHLKGDRKDYDF---VKSSLSAEGFDVVYDINGREAEEVEPILDALPN--LEQFIYCSSAGVYLKSDLLPHAEIDAVDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLATAFLKVLGN-DKASKQIFNISGDKYVTFDGLARACAKAGGFPEPELIHYNPKDFDFGKKKSFPFRDQHFFASVEKAKSVLGLEPEYGLVEGLTDSYNLDFGRGTFRKEADFSTDDIIL 371
            F V ASS    K +LI+    GG   IG + +++L+  GH VT+ T G    ++++       F++  S      G +  +     V + +  E FDVV D NG++ + V P++D   +  ++QF++ SSAG+Y  ++  PH E DAV   + H   +  E  L     NW S RP Y+ G  N    EEWFF R+   R +PIPGSG+Q+T + HV+DL++     + N + AS  IFN   D+ VT DG+A+ CA A G    E++HY+PK      KK+F FR+ HF+A    AK +LG E +  L E L + +      G  +KE  F  DD IL
Sbjct:   69 FTVKASSVGEKKNVLIVNTNSGGHAVIGFYFAKELLSAGHAVTILTVGDES-SEKMKKPPFNRFSEIVSG-----GGKTVWGNPANVANVVGGETFDVVLDNNGKDLDTVRPVVDWAKSSGVKQFLFISSAGIYKSTEQPPHVEGDAVKADAGH---VVVEKYLAETFGNWASFRPQYMIGSGNNKDCEEWFFDRIVRDRAVPIPGSGLQLTNISHVRDLSSMLTSAVANPEAASGNIFNCVSDRAVTLDGMAKLCAAAAG-KTVEIVHYDPKAIGVDAKKAFLFRNMHFYAEPRAAKDLLGWESKTNLPEDLKERFEEYVKIGRDKKEIKFELDDKIL 397
The following BLAST results are available for this feature:
BLAST of XM_058884546.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-12 (Blastp of Vicia villosa cv. AU Merit v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A9D4XT18|A0A9D4XT18_PEA0.000e+097.61Chloroplast stem-loop binding protein of 41 kDa b ... [more]
tr|A0A9D4XNS3|A0A9D4XNS3_PEA0.000e+097.62Variant 2 OS=Pisum sativum OX=3888 GN=KIW84_030679... [more]
tr|I3S8V0|I3S8V0_MEDTR0.000e+097.09Putative NAD(P)-binding domain-containing protein ... [more]
tr|I3SVD7|I3SVD7_MEDTR0.000e+096.30NAD-dependent epimerase/dehydratase domain-contain... [more]
tr|A0A2K3N0B0|A0A2K3N0B0_TRIPR0.000e+095.24Chloroplast stem-loop binding protein of 41 kDa b ... [more]
tr|A0A1S2XU19|A0A1S2XU19_CICAR0.000e+094.18Chloroplast stem-loop binding protein of 41 kDa b,... [more]
tr|A0A8B8LA35|A0A8B8LA35_ABRPR0.000e+091.53Chloroplast stem-loop binding protein of 41 kDa b,... [more]
tr|A0A445LFX6|A0A445LFX6_GLYSO0.000e+091.01Chloroplast stem-loop binding protein of 41 kDa b,... [more]
tr|I1JR38|I1JR38_SOYBN0.000e+091.01NAD-dependent epimerase/dehydratase domain-contain... [more]
tr|A0A371GQN5|A0A371GQN5_MUCPR0.000e+091.01Chloroplast stem-loop binding protein of 41 kDa b,... [more]
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BLAST of XM_058884546.1 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2024-08-12 (Blastp of Vicia villosa cv. AU Merit v1.0 proteins vs UniProt Swissprot)
Total hits: 3
Match NameE-valueIdentityDescription
sp|Q9SA52|CP41B_ARATH0.000e+084.31Chloroplast stem-loop binding protein of 41 kDa b,... [more]
sp|Q9LYA9|CP41A_ARATH1.802e-5735.99Chloroplast stem-loop binding protein of 41 kDa a,... [more]
sp|Q45291|GALE_CORGL1.679e-724.60UDP-glucose 4-epimerase OS=Corynebacterium glutami... [more]
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BLAST of XM_058884546.1 vs. Araport11
Analysis Date: 2024-08-12 (Blastp of Vicia villosa cv. AU Merit v1.0 proteins vs arabidopsis Araport11)
Total hits: 3
Match NameE-valueIdentityDescription
|0.000e+084.31Symbols: CRB, CSP41B, HIP1.3 | chloroplast RNA bin... [more]
|0.000e+087.50Symbols: CRB, CSP41B, HIP1.3 | chloroplast RNA bin... [more]
|1.867e-5835.99Symbols: CSP41A | chloroplast stem-loop binding pr... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vicia villosa cv. AU Merit genome v1.0
Date Performed: 2024-08-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableFUNFAMG3DSA:3.40.50.720:FF:000313coord: 52..351
e-value: 2.5E-189
score: 629.6
NoneNo IPR availableGENE3D3.40.50.720coord: 51..351
e-value: 2.8E-40
score: 140.4
NoneNo IPR availablePANTHERPTHR43725UDP-GLUCOSE 4-EPIMERASEcoord: 51..348
NoneNo IPR availableCDDcd05265SDR_a1coord: 54..307
e-value: 1.37855E-103
score: 304.213
IPR001509NAD-dependent epimerase/dehydratasePFAMPF01370Epimerasecoord: 56..273
e-value: 1.3E-13
score: 62.5
IPR036291NAD(P)-binding domain superfamilySUPERFAMILY51735NAD(P)-binding Rossmann-fold domainscoord: 53..347

Sequences
The following sequences are available for this feature:

mRNA sequence

>drVicVill.AUMerit.1.0.rna-XM_058884546.1 ID=drVicVill.AUMerit.1.0.rna-XM_058884546.1; Name=XM_058884546.1; organism=Vicia villosa; type=mRNA; length=1137bp
ATGGCTAGATTGGTGGCATTCCAACAGAATCAACTATCTTTCCCTCCTTT
AGCTTCCTCTTTTTCTGATTTCAATGGAACAAGACTTCAAACTCACATTC
AGTTGAAAAGAAAAACACGGCAGCCAAAAGCATCTTTTTATGTCTCAGCA
TCAAGCACAAAGAAAATCCTCATCATGGGAGGTACTAGATTCATTGGTGT
GTTTTTGTCTAGACAACTTGTCAAAGAAGGTCACCAGGTAACTTTATTTA
CAAGAGGAAAAGCACCTATCACTCAACAATTGCCAGGTGAATCAGACACT
GATTTTGCTGATTTTTCTTCAAAGATCTTGCATTTGAAAGGAGACAGGAA
GGACTATGATTTTGTAAAATCTAGTCTCTCAGCAGAAGGATTTGATGTTG
TTTATGACATAAATGGACGAGAGGCGGAAGAAGTTGAGCCAATACTTGAT
GCTCTCCCTAATCTTGAACAGTTCATTTACTGTTCTTCTGCTGGTGTCTA
TCTGAAATCTGATTTATTACCTCACGCCGAGATTGATGCAGTTGACCCTA
AGAGCAGGCACAAGGGAAAGCTTGAAACAGAGAGTTTGTTGCAATCAAAG
GATGTTAATTGGACTTCTATAAGGCCAGTTTACATTTATGGCCCTTTGAA
CTACAACCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAAGCCGGTCGCC
CGATTCCTATTCCCGGCTCAGGAATACAGATAACACAACTTGGTCATGTT
AAGGATTTGGCGACAGCTTTTTTGAAGGTTCTTGGAAATGATAAAGCCAG
CAAGCAGATATTCAACATCTCAGGAGACAAATATGTCACATTTGATGGAC
TAGCAAGAGCATGTGCTAAGGCCGGTGGGTTCCCTGAACCCGAGCTCATT
CACTACAATCCTAAAGACTTTGATTTCGGGAAAAAGAAGTCATTTCCCTT
TCGCGACCAGCATTTCTTTGCATCAGTGGAGAAAGCAAAGAGTGTGCTTG
GGTTGGAACCTGAATATGGGCTTGTAGAAGGTCTTACAGATTCGTATAAC
CTCGATTTCGGTAGAGGAACTTTCCGCAAAGAGGCTGATTTTTCAACCGA
TGATATAATTCTTGGCAAGAGTCTTGTTAATGTATGA
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protein sequence of drVicVill.AUMerit.1.0.rna-XM_058884546.1

>drVicVill.AUMerit.1.0.rna-XM_058884546.1 ID=drVicVill.AUMerit.1.0.rna-XM_058884546.1; Name=drVicVill.AUMerit.1.0.rna-XM_058884546.1; organism=Vicia villosa; type=polypeptide; length=378bp
MARLVAFQQNQLSFPPLASSFSDFNGTRLQTHIQLKRKTRQPKASFYVSA
SSTKKILIMGGTRFIGVFLSRQLVKEGHQVTLFTRGKAPITQQLPGESDT
DFADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILD
ALPNLEQFIYCSSAGVYLKSDLLPHAEIDAVDPKSRHKGKLETESLLQSK
DVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHV
KDLATAFLKVLGNDKASKQIFNISGDKYVTFDGLARACAKAGGFPEPELI
HYNPKDFDFGKKKSFPFRDQHFFASVEKAKSVLGLEPEYGLVEGLTDSYN
LDFGRGTFRKEADFSTDDIILGKSLVNV
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mRNA from alignment at LG6:152158045..152160840+

Legend: mRNAexonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>drVicVill.AUMerit.1.0.rna-XM_058884546.1 ID=drVicVill.AUMerit.1.0.rna-XM_058884546.1; Name=XM_058884546.1; organism=Vicia villosa; type=mRNA; length=2796bp; location=Sequence derived from: LG6:152158045..152160840+ (Vicia villosa
CATTTCACAACTCTCTATTCTTCTTTTTCTATAAGTTTTCTGTTCTAACA
CTCTCACCAAAGAGAAAGTTCAAATCAAAAAGAGAGTGAGAGACAGAAAA
TTTCAGTGAGAAAAATGGGTTTTGCTAGTTTTATTCCATGCATTTTTATG
CTTATTAATCAACTAGCATATTCTGGGATGAACGTTACGTCCAAGCTTGC
AATTGTTGGAGGAATGAACCCACTAGTCCTTGTGGCTTATAGGCAAATTT
TTGGAACTGTGGCCATAGCTCCATTTGCTTATTGGCTTGAACGGTAATTC
ATATACTTGCATGCATGCttaaaaaatgaatataatattgatttttataa
tcatacatacattattaaaaaatgttgaaatattgaCAGAAATTTAAGAC
ATGTTTTTAGTATAGTGATGTTGTTTTCTTCTTTATATTCTAGTTCTATT
TCATATGCATAATGATGATGCATGCATGCATCTATGATATTCAGATTCAA
AATCAAGTAGAGTTTGGATGTACTTTGATTTTGACAATGACCTCAATATT
GTCCTTTTTAGCCATTTTGAGTAAATTAATGGATTTTCATTCAACAATAC
AAAAATGTTttttcaacaaaatatttttagcCTTGAAAAAATTTGTGAGA
GCTCTTTCAGCAAAGATGCATGCTCTCTGATGAACTTCAAGAAAGGTTAT
TAATTCTTCACAACCTTCAACAACAAGATTCaatacacaaacaaacaaca
tTGAAGTTTTGCATAGACATTCTAAAAACAGAACACTGATGACATGCATG
TTTGACGCGTTGTGGGATTTGATTGTTTTTACGTAACGTGACAGAAACTA
TATACTTTTCCAGACAAGTGATATAATAGACGGTTACACTTTTTTTTCTG
AAATTTTATAGAGTATTACTAATATGCAAAATATATAGTAGaattttaat
tatgcaaaatgccaatattttcattatttttttttgtctaaCTTCTAACA
GAAACATTTTCGGTGGAAATTGTCTGCTTGTTCATTAATAGCATGCATTa
tcttttgtgattttttttgtctCAATACTGAAAATAAAcattaatatttt
tgtattttatatttaaattttattcaagTACTTTTGTTTTGTCTCTTCCG
CAGTGATATAGTTCCAAGGATGACAAAGCGTATAATGATACAAATATTTC
TATCTTCAGTAACAGGGTACAACcttcaatttatttttctttcttttatt
tattttgtgaatattattatgtgactaattaaaatattttaatgcaGGGT
CACAGGAAATCAGGTTCTATATTTTGTGGGACTAAAATATTCAACGGCCA
CAATTGCTTGTGCTCTAACAAATTTGCTGCCAGCTTTCACATTTGTCCTT
GCAGTCCTCTTCAGGtaataattaattcaattaaattagtattctaataa
ttaattagaaaaataagatttttttttttatggttatTGATGTTAGGCAA
GAGAATTTGGGCATAAGGACGAAAAGAGGTATAGCAAAGGTGGTAGGAAC
AATGTTGTGTGTGGGAGGAGCAATCTTGTTATCATTCTACCATGGTCAAG
TGATTGGAATTGGCCAATCAAGTATCCACTGGAGCTATGCCGAGAAGCTT
CAAAGTGGTGGTGATAGCTCTGGTTCTTCGGGAAGCTCGCTTCTAGGCCC
TGTTCTCTTGATTCTTAGTGCTCTCATTTGGTCCTTATGGTTCATAATTC
AAGTAAGCGCATTCTCGTTAAATATTATGTTATCGTATCTGCGTTTGTGT
CTGTGTCTGTGTCAGTGATTCATACTTAAAGATACTTTTGTTGCTAATTT
CAGGCGGATATGAGCAAGAATTTTCCAGTGCCATATACAAGCACAACCTA
CATGTGTTTCTTGGCCAGCATCCAGTGTGTGTTCATAGCTTTGTGTTTTG
ATCATAGTGCTTCGTCTTGGTCACTCCGTAATGCTATGAGAATTGTCTCT
TCTGTTTACACGGTACATATTTAACTGTGTTTTAGTTAAATTTTAATCAG
ATTTTGCTATCGTGAAATAacgcttttttttcattttattttcataaatt
aaatatattttttcattagtTATGACGGTGAGGTTAATTTATTTTCAGGG
AGTAATTTGCACCGCACTGACATATTGTTTGATATCATGGACGATAGAGA
GAAAAGGGCCGCTTTATGTGTCCGTATTCACTCCACTGCAGCTTATTCTT
ACCGCGATTATTAGCTGGGCTTTTCTCAGTGAACAGTTATACCTTGGCAC
TGCACTTGGGTCATTGCTGATTGTTTTCGGGCTTTATGGTGTGCTATGGG
GTAAGAGCCAGGAAGCTGATACCAACAAACTGGAAGAGGCTAGTGATCAA
GATGAAGGTGTTAAGAGAGATGATATGGAGATGCAGTCTTACGTAATGCC
ATTATCCAATGGTAATGGTCATGGTCATAGTAATGGTAATGGTAATGGTC
ACATGTGATGTGATGTGATGGTGTTACTTAATTAGTTAATATATTTATGG
ACAAGGATGGGTCATGTGATATTATgcatgtatgatgatgatgaggagaa
AATTGAAGATTGGGTTATTAATTTGGGTTTCGgtttacttgtttgttttt
ttctgTGAGGAAAATTAATGTAATATACATGATGGTCAAATTTGAAATCC
TATGGTTACTGTTGGGTACTTTCTGTCACATTTGAAAGTGATTCATAACT
TATTATGTATCAAACTATCAACTTTGAAGTTATTTTTAAAACTCTA
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Coding sequence (CDS) from alignment at LG6:152158045..152160840+

>drVicVill.AUMerit.1.0.rna-XM_058884546.1 ID=drVicVill.AUMerit.1.0.rna-XM_058884546.1; Name=XM_058884546.1; organism=Vicia villosa; type=CDS; length=1134bp; location=Sequence derived from: LG6:152158045..152160840+ (Vicia villosa
ATGGGTTTTGCTAGTTTTATTCCATGCATTTTTATGCTTATTAATCAACT
AGCATATTCTGGGATGAACGTTACGTCCAAGCTTGCAATTGTTGGAGGAA
TGAACCCACTAGTCCTTGTGGCTTATAGGCAAATTTTTGGAACTGTGGCC
ATAGCTCCATTTGCTTATTGGCTTGAACGTGATATAGTTCCAAGGATGAC
AAAGCGTATAATGATACAAATATTTCTATCTTCAGTAACAGGGGTCACAG
GAAATCAGGTTCTATATTTTGTGGGACTAAAATATTCAACGGCCACAATT
GCTTGTGCTCTAACAAATTTGCTGCCAGCTTTCACATTTGTCCTTGCAGT
CCTCTTCAGGCAAGAGAATTTGGGCATAAGGACGAAAAGAGGTATAGCAA
AGGTGGTAGGAACAATGTTGTGTGTGGGAGGAGCAATCTTGTTATCATTC
TACCATGGTCAAGTGATTGGAATTGGCCAATCAAGTATCCACTGGAGCTA
TGCCGAGAAGCTTCAAAGTGGTGGTGATAGCTCTGGTTCTTCGGGAAGCT
CGCTTCTAGGCCCTGTTCTCTTGATTCTTAGTGCTCTCATTTGGTCCTTA
TGGTTCATAATTCAAGCGGATATGAGCAAGAATTTTCCAGTGCCATATAC
AAGCACAACCTACATGTGTTTCTTGGCCAGCATCCAGTGTGTGTTCATAG
CTTTGTGTTTTGATCATAGTGCTTCGTCTTGGTCACTCCGTAATGCTATG
AGAATTGTCTCTTCTGTTTACACGGGAGTAATTTGCACCGCACTGACATA
TTGTTTGATATCATGGACGATAGAGAGAAAAGGGCCGCTTTATGTGTCCG
TATTCACTCCACTGCAGCTTATTCTTACCGCGATTATTAGCTGGGCTTTT
CTCAGTGAACAGTTATACCTTGGCACTGCACTTGGGTCATTGCTGATTGT
TTTCGGGCTTTATGGTGTGCTATGGGGTAAGAGCCAGGAAGCTGATACCA
ACAAACTGGAAGAGGCTAGTGATCAAGATGAAGGTGTTAAGAGAGATGAT
ATGGAGATGCAGTCTTACGTAATGCCATTATCCAATGGTAATGGTCATGG
TCATAGTAATGGTAATGGTAATGGTCACATGTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001509Epimerase_deHydtase
IPR036291NAD(P)-bd_dom_sf