Vigst.04G197600.01
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vigst.04G197600.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A7J7BYM8|A0A7J7BYM8_TRIWF (Nucleolar protein 10 OS=Tripterygium wilfordii OX=458696 GN=HS088_TW22G00696 PE=3 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 2.901e-37 Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 0 Query: 1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQQPPPKY 64
MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDD YS+QRV+LKKRFGLLPTQQPPPKY
Sbjct: 1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 64
BLAST of Vigst.04G197600.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A6J1B6K5|A0A6J1B6K5_9ROSI (Nucleolar protein 10 OS=Herrania umbratica OX=108875 GN=LOC110424568 PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.336e-36 Identity = 59/64 (92.19%), Postives = 63/64 (98.44%), Query Frame = 0 Query: 1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQQPPPKY 64
MYLQFYINENGDKVYTTKKESP+G+PTQSAHPARFSPDD YS+QRV+LKKRFGLLPTQQPPPKY
Sbjct: 1 MYLQFYINENGDKVYTTKKESPVGMPTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 64
BLAST of Vigst.04G197600.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2G9GIP1|A0A2G9GIP1_9LAMI (Nucleolar protein 10 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_22395 PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 1.837e-36 Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 0 Query: 1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQQPPPKY 64
MYLQFYINENGDKVYTTKKESPLGL TQSAHPARFSPDD YS+QRV+LKKRFGLLPTQQPPPKY
Sbjct: 1 MYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 64
BLAST of Vigst.04G197600.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A7J7CYK9|A0A7J7CYK9_TRIWF (Nucleolar protein 10 OS=Tripterygium wilfordii OX=458696 GN=HS088_TW12G00152 PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 1.837e-36 Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 0 Query: 1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQQPPPKY 64
MYLQFYINENGDKVYTTKKESPLGL TQSAHPARFSPDD YS+QRV+LKKRFGLLPTQQPPPKY
Sbjct: 1 MYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 64
BLAST of Vigst.04G197600.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8B8L9R1|A0A8B8L9R1_ABRPR (Nucleolar protein 10 OS=Abrus precatorius OX=3816 GN=LOC113863537 PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 1.837e-36 Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 0 Query: 1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQQPPPKY 64
MYLQFYINENGDKVYTTKKESPLGL TQSAHPARFSPDD YS+QRV+LKKRFGLLPTQQPPPKY
Sbjct: 1 MYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 64
BLAST of Vigst.04G197600.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A061GKM2|A0A061GKM2_THECC (Nucleolar protein 10 OS=Theobroma cacao OX=3641 GN=TCM_029425 PE=3 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 2.322e-36 Identity = 59/64 (92.19%), Postives = 63/64 (98.44%), Query Frame = 0 Query: 1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQQPPPKY 64
MYLQFYINENGDKVYTTKKESP+G+PTQSAHPARFSPDD YS+QRV+LKKRFGLLPTQQPPPKY
Sbjct: 76 MYLQFYINENGDKVYTTKKESPVGMPTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 139
BLAST of Vigst.04G197600.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445LCI7|A0A445LCI7_GLYSO (Nucleolar protein 10 OS=Glycine soja OX=3848 GN=D0Y65_007356 PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 2.946e-36 Identity = 59/64 (92.19%), Postives = 63/64 (98.44%), Query Frame = 0 Query: 1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQQPPPKY 64
MYLQFYIN+NGDKVYTTKKESP+GLPTQSAHPARFSPDD YS+QRV+LKKRFGLLPTQQPPPKY
Sbjct: 1 MYLQFYINDNGDKVYTTKKESPVGLPTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 64
BLAST of Vigst.04G197600.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0R4J2W3|A0A0R4J2W3_SOYBN (Nucleolar protein 10 OS=Glycine max OX=3847 GN=100306376 PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 2.946e-36 Identity = 59/64 (92.19%), Postives = 63/64 (98.44%), Query Frame = 0 Query: 1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQQPPPKY 64
MYLQFYIN+NGDKVYTTKKESP+GLPTQSAHPARFSPDD YS+QRV+LKKRFGLLPTQQPPPKY
Sbjct: 1 MYLQFYINDNGDKVYTTKKESPVGLPTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 64
BLAST of Vigst.04G197600.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A804HTT8|A0A804HTT8_MUSAM (Nucleolar protein 10 OS=Musa acuminata subsp. malaccensis OX=214687 GN=103992599 PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 3.113e-36 Identity = 59/64 (92.19%), Postives = 62/64 (96.88%), Query Frame = 0 Query: 1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQQPPPKY 64
MYLQFYINENGDKVYTTKKESPLG+ TQSAHPARFSPDD YS+QRV+LKKRFGLLPTQQPPPKY
Sbjct: 1 MYLQFYINENGDKVYTTKKESPLGMATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 64
BLAST of Vigst.04G197600.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A6P6BJN5|A0A6P6BJN5_DURZI (Nucleolar protein 10 OS=Durio zibethinus OX=66656 GN=LOC111318660 PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 3.288e-36 Identity = 59/64 (92.19%), Postives = 62/64 (96.88%), Query Frame = 0 Query: 1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQQPPPKY 64
MYLQFYINENGDKVYTTKKESPLG+PTQSAHPARFSPDD YS+QR +LKKRFGLLPTQQPPPKY
Sbjct: 1 MYLQFYINENGDKVYTTKKESPLGMPTQSAHPARFSPDDKYSRQRFLLKKRFGLLPTQQPPPKY 64
BLAST of Vigst.04G197600.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q93XX8|NOP10_ARATH (H/ACA ribonucleoprotein complex subunit 3-like protein OS=Arabidopsis thaliana OX=3702 GN=At2g20490 PE=3 SV=2) HSP 1 Score: 111.309 bits (277), Expect = 2.717e-33 Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = 0 Query: 1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQQPPPKY 64
MYLQ YINE G+KVYTTKKESPLGL T+SAHPARFSPDD YSKQRV+LKKRFGLLPTQ P +Y
Sbjct: 1 MYLQCYINEKGEKVYTTKKESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQNAPLQY 64
BLAST of Vigst.04G197600.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q6DRH5|NOP10_DANRE (H/ACA ribonucleoprotein complex subunit 3 OS=Danio rerio OX=7955 GN=nop10 PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 5.729e-27 Identity = 44/62 (70.97%), Postives = 51/62 (82.26%), Query Frame = 0 Query: 1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQQPPP 62
M+LQFY+NENG++VYT KK P G PT SAHPARFSPDD +S+ RV +KKRFGLL TQQP P
Sbjct: 1 MFLQFYLNENGERVYTLKKVDPSGQPTSSAHPARFSPDDKFSRHRVTIKKRFGLLLTQQPRP 62
BLAST of Vigst.04G197600.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9V5P6|NOP10_DROME (H/ACA ribonucleoprotein complex subunit 3 OS=Drosophila melanogaster OX=7227 GN=CG7637 PE=2 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 2.643e-25 Identity = 43/64 (67.19%), Postives = 51/64 (79.69%), Query Frame = 0 Query: 1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQQPPPKY 64
MYL + INENGD+VYT KK + G PT SAHPARFSP+D YS+QR+ +KKRFGLL TQ+P P Y
Sbjct: 1 MYLMYTINENGDRVYTLKKRTEDGRPTLSAHPARFSPEDKYSRQRLTIKKRFGLLLTQKPEPIY 64
BLAST of Vigst.04G197600.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9CQS2|NOP10_MOUSE (H/ACA ribonucleoprotein complex subunit 3 OS=Mus musculus OX=10090 GN=Nop10 PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 3.935e-24 Identity = 40/62 (64.52%), Postives = 49/62 (79.03%), Query Frame = 0 Query: 1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQQPPP 62
M+LQ+Y+NE GD+VYT KK P+G T SAHPARFSPDD YS+ R+ +KKRF +L TQQP P
Sbjct: 1 MFLQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQPRP 62
BLAST of Vigst.04G197600.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9NPE3|NOP10_HUMAN (H/ACA ribonucleoprotein complex subunit 3 OS=Homo sapiens OX=9606 GN=NOP10 PE=1 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 3.935e-24 Identity = 40/62 (64.52%), Postives = 49/62 (79.03%), Query Frame = 0 Query: 1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQQPPP 62
M+LQ+Y+NE GD+VYT KK P+G T SAHPARFSPDD YS+ R+ +KKRF +L TQQP P
Sbjct: 1 MFLQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQPRP 62
BLAST of Vigst.04G197600.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q54J26|NOP10_DICDI (H/ACA ribonucleoprotein complex subunit 3 OS=Dictyostelium discoideum OX=44689 GN=nop10 PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 9.412e-22 Identity = 39/64 (60.94%), Postives = 50/64 (78.12%), Query Frame = 0 Query: 1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQQPPPKY 64
M+L +Y +++G +VYT KKESP T SAHPARFS DD YS++R+ LKKRFGLL TQQPP ++
Sbjct: 1 MHLMYYNDKDGQRVYTLKKESPNHEATYSAHPARFSVDDKYSRERIALKKRFGLLLTQQPPLEF 64
BLAST of Vigst.04G197600.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9P7M5|NOP10_SCHPO (H/ACA ribonucleoprotein complex subunit nop10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=nop10 PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.055e-20 Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 0 Query: 1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQQPPPKY 64
M+L +Y+N+ G +VYT KK SP G T+S+HPARFSPDD YS+QR LKKRF +L TQ P Y
Sbjct: 1 MHLMYYLNDEGKRVYTLKKVSPDGRVTKSSHPARFSPDDKYSRQRYTLKKRFHVLLTQLPAKPY 64
BLAST of Vigst.04G197600.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9XVR8|NOP10_CAEEL (Putative H/ACA ribonucleoprotein complex subunit 3 OS=Caenorhabditis elegans OX=6239 GN=nola-3 PE=3 SV=2) HSP 1 Score: 77.411 bits (189), Expect = 8.749e-20 Identity = 34/59 (57.63%), Postives = 48/59 (81.36%), Query Frame = 0 Query: 1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQQ 59
M+L+++++EN +VYT K+ +P G T +AHPARFSP+D SK R+I+KKRFGLLPTQ+
Sbjct: 1 MFLRYFLDENQQRVYTLKRTAPSGEQTLTAHPARFSPEDKNSKYRIIIKKRFGLLPTQK 59
BLAST of Vigst.04G197600.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q6BQP3|NOP10_DEBHA (H/ACA ribonucleoprotein complex subunit NOP10 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=NOP10 PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.243e-19 Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 0 Query: 1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQ 58
M+L + + +G +VYT K + G T+SAHPARFSPDD YS+QRV LKKRFGLLPTQ
Sbjct: 1 MHLMYTLGPDGKRVYTLNKTTSDGEITKSAHPARFSPDDKYSRQRVTLKKRFGLLPTQ 58
BLAST of Vigst.04G197600.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q6Q547|NOP10_YEAST (H/ACA ribonucleoprotein complex subunit NOP10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=NOP10 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.552e-18 Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = 0 Query: 1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQ 58
M+L + + +G ++YT KK + G T+SAHPARFSPDD YS+QRV LKKRFGL+P Q
Sbjct: 1 MHLMYTLGPDGKRIYTLKKVTESGEITKSAHPARFSPDDKYSRQRVTLKKRFGLVPGQ 58
BLAST of Vigst.04G197600.01 vs. Araport11
Match: | (Symbols: NOP10, EDA27 | EMBRYO SAC DEVELOPMENT ARREST 27 | chr2:8831897-8832723 FORWARD LENGTH=64) HSP 1 Score: 111.694 bits (278), Expect = 2.051e-34 Identity = 54/65 (83.08%), Postives = 58/65 (89.23%), Query Frame = 0 Query: 1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQQPPPKY* 65
MYLQ YINE G+KVYTTKKESPLGL T+SAHPARFSPDD YSKQRV+LKKRFGLLPTQ P +Y*
Sbjct: 1 MYLQCYINEKGEKVYTTKKESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQNAPLQY* 65
BLAST of Vigst.04G197600.01 vs. Araport11
Match: | (Symbols: NOP10, EDA27 | EMBRYO SAC DEVELOPMENT ARREST 27 | chr2:8831897-8832723 FORWARD LENGTH=64) HSP 1 Score: 111.694 bits (278), Expect = 2.051e-34 Identity = 54/65 (83.08%), Postives = 58/65 (89.23%), Query Frame = 0 Query: 1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQQPPPKY* 65
MYLQ YINE G+KVYTTKKESPLGL T+SAHPARFSPDD YSKQRV+LKKRFGLLPTQ P +Y*
Sbjct: 1 MYLQCYINEKGEKVYTTKKESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQNAPLQY* 65
BLAST of Vigst.04G197600.01 vs. Araport11
Match: | (Symbols: NOP10, EDA27 | EMBRYO SAC DEVELOPMENT ARREST 27 | chr2:8831897-8832723 FORWARD LENGTH=63) HSP 1 Score: 105.531 bits (262), Expect = 5.839e-32 Identity = 53/65 (81.54%), Postives = 57/65 (87.69%), Query Frame = 0 Query: 1 MYLQFYINENGDKVYTTKKESPLGLPTQSAHPARFSPDDVYSKQRVILKKRFGLLPTQQPPPKY* 65
MYLQ YINE G+KVYTTK ESPLGL T+SAHPARFSPDD YSKQRV+LKKRFGLLPTQ P +Y*
Sbjct: 1 MYLQCYINEKGEKVYTTK-ESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQNAPLQY* 64 The following BLAST results are available for this feature:
BLAST of Vigst.04G197600.01 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-17 (Blastp of Vigna stipulacea acc. JP252948 v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of Vigst.04G197600.01 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2024-08-17 (Blastp of Vigna stipulacea acc. JP252948 v1.0 proteins vs UniProt Swissprot) Total hits: 10 Position : 0 Zoom : x 1
BLAST of Vigst.04G197600.01 vs. Araport11
Analysis Date: 2024-08-17 (Blastp of Vigna stipulacea acc. JP252948 v1.0 proteins vs arabidopsis Araport11) Total hits: 3 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Vigna stipulacea acc. JP252948 genome v1.0
Date Performed: 2024-08-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >drVigStip.JP252948.2.0.Vigst.04G197600.01 ID=drVigStip.JP252948.2.0.Vigst.04G197600.01; Name=Vigst.04G197600.01; organism=Vigna stipulacea; type=mRNA; length=195bpback to top protein sequence of drVigStip.JP252948.2.0.Vigst.04G197600.01 >drVigStip.JP252948.2.0.Vigst.04G197600.01 ID=drVigStip.JP252948.2.0.Vigst.04G197600.01; Name=drVigStip.JP252948.2.0.Vigst.04G197600.01; organism=Vigna stipulacea; type=polypeptide; length=65bpback to top mRNA from alignment at Chr04:32270024..32272234- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>drVigStip.JP252948.2.0.Vigst.04G197600.01 ID=drVigStip.JP252948.2.0.Vigst.04G197600.01; Name=Vigst.04G197600.01; organism=Vigna stipulacea; type=mRNA; length=2211bp; location=Sequence derived from: Chr04:32270024..32272234- (Vigna stipulaceaback to top Coding sequence (CDS) from alignment at Chr04:32270024..32272234- >drVigStip.JP252948.2.0.Vigst.04G197600.01 ID=drVigStip.JP252948.2.0.Vigst.04G197600.01; Name=Vigst.04G197600.01; organism=Vigna stipulacea; type=CDS; length=195bp; location=Sequence derived from: Chr04:32270024..32272234- (Vigna stipulaceaback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|