Vigst.04G256200.01

Transcript Overview
NameVigst.04G256200.01
Unique NamedrVigStip.JP252948.2.0.Vigst.04G256200.01
TypemRNA
OrganismVigna stipulacea ()
Sequence length552
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr04chromosomeChr04:37663286..37664241 -Vigna stipulacea acc. JP252948 genome v2.a1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vstvvaR430Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvvaR485Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvvaR497Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvstL0272Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
avjvstL249Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvstL305Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anvstL0475Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvstL0478Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
avjvstL404Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anvstL0697Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvstL0753Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvstL0919Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvstL0920Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvstL1249Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
pvvstL036Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
carvstL214Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
psvstL234Pisum sativum Cameor genome v1aPisum sativum
carvstL342Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
psvstL634Pisum sativum Cameor genome v1aPisum sativum
carvstL722Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
pvvstL674Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
vstvstL061Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvstR254Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vrvvstL255Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvstL444Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vstvuR307Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vfhvstL637Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvstL656Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vstvumR325Vigna umbellata FF25 genome v1.0Vigna umbellata
vstvuR356Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vstvumR346Vigna umbellata FF25 genome v1.0Vigna umbellata
vssvstL609Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvstL615Vicia sativa cv. Studenica genome v1.0Vicia sativa
vstvumR395Vigna umbellata FF25 genome v1.0Vigna umbellata
vssvstL880Vicia sativa cv. Studenica genome v1.0Vicia sativa
vasvstL078Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvstL372Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvstL611Vigna angularis cv. Shumari genome v1.a1Vigna angularis

Orthologs
Gene/TranscriptAssemblySpecies
evm.Ca_v2.0_09016Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
rna-TanjilR_07464Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vfaba.Hedin2.R1.3g091160.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
XM_058923078.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vigun07g138600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-XM_014657193.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-TanjilR_07420Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-TanjilR_17620Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigan.08G180000.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Psat6g153000.1Pisum sativum Cameor genome v1aPisum sativum
jg3000.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-TanjilR_29143Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigan.01G512100.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Va01G096790.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-TanjilR_15633Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigan.04G374600.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
rna-TanjilR_02718Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Phvul.007G202200.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vigun01g209000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Phvul.001G224600.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vum_01G03855.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vum_04G02869.1Vigna umbellata FF25 genome v1.0Vigna umbellata
evm.Ca_v2.0_19900Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
rna-XM_014640110.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vum_08G01438.1Vigna umbellata FF25 genome v1.0Vigna umbellata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigst.08G140200.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vigst.01G356900.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigst.04G256200drVigStip.JP252948.2.0.Vigst.04G256200Vigna stipulaceagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
nbis-exon-64114drVigStip.JP252948.2.0.nbis-exon-64114Vigna stipulaceaexon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
three_prime_utr-9364drVigStip.JP252948.2.0.three_prime_utr-9364Vigna stipulaceathree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds-61907drVigStip.JP252948.2.0.cds-61907Vigna stipulaceaCDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
five_prime_utr-9929drVigStip.JP252948.2.0.five_prime_utr-9929Vigna stipulaceafive_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
drVigStip.JP252948.2.0.Vigst.04G256200.01drVigStip.JP252948.2.0.Vigst.04G256200.01Vigna stipulaceapolypeptide
drVigStip.JP252948.2.0.Vigst.04G256200.01drVigStip.JP252948.2.0.Vigst.04G256200.01-proteinVigna stipulaceapolypeptide


Homology
[Close]
BLAST of Vigst.04G256200.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A1S3TPB2|A0A1S3TPB2_VIGRR (Transcription factor bHLH149 OS=Vigna radiata var. radiata OX=3916 GN=LOC106757439 PE=4 SV=1)

HSP 1 Score: 344.739 bits (883), Expect = 2.441e-119
Identity = 173/181 (95.58%), Postives = 176/181 (97.24%), Query Frame = 0 
Query:    1 MASFHSNLHSVTSSQQSNHKKRRKLAHHASLASAPSPWTSQTEHRIYATNLLHALRRNSPSAASDVRAAADRALAATAKGRTRWSRAILANPFGRWKGRHHMKARKSRAGLMKKRTPEIRRTAPPLQKKARSLGRLIPGCRRVSFPKLLEEAGDYISALEMQVRAMTALADLLAGGPSPPA 181
            MASFH NLHSVTSSQQSNHKKRRKL HHAS   APSPWTSQTEHRIYATNLLHALRR+SPSAASD+RAAADRALAATAKGRTRWSRAILANPFGRWKGRHHMKARKSRAGLMKKRTPEIRRTAPPLQKKARSLGRL+PGCRRVSFPKLLEEAGDYISALEMQVRAMTALADLLAGGPSPPA
Sbjct:    1 MASFHPNLHSVTSSQQSNHKKRRKLPHHAS---APSPWTSQTEHRIYATNLLHALRRSSPSAASDIRAAADRALAATAKGRTRWSRAILANPFGRWKGRHHMKARKSRAGLMKKRTPEIRRTAPPLQKKARSLGRLVPGCRRVSFPKLLEEAGDYISALEMQVRAMTALADLLAGGPSPPA 178
[Close]
BLAST of Vigst.04G256200.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0S3RZV8|A0A0S3RZV8_PHAAN (BHLH domain-containing protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.04G374600 PE=4 SV=1)

HSP 1 Score: 343.584 bits (880), Expect = 7.329e-119
Identity = 174/181 (96.13%), Postives = 176/181 (97.24%), Query Frame = 0 
Query:    1 MASFHSNLHSVTSSQQSNHKKRRKLAHHASLASAPSPWTSQTEHRIYATNLLHALRRNSPSAASDVRAAADRALAATAKGRTRWSRAILANPFGRWKGRHHMKARKSRAGLMKKRTPEIRRTAPPLQKKARSLGRLIPGCRRVSFPKLLEEAGDYISALEMQVRAMTALADLLAGGPSPPA 181
            MASFH NLHSVTSSQQSNHKKRRK  HHASLASAPSPWTSQTEHRIYATNLLHALRRNSP+AASDVRAAADRALAATAKGRTRWSRAILANPFGRWK RHHMKARKSRAGLMKKRTPEIRRTAPPLQKKARSLGRLIPGCR+VSFPKLLEEAGDYISALEMQVRAMTALADLLAGGPS PA
Sbjct:    1 MASFHPNLHSVTSSQQSNHKKRRK--HHASLASAPSPWTSQTEHRIYATNLLHALRRNSPAAASDVRAAADRALAATAKGRTRWSRAILANPFGRWKRRHHMKARKSRAGLMKKRTPEIRRTAPPLQKKARSLGRLIPGCRKVSFPKLLEEAGDYISALEMQVRAMTALADLLAGGPSSPA 179
[Close]
BLAST of Vigst.04G256200.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0L9U8V9|A0A0L9U8V9_PHAAN (BHLH domain-containing protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan03g266200 PE=4 SV=1)

HSP 1 Score: 343.584 bits (880), Expect = 7.329e-119
Identity = 174/181 (96.13%), Postives = 176/181 (97.24%), Query Frame = 0 
Query:    1 MASFHSNLHSVTSSQQSNHKKRRKLAHHASLASAPSPWTSQTEHRIYATNLLHALRRNSPSAASDVRAAADRALAATAKGRTRWSRAILANPFGRWKGRHHMKARKSRAGLMKKRTPEIRRTAPPLQKKARSLGRLIPGCRRVSFPKLLEEAGDYISALEMQVRAMTALADLLAGGPSPPA 181
            MASFH NLHSVTSSQQSNHKKRRK  HHASLASAPSPWTSQTEHRIYATNLLHALRRNSP+AASDVRAAADRALAATAKGRTRWSRAILANPFGRWK RHHMKARKSRAGLMKKRTPEIRRTAPPLQKKARSLGRLIPGCR+VSFPKLLEEAGDYISALEMQVRAMTALADLLAGGPS PA
Sbjct:    1 MASFHPNLHSVTSSQQSNHKKRRK--HHASLASAPSPWTSQTEHRIYATNLLHALRRNSPAAASDVRAAADRALAATAKGRTRWSRAILANPFGRWKRRHHMKARKSRAGLMKKRTPEIRRTAPPLQKKARSLGRLIPGCRKVSFPKLLEEAGDYISALEMQVRAMTALADLLAGGPSSPA 179
[Close]
BLAST of Vigst.04G256200.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0AA86RYD3|A0AA86RYD3_9FABA (Uncharacterized protein OS=Sphenostylis stenocarpa OX=92480 GN=AYBTSS11_LOCUS2391 PE=4 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 1.779e-100
Identity = 150/181 (82.87%), Postives = 158/181 (87.29%), Query Frame = 0 
Query:    1 MASFHSNLHSVTSSQQSNHKKRRKLAHHASLASAPSPWTSQTEHRIYATNLLHALRRNSPSAASDVRAAADRALAATAKGRTRWSRAILANPFGRWKGRHHMKARKSRAGLMKKRTPEIRRTAPPLQKKARSLGRLIPGCRRVSFPKLLEEAGDYISALEMQVRAMTALADLLAGGPSPPA 181
            MASF+SNLHSVT+SQQSNHKKRRKL HHASL   P+ WTSQTEHRIYA+NLLHALRRNSP AA  VRA ADR LA+ AKGRTRWSRAILANPFGRWK RH  + RK   GLMKKRTPEIRRT PPLQKK R LGRLIPGCR+VSFPKLLEEAGDYISAL+MQVRAMTALADLLAGGP P A
Sbjct:    1 MASFNSNLHSVTTSQQSNHKKRRKLTHHASLT--PARWTSQTEHRIYASNLLHALRRNSPVAARHVRADADRTLASAAKGRTRWSRAILANPFGRWKQRHLKRIRKPGTGLMKKRTPEIRRTVPPLQKKVRVLGRLIPGCRKVSFPKLLEEAGDYISALKMQVRAMTALADLLAGGPLPLA 179
[Close]
BLAST of Vigst.04G256200.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4D6MDA8|A0A4D6MDA8_VIGUN (Myc-type OS=Vigna unguiculata OX=3917 GN=DEO72_LG6g3132 PE=4 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 5.382e-99
Identity = 166/181 (91.71%), Postives = 171/181 (94.48%), Query Frame = 0 
Query:    1 MASFHSNLHSVTSSQQSNHKKRRKLAHHASLASAPSPWTSQTEHRIYATNLLHALRRNSPSAASDVRAAADRALAATAKGRTRWSRAILANPFGRWKGRHHMKARKSRAGLMKKRTPEIRRTAPPLQKKARSLGRLIPGCRRVSFPKLLEEAGDYISALEMQVRAMTALADLLAGGPSPPA 181
            MASF  NLHSVTSSQQSNHKKRRKLAHHASLA  P+PWTSQTEHRIYATNLLHALRRNSP+AASDVRAAADRALAATAK RTRWSRAILANPFGRWK RHH KARKS AGLMKKRTPEIRRT PPLQKKAR+LGRLIPGCR+V FPKLLEEAGDYISALEMQVRAMTALADLLAGGP+PPA
Sbjct:    1 MASFLPNLHSVTSSQQSNHKKRRKLAHHASLA--PAPWTSQTEHRIYATNLLHALRRNSPAAASDVRAAADRALAATAKSRTRWSRAILANPFGRWKRRHHKKARKSGAGLMKKRTPEIRRTVPPLQKKARALGRLIPGCRKVPFPKLLEEAGDYISALEMQVRAMTALADLLAGGPTPPA 179
[Close]
BLAST of Vigst.04G256200.01 vs. ExPASy TrEMBL (2024)
Match: tr|V7D1B4|V7D1B4_PHAVU (BHLH domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G224600g PE=4 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 8.482e-95
Identity = 159/181 (87.85%), Postives = 165/181 (91.16%), Query Frame = 0 
Query:    1 MASFHSNLHSVTSSQQSNHKKRRKLAHHASLASAPSPWTSQTEHRIYATNLLHALRRNSPSAASDVRAAADRALAATAKGRTRWSRAILANPFGRWKGRHHMKARKSRAGLMKKRTPEIRRTAPPLQKKARSLGRLIPGCRRVSFPKLLEEAGDYISALEMQVRAMTALADLLAGGPSPPA 181
            MASFHSNLHS TSSQ SNHKKRRKL HHASLA    PWTSQTEHRIYA NLLHALRR SP+AA DVRAAADRALAATAKGRT WSRAILANPFGRWK RHH KARKS +GL+KKRTPEIRRT PPLQKKAR LGRLIPGCR++SFPKLLEEAGDYISALEMQVRAMTALADLLAGGP+PPA
Sbjct:    1 MASFHSNLHSATSSQHSNHKKRRKLTHHASLA----PWTSQTEHRIYAFNLLHALRRKSPAAARDVRAAADRALAATAKGRTHWSRAILANPFGRWKQRHHRKARKSGSGLVKKRTPEIRRTVPPLQKKARVLGRLIPGCRKLSFPKLLEEAGDYISALEMQVRAMTALADLLAGGPTPPA 177
[Close]
BLAST of Vigst.04G256200.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445LFX2|A0A445LFX2_GLYSO (Transcription factor bHLH149 OS=Glycine soja OX=3848 GN=D0Y65_007993 PE=4 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 2.210e-80
Identity = 133/184 (72.28%), Postives = 146/184 (79.35%), Query Frame = 0 
Query:    3 SFHSNLHSVTSSQQSN-HKKRRKLAHHASLASAPSPWTSQTEHRIYATNLLHALRRNS-PSAASDVRAAADRALAATAKGRTRWSRAILANPFGRWKG---RHHMKARKSRAG-LMKKRTPEIRRTAPPLQKKARSLGRLIPGCRRVSFPKLLEEAGDYISALEMQVRAMTALADLLAGGPSPP 180
            S HSNLHS+T  Q SN +KKRRK+ H  S  SA +PWTS TEHR+Y++NLLHALRRNS P+AA  VRAAADR LAATAKGRTRWSRAILANPFGRW+    RHH K +   A   MKK TPEIRR  P +QKKAR LG+LIPGCR+VSFPKLLEEAGDYISALEMQVRAM ALADLL  G  PP
Sbjct:    7 SLHSNLHSLTLLQHSNQNKKRRKITHQNS--SALTPWTSHTEHRLYSSNLLHALRRNSNPTAALQVRAAADRVLAATAKGRTRWSRAILANPFGRWRKQRQRHHKKVKNCSANKCMKKTTPEIRRRLPAVQKKARVLGKLIPGCRKVSFPKLLEEAGDYISALEMQVRAMKALADLLPTGAPPP 188
[Close]
BLAST of Vigst.04G256200.01 vs. ExPASy TrEMBL (2024)
Match: tr|I1JR46|I1JR46_SOYBN (BHLH domain-containing protein OS=Glycine max OX=3847 GN=100813766 PE=4 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.661e-77
Identity = 129/184 (70.11%), Postives = 145/184 (78.80%), Query Frame = 0 
Query:    3 SFHSNLHSVTSSQQSN-HKKRRKLAHHASLASAPSPWTSQTEHRIYATNLLHALRRNS-PSAASDVRAAADRALAATAKGRTRWSRAILANPFGRWKG---RHHMKARKSRAG-LMKKRTPEIRRTAPPLQKKARSLGRLIPGCRRVSFPKLLEEAGDYISALEMQVRAMTALADLLAGGPSPP 180
            S HSNLHS+T  Q SN +KKRRK+ H  SLA   +PWTS T+HR+Y++NLL ALRRNS P+A+  VRAAADR LAATAKGRTRWSRAILANPFGRW+    RHH K +   A   MKK TP+IRR  P +QKKAR LG+LIPGCR+VSFPKLLEEAGDYISALEMQVRAM ALADLL  G  PP
Sbjct:    7 SLHSNLHSLTLLQHSNQNKKRRKITHQNSLAL--TPWTSHTQHRLYSSNLLLALRRNSNPTASLQVRAAADRVLAATAKGRTRWSRAILANPFGRWRKQRQRHHKKVKNCSANKCMKKTTPDIRRRLPAVQKKARVLGKLIPGCRKVSFPKLLEEAGDYISALEMQVRAMKALADLLPTGAPPP 188
[Close]
BLAST of Vigst.04G256200.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445FKD1|A0A445FKD1_GLYSO (Transcription factor bHLH149 OS=Glycine soja OX=3848 GN=D0Y65_052313 PE=4 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 5.154e-77
Identity = 125/181 (69.06%), Postives = 141/181 (77.90%), Query Frame = 0 
Query:    3 SFHSNLHSVTSSQQSNHKKRRKLAHHASLASAPSPWTSQTEHRIYATNLLHALRRNS-PSAASDVRAAADRALAATAKGRTRWSRAILANPFGRWKGRHHMKARKSRAG-LMKKRTPEIRRTAPPLQKKARSLGRLIPGCRRVSFPKLLEEAGDYISALEMQVRAMTALADLLAGGPSPPA 181
            S HSNLHSV +       KRR++ H  S A  PS WTS TE R+Y++ LLH+LRRNS P+AA +VRA+ADR LAATAKGRTRWSRAIL+NP  RWK RHH K +K  A   MKK TPEIRR+ P +QKKAR LG+LIPGCR+VSFPKLLEEAGDYISALEMQVRAM ALADLLA G  PPA
Sbjct:    5 SLHSNLHSVNN-------KRRQITHQNSFALTPS-WTSLTEQRLYSSKLLHSLRRNSNPTAALEVRASADRVLAATAKGRTRWSRAILSNPICRWKQRHHKKVKKYSANKFMKKTTPEIRRSLPAVQKKARVLGKLIPGCRKVSFPKLLEEAGDYISALEMQVRAMKALADLLATGAPPPA 177
[Close]
BLAST of Vigst.04G256200.01 vs. ExPASy TrEMBL (2024)
Match: tr|I1NBQ9|I1NBQ9_SOYBN (BHLH domain-containing protein OS=Glycine max OX=3847 GN=100802046 PE=4 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 5.154e-77
Identity = 125/181 (69.06%), Postives = 141/181 (77.90%), Query Frame = 0 
Query:    3 SFHSNLHSVTSSQQSNHKKRRKLAHHASLASAPSPWTSQTEHRIYATNLLHALRRNS-PSAASDVRAAADRALAATAKGRTRWSRAILANPFGRWKGRHHMKARKSRAG-LMKKRTPEIRRTAPPLQKKARSLGRLIPGCRRVSFPKLLEEAGDYISALEMQVRAMTALADLLAGGPSPPA 181
            S HSNLHSV +       KRR++ H  S A  PS WTS TE R+Y++ LLH+LRRNS P+AA +VRA+ADR LAATAKGRTRWSRAIL+NP  RWK RHH K +K  A   MKK TPEIRR+ P +QKKAR LG+LIPGCR+VSFPKLLEEAGDYISALEMQVRAM ALADLLA G  PPA
Sbjct:    5 SLHSNLHSVNN-------KRRQITHQNSFALTPS-WTSLTEQRLYSSKLLHSLRRNSNPTAALEVRASADRVLAATAKGRTRWSRAILSNPICRWKQRHHKKVKKYSANKFMKKTTPEIRRSLPAVQKKARVLGKLIPGCRKVSFPKLLEEAGDYISALEMQVRAMKALADLLATGAPPPA 177
[Close]
BLAST of Vigst.04G256200.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|O80482|BH149_ARATH (Transcription factor bHLH149 OS=Arabidopsis thaliana OX=3702 GN=BHLH149 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.520e-27
Identity = 67/149 (44.97%), Postives = 87/149 (58.39%), Query Frame = 0 
Query:   38 WTSQTEHRIYATNLLHALRR---------NSPS------AASDVRAAADRALAATAKGRTRWSRAILANPFGRWKGRHHMKAR-----KSRAGLMKKRTPEIRRTAPPLQKKARSLGRLIPGCRRVSFPKLLEEAGDYISALEMQVRAM 166
            W +    +IYA  L+ ALRR         N+ +      AA ++R  ADR LAA+A+G TRWSRAILA+       +H    +     KSR GL    T   R   P +++K + LGRL+PGCR+VS P LL+EA DYI+ALEMQVRAM
Sbjct:   44 WKTNRVQQIYACKLVEALRRVRQRSSTTSNNETDKLVSGAAREIRDTADRVLAASARGTTRWSRAILASRVRAKLKKHRKAKKSTGNCKSRKGL----TETNRIKLPAVERKLKILGRLVPGCRKVSVPNLLDEATDYIAALEMQVRAM 188
[Close]
BLAST of Vigst.04G256200.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9C8Z9|BH148_ARATH (Transcription factor bHLH148 OS=Arabidopsis thaliana OX=3702 GN=BHLH148 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.847e-27
Identity = 73/179 (40.78%), Postives = 93/179 (51.96%), Query Frame = 0 
Query:   38 WTSQTEHRIYATNLLHAL---RRNSPSAASD----------VRAAADRALAATAKGRTRWSRAILANPFGRWKGRHHMKARKSRAGLMKKRTPEI----------------------RRTAPPLQKKARSLGRLIPGCRRVSFPKLLEEAGDYISALEMQVRAMTALADLLAG-GPSPP 180
            W S+ + RIY+  L  AL   R NS ++ S           VR AADRALA +A+GRT WSRAILAN       R  +K RK R        P +                      +++ P + +K R LGRL+PGC + S P +LEEA DYI ALEMQVRAM +L  LL+  G +PP
Sbjct:   48 WRSEKQQRIYSAKLFQALQQVRLNSSASTSSSPTAQKRGKAVREAADRALAVSARGRTLWSRAILAN-------RIKLKFRKQRRPRATMAIPAMTTVVSSSSNRSRKRRVSVLRLNKKSIPDVNRKVRVLGRLVPGCGKQSVPVILEEATDYIQALEMQVRAMNSLVQLLSSYGSAPP 219
[Close]
BLAST of Vigst.04G256200.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9M9L6|BH150_ARATH (Transcription factor bHLH150 OS=Arabidopsis thaliana OX=3702 GN=BHLH150 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.158e-27
Identity = 63/139 (45.32%), Postives = 85/139 (61.15%), Query Frame = 0 
Query:   38 WTSQTEHRIYATNLLHALRRNSPSAASDVRAAADRALAATAKGRTRWSRAILANPFGR-WKGRHHMK-ARKSRAGLMKKRTPEIRRTAPPLQKKARSLGRLIPGCRRVSFPKLLEEAGDYISALEMQVRAMTALADLLA 174
            W + T  ++Y+  L  AL+R+  SA   VR  AD+ LA TA+G TRWSRAIL + FG   + R + K A    A +        RR    +  + R LG L+PGCRR + P+LL+E  DYI+ALEMQVRAMTAL+ +L+
Sbjct:   63 WRATTAQKVYSLKLYDALQRSRRSAT--VRDTADKVLATTARGATRWSRAILVSRFGTSLRRRRNTKPASALAAAIRGSGGSGRRRKLSAVGNRVRVLGGLVPGCRRTALPELLDETADYIAALEMQVRAMTALSKILS 199
[Close]
BLAST of Vigst.04G256200.01 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9LSN7|BH147_ARATH (Transcription factor bHLH147 OS=Arabidopsis thaliana OX=3702 GN=BHLH147 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 5.443e-26
Identity = 59/161 (36.65%), Postives = 87/161 (54.04%), Query Frame = 0 
Query:   38 WTSQTEHRIYATNLLHALRR-------------NSPSAASDVRAAADRALAATAKGRTRWSRAILA----------------NPFGRWKGRHHMKARKSRAGLMKKRTPEIRRTAPPLQKKARSLGRLIPGCRRVSFPKLLEEAGDYISALEMQVRAMTAL 169
            W S+ + +IY+T L+HALR              + P     VR  ADRALA  A+G+T WSRAIL+                NP         ++++K RA +++ +   +    P +Q+K + L RL+PGCR+ S P +LEE  DYI+A+EMQ+R MTA+
Sbjct:   50 WRSEKQQQIYSTKLVHALRELRISQQPSSSSSSSIPRGGRAVREVADRALAVAARGKTLWSRAILSKAVKLKFRKHKRQRISNPTTTTLTTGSIRSKKQRATVLRLKAKGL----PAVQRKVKVLSRLVPGCRKQSLPVVLEETTDYIAAMEMQIRTMTAI 206
[Close]
BLAST of Vigst.04G256200.01 vs. Araport11
Match: | (Symbols: AIF4 | ATBS1 Interacting Factor 4 | chr1:2989509-2990132 FORWARD LENGTH=207)

HSP 1 Score: 105.916 bits (263), Expect = 1.574e-28
Identity = 67/149 (44.97%), Postives = 87/149 (58.39%), Query Frame = 0 
Query:   38 WTSQTEHRIYATNLLHALRR---------NSPS------AASDVRAAADRALAATAKGRTRWSRAILANPFGRWKGRHHMKAR-----KSRAGLMKKRTPEIRRTAPPLQKKARSLGRLIPGCRRVSFPKLLEEAGDYISALEMQVRAM 166
            W +    +IYA  L+ ALRR         N+ +      AA ++R  ADR LAA+A+G TRWSRAILA+       +H    +     KSR GL    T   R   P +++K + LGRL+PGCR+VS P LL+EA DYI+ALEMQVRAM
Sbjct:   44 WKTNRVQQIYACKLVEALRRVRQRSSTTSNNETDKLVSGAAREIRDTADRVLAASARGTTRWSRAILASRVRAKLKKHRKAKKSTGNCKSRKGL----TETNRIKLPAVERKLKILGRLVPGCRKVSVPNLLDEATDYIAALEMQVRAM 188
[Close]
BLAST of Vigst.04G256200.01 vs. Araport11
Match: | (Symbols: RITF1, AIF2 | ATBS1 Interacting Factor 2, RSA1 interacting transcription factor 1 | chr3:2054647-2055312 REVERSE LENGTH=221)

HSP 1 Score: 105.916 bits (263), Expect = 1.911e-28
Identity = 73/179 (40.78%), Postives = 93/179 (51.96%), Query Frame = 0 
Query:   38 WTSQTEHRIYATNLLHAL---RRNSPSAASD----------VRAAADRALAATAKGRTRWSRAILANPFGRWKGRHHMKARKSRAGLMKKRTPEI----------------------RRTAPPLQKKARSLGRLIPGCRRVSFPKLLEEAGDYISALEMQVRAMTALADLLAG-GPSPP 180
            W S+ + RIY+  L  AL   R NS ++ S           VR AADRALA +A+GRT WSRAILAN       R  +K RK R        P +                      +++ P + +K R LGRL+PGC + S P +LEEA DYI ALEMQVRAM +L  LL+  G +PP
Sbjct:   48 WRSEKQQRIYSAKLFQALQQVRLNSSASTSSSPTAQKRGKAVREAADRALAVSARGRTLWSRAILAN-------RIKLKFRKQRRPRATMAIPAMTTVVSSSSNRSRKRRVSVLRLNKKSIPDVNRKVRVLGRLVPGCGKQSVPVILEEATDYIQALEMQVRAMNSLVQLLSSYGSAPP 219
[Close]
BLAST of Vigst.04G256200.01 vs. Araport11
Match: | (Symbols: RITF1, AIF2 | ATBS1 Interacting Factor 2, RSA1 interacting transcription factor 1 | chr3:2054647-2055312 REVERSE LENGTH=221)

HSP 1 Score: 105.916 bits (263), Expect = 1.911e-28
Identity = 73/179 (40.78%), Postives = 93/179 (51.96%), Query Frame = 0 
Query:   38 WTSQTEHRIYATNLLHAL---RRNSPSAASD----------VRAAADRALAATAKGRTRWSRAILANPFGRWKGRHHMKARKSRAGLMKKRTPEI----------------------RRTAPPLQKKARSLGRLIPGCRRVSFPKLLEEAGDYISALEMQVRAMTALADLLAG-GPSPP 180
            W S+ + RIY+  L  AL   R NS ++ S           VR AADRALA +A+GRT WSRAILAN       R  +K RK R        P +                      +++ P + +K R LGRL+PGC + S P +LEEA DYI ALEMQVRAM +L  LL+  G +PP
Sbjct:   48 WRSEKQQRIYSAKLFQALQQVRLNSSASTSSSPTAQKRGKAVREAADRALAVSARGRTLWSRAILAN-------RIKLKFRKQRRPRATMAIPAMTTVVSSSSNRSRKRRVSVLRLNKKSIPDVNRKVRVLGRLVPGCGKQSVPVILEEATDYIQALEMQVRAMNSLVQLLSSYGSAPP 219
[Close]
BLAST of Vigst.04G256200.01 vs. Araport11
Match: | (Symbols: RITF1, AIF2 | ATBS1 Interacting Factor 2, RSA1 interacting transcription factor 1 | chr3:2054647-2055312 REVERSE LENGTH=221)

HSP 1 Score: 105.916 bits (263), Expect = 1.911e-28
Identity = 73/179 (40.78%), Postives = 93/179 (51.96%), Query Frame = 0 
Query:   38 WTSQTEHRIYATNLLHAL---RRNSPSAASD----------VRAAADRALAATAKGRTRWSRAILANPFGRWKGRHHMKARKSRAGLMKKRTPEI----------------------RRTAPPLQKKARSLGRLIPGCRRVSFPKLLEEAGDYISALEMQVRAMTALADLLAG-GPSPP 180
            W S+ + RIY+  L  AL   R NS ++ S           VR AADRALA +A+GRT WSRAILAN       R  +K RK R        P +                      +++ P + +K R LGRL+PGC + S P +LEEA DYI ALEMQVRAM +L  LL+  G +PP
Sbjct:   48 WRSEKQQRIYSAKLFQALQQVRLNSSASTSSSPTAQKRGKAVREAADRALAVSARGRTLWSRAILAN-------RIKLKFRKQRRPRATMAIPAMTTVVSSSSNRSRKRRVSVLRLNKKSIPDVNRKVRVLGRLVPGCGKQSVPVILEEATDYIQALEMQVRAMNSLVQLLSSYGSAPP 219
[Close]
BLAST of Vigst.04G256200.01 vs. Araport11
Match: | (Symbols: RITF1, AIF2 | ATBS1 Interacting Factor 2, RSA1 interacting transcription factor 1 | chr3:2054647-2055312 REVERSE LENGTH=221)

HSP 1 Score: 105.916 bits (263), Expect = 1.911e-28
Identity = 73/179 (40.78%), Postives = 93/179 (51.96%), Query Frame = 0 
Query:   38 WTSQTEHRIYATNLLHAL---RRNSPSAASD----------VRAAADRALAATAKGRTRWSRAILANPFGRWKGRHHMKARKSRAGLMKKRTPEI----------------------RRTAPPLQKKARSLGRLIPGCRRVSFPKLLEEAGDYISALEMQVRAMTALADLLAG-GPSPP 180
            W S+ + RIY+  L  AL   R NS ++ S           VR AADRALA +A+GRT WSRAILAN       R  +K RK R        P +                      +++ P + +K R LGRL+PGC + S P +LEEA DYI ALEMQVRAM +L  LL+  G +PP
Sbjct:   48 WRSEKQQRIYSAKLFQALQQVRLNSSASTSSSPTAQKRGKAVREAADRALAVSARGRTLWSRAILAN-------RIKLKFRKQRRPRATMAIPAMTTVVSSSSNRSRKRRVSVLRLNKKSIPDVNRKVRVLGRLVPGCGKQSVPVILEEATDYIQALEMQVRAMNSLVQLLSSYGSAPP 219
[Close]
BLAST of Vigst.04G256200.01 vs. Araport11
Match: | (Symbols: AIF1 | AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1 | chr3:1727476-1728111 FORWARD LENGTH=211)

HSP 1 Score: 104.76 bits (260), Expect = 4.304e-28
Identity = 63/139 (45.32%), Postives = 85/139 (61.15%), Query Frame = 0 
Query:   38 WTSQTEHRIYATNLLHALRRNSPSAASDVRAAADRALAATAKGRTRWSRAILANPFGR-WKGRHHMK-ARKSRAGLMKKRTPEIRRTAPPLQKKARSLGRLIPGCRRVSFPKLLEEAGDYISALEMQVRAMTALADLLA 174
            W + T  ++Y+  L  AL+R+  SA   VR  AD+ LA TA+G TRWSRAIL + FG   + R + K A    A +        RR    +  + R LG L+PGCRR + P+LL+E  DYI+ALEMQVRAMTAL+ +L+
Sbjct:   63 WRATTAQKVYSLKLYDALQRSRRSAT--VRDTADKVLATTARGATRWSRAILVSRFGTSLRRRRNTKPASALAAAIRGSGGSGRRRKLSAVGNRVRVLGGLVPGCRRTALPELLDETADYIAALEMQVRAMTALSKILS 199
[Close]
BLAST of Vigst.04G256200.01 vs. Araport11
Match: | (Symbols: AIF3 | ATBS1 Interacting Factor 3 | chr3:5831552-5832244 FORWARD LENGTH=230)

HSP 1 Score: 102.449 bits (254), Expect = 5.624e-27
Identity = 59/161 (36.65%), Postives = 87/161 (54.04%), Query Frame = 0 
Query:   38 WTSQTEHRIYATNLLHALRR-------------NSPSAASDVRAAADRALAATAKGRTRWSRAILA----------------NPFGRWKGRHHMKARKSRAGLMKKRTPEIRRTAPPLQKKARSLGRLIPGCRRVSFPKLLEEAGDYISALEMQVRAMTAL 169
            W S+ + +IY+T L+HALR              + P     VR  ADRALA  A+G+T WSRAIL+                NP         ++++K RA +++ +   +    P +Q+K + L RL+PGCR+ S P +LEE  DYI+A+EMQ+R MTA+
Sbjct:   50 WRSEKQQQIYSTKLVHALRELRISQQPSSSSSSSIPRGGRAVREVADRALAVAARGKTLWSRAILSKAVKLKFRKHKRQRISNPTTTTLTTGSIRSKKQRATVLRLKAKGL----PAVQRKVKVLSRLVPGCRKQSLPVVLEETTDYIAAMEMQIRTMTAI 206
[Close]
BLAST of Vigst.04G256200.01 vs. Araport11
Match: | (Symbols: AIF3 | ATBS1 Interacting Factor 3 | chr3:5831552-5832244 FORWARD LENGTH=230)

HSP 1 Score: 102.449 bits (254), Expect = 5.624e-27
Identity = 59/161 (36.65%), Postives = 87/161 (54.04%), Query Frame = 0 
Query:   38 WTSQTEHRIYATNLLHALRR-------------NSPSAASDVRAAADRALAATAKGRTRWSRAILA----------------NPFGRWKGRHHMKARKSRAGLMKKRTPEIRRTAPPLQKKARSLGRLIPGCRRVSFPKLLEEAGDYISALEMQVRAMTAL 169
            W S+ + +IY+T L+HALR              + P     VR  ADRALA  A+G+T WSRAIL+                NP         ++++K RA +++ +   +    P +Q+K + L RL+PGCR+ S P +LEE  DYI+A+EMQ+R MTA+
Sbjct:   50 WRSEKQQQIYSTKLVHALRELRISQQPSSSSSSSIPRGGRAVREVADRALAVAARGKTLWSRAILSKAVKLKFRKHKRQRISNPTTTTLTTGSIRSKKQRATVLRLKAKGL----PAVQRKVKVLSRLVPGCRKQSLPVVLEETTDYIAAMEMQIRTMTAI 206
[Close]
BLAST of Vigst.04G256200.01 vs. Araport11
Match: | (Symbols: AtIBH1, IBH1 | ILI1 binding bHLH 1 | chr2:17909247-17909717 FORWARD LENGTH=156)

HSP 1 Score: 48.521 bits (114), Expect = 2.341e-7
Identity = 43/148 (29.05%), Postives = 68/148 (45.95%), Query Frame = 0 
Query:   39 TSQTEHRIYATNLLHAL---RRNSPSAASD--------VRAAADRALAATAKGRTR-WSRAILANPFGRWKGRHHMKARKSRAGLMKKRTPEIRRTAPPLQKKARSLGRLIPGCRRVSFPKLLEEAGDYISALEMQVRAMTALADLLA 174
            T   E  ++A + L +L   R+ +P    D        ++ AA  ++A  A G +R WSRA+L               RK +    ++R+ +    AP +++ A  L  L+PG   +   KL+EE   YI  L MQV+ M  L D L+
Sbjct:   10 TDVPEKDVFAFHFLQSLSNLRKQNPFDTPDQKNYRVRKIKKAAYVSMARAAGGSSRLWSRALLRRADKDDNKIVRFSRRKWKISSKRRRSNQ---RAPVVEEAAERLRNLVPGGGGMETSKLMEETAHYIKCLSMQVKVMQCLVDGLS 154
The following BLAST results are available for this feature:
BLAST of Vigst.04G256200.01 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-17 (Blastp of Vigna stipulacea acc. JP252948 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A1S3TPB2|A0A1S3TPB2_VIGRR2.441e-11995.58Transcription factor bHLH149 OS=Vigna radiata var.... [more]
tr|A0A0S3RZV8|A0A0S3RZV8_PHAAN7.329e-11996.13BHLH domain-containing protein OS=Vigna angularis ... [more]
tr|A0A0L9U8V9|A0A0L9U8V9_PHAAN7.329e-11996.13BHLH domain-containing protein OS=Phaseolus angula... [more]
tr|A0AA86RYD3|A0AA86RYD3_9FABA1.779e-10082.87Uncharacterized protein OS=Sphenostylis stenocarpa... [more]
tr|A0A4D6MDA8|A0A4D6MDA8_VIGUN5.382e-9991.71Myc-type OS=Vigna unguiculata OX=3917 GN=DEO72_LG6... [more]
tr|V7D1B4|V7D1B4_PHAVU8.482e-9587.85BHLH domain-containing protein OS=Phaseolus vulgar... [more]
tr|A0A445LFX2|A0A445LFX2_GLYSO2.210e-8072.28Transcription factor bHLH149 OS=Glycine soja OX=38... [more]
tr|I1JR46|I1JR46_SOYBN1.661e-7770.11BHLH domain-containing protein OS=Glycine max OX=3... [more]
tr|A0A445FKD1|A0A445FKD1_GLYSO5.154e-7769.06Transcription factor bHLH149 OS=Glycine soja OX=38... [more]
tr|I1NBQ9|I1NBQ9_SOYBN5.154e-7769.06BHLH domain-containing protein OS=Glycine max OX=3... [more]
back to top
BLAST of Vigst.04G256200.01 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2024-08-17 (Blastp of Vigna stipulacea acc. JP252948 v1.0 proteins vs UniProt Swissprot)
Total hits: 4
Match NameE-valueIdentityDescription
sp|O80482|BH149_ARATH1.520e-2744.97Transcription factor bHLH149 OS=Arabidopsis thalia... [more]
sp|Q9C8Z9|BH148_ARATH1.847e-2740.78Transcription factor bHLH148 OS=Arabidopsis thalia... [more]
sp|Q9M9L6|BH150_ARATH4.158e-2745.32Transcription factor bHLH150 OS=Arabidopsis thalia... [more]
sp|Q9LSN7|BH147_ARATH5.443e-2636.65Transcription factor bHLH147 OS=Arabidopsis thalia... [more]
back to top
BLAST of Vigst.04G256200.01 vs. Araport11
Analysis Date: 2024-08-17 (Blastp of Vigna stipulacea acc. JP252948 v1.0 proteins vs arabidopsis Araport11)
Total hits: 9
Match NameE-valueIdentityDescription
|1.574e-2844.97Symbols: AIF4 | ATBS1 Interacting Factor 4 | chr1:... [more]
|1.911e-2840.78Symbols: RITF1, AIF2 | ATBS1 Interacting Factor 2,... [more]
|1.911e-2840.78Symbols: RITF1, AIF2 | ATBS1 Interacting Factor 2,... [more]
|1.911e-2840.78Symbols: RITF1, AIF2 | ATBS1 Interacting Factor 2,... [more]
|1.911e-2840.78Symbols: RITF1, AIF2 | ATBS1 Interacting Factor 2,... [more]
|4.304e-2845.32Symbols: AIF1 | AtBS1(activation-tagged BRI1 suppr... [more]
|5.624e-2736.65Symbols: AIF3 | ATBS1 Interacting Factor 3 | chr3:... [more]
|5.624e-2736.65Symbols: AIF3 | ATBS1 Interacting Factor 3 | chr3:... [more]
|2.341e-729.05Symbols: AtIBH1, IBH1 | ILI1 binding bHLH 1 | chr2... [more]
back to top
InterPro
Analysis Name: InterProScan Analysis for Vigna stipulacea acc. JP252948 genome v1.0
Date Performed: 2024-08-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR044660Transcription factor IBH1-likePANTHERPTHR33124TRANSCRIPTION FACTOR IBH1-LIKE 1coord: 36..173
IPR044549Transcription factor IBH1-like, bHLH domainCDDcd11444bHLH_AtIBH1_likecoord: 120..170
e-value: 7.27171E-17
score: 69.1884

Sequences
The following sequences are available for this feature:

mRNA sequence

>drVigStip.JP252948.2.0.Vigst.04G256200.01 ID=drVigStip.JP252948.2.0.Vigst.04G256200.01; Name=Vigst.04G256200.01; organism=Vigna stipulacea; type=mRNA; length=552bp
ATGGCGTCTTTCCACTCCAACCTCCATTCTGTTACGTCATCGCAACAATC
CAATCACAAGAAGCGCCGCAAACTCGCGCACCACGCTTCCCTCGCTTCCG
CTCCCTCTCCATGGACTTCCCAAACCGAACACCGCATCTACGCCACCAAT
CTCCTTCACGCGCTCCGCCGTAACAGCCCTTCCGCTGCCAGCGATGTCCG
CGCAGCCGCCGACCGTGCCCTCGCCGCCACGGCCAAAGGCCGAACTCGCT
GGAGCCGCGCGATTCTCGCAAATCCGTTTGGCCGGTGGAAGGGGAGGCAC
CACATGAAGGCCAGGAAGTCCCGCGCTGGATTGATGAAGAAGAGGACGCC
GGAGATTCGTAGAACGGCCCCGCCGCTGCAGAAGAAAGCGCGCTCTCTCG
GACGCTTAATCCCTGGTTGTCGGAGGGTGTCGTTCCCGAAGCTTCTAGAA
GAAGCCGGTGATTATATCTCTGCCTTGGAGATGCAAGTGCGAGCCATGAC
GGCTCTCGCCGACCTTCTCGCCGGCGGCCCCTCGCCCCCCGCTATGAGTT
GA
back to top

protein sequence of drVigStip.JP252948.2.0.Vigst.04G256200.01

>drVigStip.JP252948.2.0.Vigst.04G256200.01 ID=drVigStip.JP252948.2.0.Vigst.04G256200.01; Name=drVigStip.JP252948.2.0.Vigst.04G256200.01; organism=Vigna stipulacea; type=polypeptide; length=184bp
MASFHSNLHSVTSSQQSNHKKRRKLAHHASLASAPSPWTSQTEHRIYATN
LLHALRRNSPSAASDVRAAADRALAATAKGRTRWSRAILANPFGRWKGRH
HMKARKSRAGLMKKRTPEIRRTAPPLQKKARSLGRLIPGCRRVSFPKLLE
EAGDYISALEMQVRAMTALADLLAGGPSPPAMS*
back to top

mRNA from alignment at Chr04:37663286..37664241-

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>drVigStip.JP252948.2.0.Vigst.04G256200.01 ID=drVigStip.JP252948.2.0.Vigst.04G256200.01; Name=Vigst.04G256200.01; organism=Vigna stipulacea; type=mRNA; length=956bp; location=Sequence derived from: Chr04:37663286..37664241- (Vigna stipulacea
GGATCCTCGTGAATTCTCTTTTATTCTCTCTCTCATGCACCCTCCTTAAT
ATCATAATCTTCTTCGCTCATTCTTCATTCAAATATGAATTCCATTTCTT
GCAATTTCTGATCAGTCAATCATCGCTTCCACCTTCTCTATTTTCAAAAA
CAATTCCAATCATATCCCTCTTCTCTCCATCATTCTCTTCTCATGGCGTC
TTTCCACTCCAACCTCCATTCTGTTACGTCATCGCAACAATCCAATCACA
AGAAGCGCCGCAAACTCGCGCACCACGCTTCCCTCGCTTCCGCTCCCTCT
CCATGGACTTCCCAAACCGAACACCGCATCTACGCCACCAATCTCCTTCA
CGCGCTCCGCCGTAACAGCCCTTCCGCTGCCAGCGATGTCCGCGCAGCCG
CCGACCGTGCCCTCGCCGCCACGGCCAAAGGCCGAACTCGCTGGAGCCGC
GCGATTCTCGCAAATCCGTTTGGCCGGTGGAAGGGGAGGCACCACATGAA
GGCCAGGAAGTCCCGCGCTGGATTGATGAAGAAGAGGACGCCGGAGATTC
GTAGAACGGCCCCGCCGCTGCAGAAGAAAGCGCGCTCTCTCGGACGCTTA
ATCCCTGGTTGTCGGAGGGTGTCGTTCCCGAAGCTTCTAGAAGAAGCCGG
TGATTATATCTCTGCCTTGGAGATGCAAGTGCGAGCCATGACGGCTCTCG
CCGACCTTCTCGCCGGCGGCCCCTCGCCCCCCGCTATGAGTTGACTTACT
TTGTTTTTTAGTGTTCCTATTTTTGTTTATTATATATGTTTATATATCGT
TTTTATTGGTTTTCAGCTTTAAATTCCTCTTCTCCAATTTTTTTATCCTC
ATTTTTTTATTATTTCAGTTGAGGAAGTTATAATCGAGAATAATAAGACA
TGTCTTATACTGTTATATAGTATTAGTACTATGATATGGTATATCTTTTG
AAGCCA
back to top

Coding sequence (CDS) from alignment at Chr04:37663286..37664241-

>drVigStip.JP252948.2.0.Vigst.04G256200.01 ID=drVigStip.JP252948.2.0.Vigst.04G256200.01; Name=Vigst.04G256200.01; organism=Vigna stipulacea; type=CDS; length=552bp; location=Sequence derived from: Chr04:37663286..37664241- (Vigna stipulacea
ATGGCGTCTTTCCACTCCAACCTCCATTCTGTTACGTCATCGCAACAATC
CAATCACAAGAAGCGCCGCAAACTCGCGCACCACGCTTCCCTCGCTTCCG
CTCCCTCTCCATGGACTTCCCAAACCGAACACCGCATCTACGCCACCAAT
CTCCTTCACGCGCTCCGCCGTAACAGCCCTTCCGCTGCCAGCGATGTCCG
CGCAGCCGCCGACCGTGCCCTCGCCGCCACGGCCAAAGGCCGAACTCGCT
GGAGCCGCGCGATTCTCGCAAATCCGTTTGGCCGGTGGAAGGGGAGGCAC
CACATGAAGGCCAGGAAGTCCCGCGCTGGATTGATGAAGAAGAGGACGCC
GGAGATTCGTAGAACGGCCCCGCCGCTGCAGAAGAAAGCGCGCTCTCTCG
GACGCTTAATCCCTGGTTGTCGGAGGGTGTCGTTCCCGAAGCTTCTAGAA
GAAGCCGGTGATTATATCTCTGCCTTGGAGATGCAAGTGCGAGCCATGAC
GGCTCTCGCCGACCTTCTCGCCGGCGGCCCCTCGCCCCCCGCTATGAGTT
GA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR044660IBH1-like
IPR044549bHLH_AtIBH1-like
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of DNA-templated transcription