PvulFLAVERTChr09.1409

Transcript Overview
NamePvulFLAVERTChr09.1409
Unique NamedrPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr09.1409
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Sequence length234
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr09chromosomeChr09:34487739..34487972 +Phaseolus vulgaris cv. Flavert genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
carpvfL091Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
pspvfL100Pisum sativum Cameor genome v1aPisum sativum
pspvfL108Pisum sativum Cameor genome v1aPisum sativum
pspvfL404Pisum sativum Cameor genome v1aPisum sativum
pspvfL408Pisum sativum Cameor genome v1aPisum sativum
carpvfL773Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
pvfpvfL101Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfpvfL252Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfL354Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvfvrvR676Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvfvfhR754Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvfvrvR727Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvfvfhR834Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvfvfhR841Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvfvssR837Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvfvuR660Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvpvfL746Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvfvuR706Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvfvssR918Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvfvssR926Vicia sativa cv. Studenica genome v1.0Vicia sativa

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Phvul.009G224400.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
PvulFLAVERTChr09.1409drPhaVulg.Flavert.1.0gene:PvulFLAVERTChr09.1409Phaseolus vulgarisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drPhaVulg.Flavert.1.0exon:PvulFLAVERTChr09.1409.1drPhaVulg.Flavert.1.0exon:PvulFLAVERTChr09.1409.1Phaseolus vulgarisexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drPhaVulg.Flavert.1.0CDS:PvulFLAVERTChr09.1409.1drPhaVulg.Flavert.1.0CDS:PvulFLAVERTChr09.1409.1Phaseolus vulgarisCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr09.1409drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr09.1409Phaseolus vulgarispolypeptide
drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr09.1409drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr09.1409-proteinPhaseolus vulgarispolypeptide


Homology
[Close]
BLAST of PvulFLAVERTChr09.1409 vs. ExPASy TrEMBL (2024)
Match: tr|V7AYG0|V7AYG0_PHAVU (Photosystem II protein D1 (Fragment) OS=Phaseolus vulgaris OX=3885 GN=PHAVU_009G224400g PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 6.842e-37
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0 
Query:    1 MILTLLTATSVFIIAFIVAPPLDIDGIREPDFGSLLYGNNIISGAIIPTSTAIGLHFYPIWEAT 64
            MILTLLTATSVFIIAFIVAPPLDIDGIREPDFGSLLYGNNIISGAIIPTSTAIGLHFYPIWEAT
Sbjct:   21 MILTLLTATSVFIIAFIVAPPLDIDGIREPDFGSLLYGNNIISGAIIPTSTAIGLHFYPIWEAT 84
[Close]
BLAST of PvulFLAVERTChr09.1409 vs. ExPASy TrEMBL (2024)
Match: tr|A0A453GPZ5|A0A453GPZ5_AEGTS (Photosystem II protein D1 OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.583e-32
Identity = 59/77 (76.62%), Postives = 66/77 (85.71%), Query Frame = 0 
Query:    1 MILTLLTATSVFIIAFIVAPPLDIDGIREPDFGSLLYGNNIISGAIIPTSTAIGLHFYPIWEATMLMNDYITTVLMN 77
            MI TLLTATSVFIIA++ APP+DIDGIREP  GSLLYGNNIISGAIIPTS AIGLHFYPIW+  +LM+ Y   VLM+
Sbjct:   36 MIPTLLTATSVFIIAYVAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWKLHLLMSGYTMVVLMS 112
[Close]
BLAST of PvulFLAVERTChr09.1409 vs. ExPASy TrEMBL (2024)
Match: tr|A0A453GPS0|A0A453GPS0_AEGTS (Photosystem II protein D1 OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.595e-32
Identity = 59/77 (76.62%), Postives = 66/77 (85.71%), Query Frame = 0 
Query:    1 MILTLLTATSVFIIAFIVAPPLDIDGIREPDFGSLLYGNNIISGAIIPTSTAIGLHFYPIWEATMLMNDYITTVLMN 77
            MI TLLTATSVFIIA++ APP+DIDGIREP  GSLLYGNNIISGAIIPTS AIGLHFYPIW+  +LM+ Y   VLM+
Sbjct:   37 MIPTLLTATSVFIIAYVAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWKLHLLMSGYTMVVLMS 113
[Close]
BLAST of PvulFLAVERTChr09.1409 vs. ExPASy TrEMBL (2024)
Match: tr|A0A9D3VP45|A0A9D3VP45_9ROSI (Photosystem II protein D1 OS=Gossypium stocksii OX=47602 GN=J1N35_017737 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.555e-32
Identity = 59/64 (92.19%), Postives = 60/64 (93.75%), Query Frame = 0 
Query:    1 MILTLLTATSVFIIAFIVAPPLDIDGIREPDFGSLLYGNNIISGAIIPTSTAIGLHFYPIWEAT 64
            MILTLLTATSVFIIAFIVAPP+DIDGIREP  GSLLYGNNIISGAIIPTS AIGLHFYPIWEA 
Sbjct:    1 MILTLLTATSVFIIAFIVAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAA 64
[Close]
BLAST of PvulFLAVERTChr09.1409 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445CKF9|A0A445CKF9_ARAHY (Photosystem II protein D1 OS=Arachis hypogaea OX=3818 GN=Ahy_A06g026397 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.400e-31
Identity = 57/64 (89.06%), Postives = 58/64 (90.62%), Query Frame = 0 
Query:    1 MILTLLTATSVFIIAFIVAPPLDIDGIREPDFGSLLYGNNIISGAIIPTSTAIGLHFYPIWEAT 64
            MI TLLTATSVFIIAFI APP+DIDGIREP  GSLLYGNNIISGAIIPTS AIGLHFYPIWEA 
Sbjct:    1 MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAA 64
[Close]
BLAST of PvulFLAVERTChr09.1409 vs. ExPASy TrEMBL (2024)
Match: tr|A0A9P9Z6I9|A0A9P9Z6I9_9POAL (Photosystem II protein D1 OS=Rhynchospora breviuscula OX=2022672 GN=LUZ63_021520 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.431e-31
Identity = 60/77 (77.92%), Postives = 63/77 (81.82%), Query Frame = 0 
Query:    1 MILTLLTATSVFIIAFIVAPPLDIDGIREPDFGSLLYGNNIISGAIIPTSTAIGLHFYPIWEATMLMNDYITTVLMN 77
            MI TLLTATSVFIIAFI APP+DIDGIREP  GSLLYGNNIISGAIIPTS AIGLHFYPIWEA  +       VLM+
Sbjct:   37 MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNVVLMS 113
[Close]
BLAST of PvulFLAVERTChr09.1409 vs. ExPASy TrEMBL (2024)
Match: tr|A0A251V753|A0A251V753_HELAN (Photosystem II protein D1/D2 superfamily OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr03g0073601 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 6.932e-31
Identity = 58/64 (90.62%), Postives = 59/64 (92.19%), Query Frame = 0 
Query:    1 MILTLLTATSVFIIAFIVAPPLDIDGIREPDFGSLLYGNNIISGAIIPTSTAIGLHFYPIWEAT 64
            MI TLLTATSVFIIAFI APP+DIDGIREP  GSLLYGNNIISGAIIPTSTAIGLHFYPIWEA 
Sbjct:    1 MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSTAIGLHFYPIWEAA 64
[Close]
BLAST of PvulFLAVERTChr09.1409 vs. ExPASy TrEMBL (2024)
Match: tr|A0A024B398|A0A024B398_KLEFL (D1 reaction center protein of photosystem II (Fragment) OS=Klebsormidium flaccidum OX=3175 GN=psbA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.993e-31
Identity = 58/66 (87.88%), Postives = 59/66 (89.39%), Query Frame = 0 
Query:    1 MILTLLTATSVFIIAFIVAPPLDIDGIREPDFGSLLYGNNIISGAIIPTSTAIGLHFYPIWEATML 66
            MI TLLTATSVFIIAFI APP+DIDGIREP  GSLLYGNNIISGAIIPTS AIGLHFYPIWEA  L
Sbjct:   37 MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASL 102
[Close]
BLAST of PvulFLAVERTChr09.1409 vs. ExPASy TrEMBL (2024)
Match: tr|A0A5K1I282|A0A5K1I282_9MAGN (Photosystem II protein D1 (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS31383 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.014e-30
Identity = 56/64 (87.50%), Postives = 59/64 (92.19%), Query Frame = 0 
Query:    1 MILTLLTATSVFIIAFIVAPPLDIDGIREPDFGSLLYGNNIISGAIIPTSTAIGLHFYPIWEAT 64
            MI TLLTATSVFIIAFI APP+DIDGIREP  GSLLYGNNIISGAI+PTS AIGLHFYPIWEA+
Sbjct:    1 MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIVPTSAAIGLHFYPIWEAS 64
[Close]
BLAST of PvulFLAVERTChr09.1409 vs. ExPASy TrEMBL (2024)
Match: tr|A0A9P9Z837|A0A9P9Z837_9POAL (Photosystem II protein D1 OS=Rhynchospora breviuscula OX=2022672 GN=LUZ63_021330 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.353e-30
Identity = 57/63 (90.48%), Postives = 58/63 (92.06%), Query Frame = 0 
Query:    1 MILTLLTATSVFIIAFIVAPPLDIDGIREPDFGSLLYGNNIISGAIIPTSTAIGLHFYPIWEA 63
            MI TLLTATSVFIIAFI APP+DIDGIREP  GSLLYGNNIISGAIIPTS AIGLHFYPIWEA
Sbjct:   37 MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEA 99
[Close]
BLAST of PvulFLAVERTChr09.1409 vs. ExPASy Swiss-Prot (2024)
Match: sp|P56318|PSBA_CHLVU (Photosystem II protein D1 OS=Chlorella vulgaris OX=3077 GN=psbA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.671e-31
Identity = 58/66 (87.88%), Postives = 59/66 (89.39%), Query Frame = 0 
Query:    1 MILTLLTATSVFIIAFIVAPPLDIDGIREPDFGSLLYGNNIISGAIIPTSTAIGLHFYPIWEATML 66
            MI TLLTATSVFIIAFI APP+DIDGIREP  GSLLYGNNIISGAIIPTS AIGLHFYPIWEA  L
Sbjct:   37 MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSNAIGLHFYPIWEAASL 102
[Close]
BLAST of PvulFLAVERTChr09.1409 vs. ExPASy Swiss-Prot (2024)
Match: sp|A6BM28|PSBA_GNEPA (Photosystem II protein D1 OS=Gnetum parvifolium OX=33153 GN=psbA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.252e-31
Identity = 57/64 (89.06%), Postives = 59/64 (92.19%), Query Frame = 0 
Query:    1 MILTLLTATSVFIIAFIVAPPLDIDGIREPDFGSLLYGNNIISGAIIPTSTAIGLHFYPIWEAT 64
            MI TLLTATSVFIIAFI APP+DIDGIREP  GSLLYGNNIISGAIIPTS AIGLHFYPIWEA+
Sbjct:   37 MIPTLLTATSVFIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAS 100
[Close]
BLAST of PvulFLAVERTChr09.1409 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q1ACM1|PSBA_CHAVU (Photosystem II protein D1 OS=Chara vulgaris OX=55564 GN=psbA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.654e-31
Identity = 57/66 (86.36%), Postives = 59/66 (89.39%), Query Frame = 0 
Query:    1 MILTLLTATSVFIIAFIVAPPLDIDGIREPDFGSLLYGNNIISGAIIPTSTAIGLHFYPIWEATML 66
            MI TLLTATSVFIIAFI APP+DIDGIREP  GSLLYGNNIISGAI+PTS AIGLHFYPIWEA  L
Sbjct:   37 MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIVPTSAAIGLHFYPIWEAASL 102
[Close]
BLAST of PvulFLAVERTChr09.1409 vs. ExPASy Swiss-Prot (2024)
Match: sp|P09752|PSBA_CHLMO (Photosystem II protein D1 OS=Chlamydomonas moewusii OX=3054 GN=psbA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.835e-31
Identity = 57/66 (86.36%), Postives = 59/66 (89.39%), Query Frame = 0 
Query:    1 MILTLLTATSVFIIAFIVAPPLDIDGIREPDFGSLLYGNNIISGAIIPTSTAIGLHFYPIWEATML 66
            MI TLLTATSVFIIAFI APP+DIDGIREP  GSLLYGNNIISGA+IPTS AIGLHFYPIWEA  L
Sbjct:   37 MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAVIPTSNAIGLHFYPIWEAASL 102
[Close]
BLAST of PvulFLAVERTChr09.1409 vs. ExPASy Swiss-Prot (2024)
Match: sp|A6YGB8|PSBA_PLETE (Photosystem II protein D1 OS=Pleurastrum terricola OX=34116 GN=psbA PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 6.713e-31
Identity = 56/66 (84.85%), Postives = 59/66 (89.39%), Query Frame = 0 
Query:    1 MILTLLTATSVFIIAFIVAPPLDIDGIREPDFGSLLYGNNIISGAIIPTSTAIGLHFYPIWEATML 66
            MI TLLTATSVFIIAFI APP+DIDGIREP  GSLLYGNNIISGA++PTS AIGLHFYPIWEA  L
Sbjct:   37 MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAVVPTSNAIGLHFYPIWEAASL 102
[Close]
BLAST of PvulFLAVERTChr09.1409 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q1KVU8|PSBA_TETOB (Photosystem II protein D1 OS=Tetradesmus obliquus OX=3088 GN=psbA PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.762e-31
Identity = 56/66 (84.85%), Postives = 59/66 (89.39%), Query Frame = 0 
Query:    1 MILTLLTATSVFIIAFIVAPPLDIDGIREPDFGSLLYGNNIISGAIIPTSTAIGLHFYPIWEATML 66
            MI TLLTATSVFIIAFI APP+DIDGIREP  GSLLYGNNIISGA++PTS AIGLHFYPIWEA  L
Sbjct:   37 MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAVVPTSNAIGLHFYPIWEAASL 102
[Close]
BLAST of PvulFLAVERTChr09.1409 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q6EW68|PSBA_NYMAL (Photosystem II protein D1 OS=Nymphaea alba OX=34301 GN=psbA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 7.513e-31
Identity = 56/64 (87.50%), Postives = 59/64 (92.19%), Query Frame = 0 
Query:    1 MILTLLTATSVFIIAFIVAPPLDIDGIREPDFGSLLYGNNIISGAIIPTSTAIGLHFYPIWEAT 64
            MI TLLTATSVFIIAFI APP+DIDGIREP  GSLLYGNNIISGAI+PTS AIGLHFYPIWEA+
Sbjct:   37 MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIVPTSAAIGLHFYPIWEAS 100
[Close]
BLAST of PvulFLAVERTChr09.1409 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9T351|PSBA_CONCI (Photosystem II protein D1 OS=Conocephalum conicum OX=41839 GN=psbA PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 7.754e-31
Identity = 57/64 (89.06%), Postives = 58/64 (90.62%), Query Frame = 0 
Query:    1 MILTLLTATSVFIIAFIVAPPLDIDGIREPDFGSLLYGNNIISGAIIPTSTAIGLHFYPIWEAT 64
            MI TLLTATSVFIIAFI APP+DIDGIREP  GSLLYGNNIISGAIIPTS AIGLHFYPIWEA 
Sbjct:   37 MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAA 100
[Close]
BLAST of PvulFLAVERTChr09.1409 vs. ExPASy Swiss-Prot (2024)
Match: sp|A0ZZ15|PSBA_GOSBA (Photosystem II protein D1 OS=Gossypium barbadense OX=3634 GN=psbA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.260e-31
Identity = 57/64 (89.06%), Postives = 58/64 (90.62%), Query Frame = 0 
Query:    1 MILTLLTATSVFIIAFIVAPPLDIDGIREPDFGSLLYGNNIISGAIIPTSTAIGLHFYPIWEAT 64
            MI TLLTATSVFIIAFI APP+DIDGIREP  GSLLYGNNIISGAIIPTS AIGLHFYPIWEA 
Sbjct:   37 MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAA 100
[Close]
BLAST of PvulFLAVERTChr09.1409 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9TNF7|PSBA_DUMHI (Photosystem II protein D1 OS=Dumortiera hirsuta OX=56917 GN=psbA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.347e-31
Identity = 57/64 (89.06%), Postives = 58/64 (90.62%), Query Frame = 0 
Query:    1 MILTLLTATSVFIIAFIVAPPLDIDGIREPDFGSLLYGNNIISGAIIPTSTAIGLHFYPIWEAT 64
            MI TLLTATSVFIIAFI APP+DIDGIREP  GSLLYGNNIISGAIIPTS AIGLHFYPIWEA 
Sbjct:   37 MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAA 100
[Close]
BLAST of PvulFLAVERTChr09.1409 vs. Araport11
Match: | (Symbols: PSBA | photosystem II reaction center protein A | chrc:383-1444 REVERSE LENGTH=353)

HSP 1 Score: 113.235 bits (282), Expect = 9.521e-32
Identity = 57/64 (89.06%), Postives = 58/64 (90.62%), Query Frame = 0 
Query:    1 MILTLLTATSVFIIAFIVAPPLDIDGIREPDFGSLLYGNNIISGAIIPTSTAIGLHFYPIWEAT 64
            MI TLLTATSVFIIAFI APP+DIDGIREP  GSLLYGNNIISGAIIPTS AIGLHFYPIWEA 
Sbjct:   37 MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAA 100
The following BLAST results are available for this feature:
BLAST of PvulFLAVERTChr09.1409 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-19 (Blastp of Phaseolus vulgaris cv. Flavert v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|V7AYG0|V7AYG0_PHAVU6.842e-37100.00Photosystem II protein D1 (Fragment) OS=Phaseolus ... [more]
tr|A0A453GPZ5|A0A453GPZ5_AEGTS1.583e-3276.62Photosystem II protein D1 OS=Aegilops tauschii sub... [more]
tr|A0A453GPS0|A0A453GPS0_AEGTS1.595e-3276.62Photosystem II protein D1 OS=Aegilops tauschii sub... [more]
tr|A0A9D3VP45|A0A9D3VP45_9ROSI3.555e-3292.19Photosystem II protein D1 OS=Gossypium stocksii OX... [more]
tr|A0A445CKF9|A0A445CKF9_ARAHY5.400e-3189.06Photosystem II protein D1 OS=Arachis hypogaea OX=3... [more]
tr|A0A9P9Z6I9|A0A9P9Z6I9_9POAL5.431e-3177.92Photosystem II protein D1 OS=Rhynchospora breviusc... [more]
tr|A0A251V753|A0A251V753_HELAN6.932e-3190.63Photosystem II protein D1/D2 superfamily OS=Helian... [more]
tr|A0A024B398|A0A024B398_KLEFL9.993e-3187.88D1 reaction center protein of photosystem II (Frag... [more]
tr|A0A5K1I282|A0A5K1I282_9MAGN1.014e-3087.50Photosystem II protein D1 (Fragment) OS=Nymphaea c... [more]
tr|A0A9P9Z837|A0A9P9Z837_9POAL1.353e-3090.48Photosystem II protein D1 OS=Rhynchospora breviusc... [more]
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BLAST of PvulFLAVERTChr09.1409 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2024-08-19 (Blastp of Phaseolus vulgaris cv. Flavert v1.0 proteins vs UniProt Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
sp|P56318|PSBA_CHLVU3.671e-3187.88Photosystem II protein D1 OS=Chlorella vulgaris OX... [more]
sp|A6BM28|PSBA_GNEPA5.252e-3189.06Photosystem II protein D1 OS=Gnetum parvifolium OX... [more]
sp|Q1ACM1|PSBA_CHAVU5.654e-3186.36Photosystem II protein D1 OS=Chara vulgaris OX=555... [more]
sp|P09752|PSBA_CHLMO5.835e-3186.36Photosystem II protein D1 OS=Chlamydomonas moewusi... [more]
sp|A6YGB8|PSBA_PLETE6.713e-3184.85Photosystem II protein D1 OS=Pleurastrum terricola... [more]
sp|Q1KVU8|PSBA_TETOB6.762e-3184.85Photosystem II protein D1 OS=Tetradesmus obliquus ... [more]
sp|Q6EW68|PSBA_NYMAL7.513e-3187.50Photosystem II protein D1 OS=Nymphaea alba OX=3430... [more]
sp|Q9T351|PSBA_CONCI7.754e-3189.06Photosystem II protein D1 OS=Conocephalum conicum ... [more]
sp|A0ZZ15|PSBA_GOSBA8.260e-3189.06Photosystem II protein D1 OS=Gossypium barbadense ... [more]
sp|Q9TNF7|PSBA_DUMHI8.347e-3189.06Photosystem II protein D1 OS=Dumortiera hirsuta OX... [more]
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BLAST of PvulFLAVERTChr09.1409 vs. Araport11
Analysis Date: 2024-08-19 (Blastp of Phaseolus vulgaris cv. Flavert v1.0 proteins vs arabidopsis Araport11)
Total hits: 1
Match NameE-valueIdentityDescription
|9.521e-3289.06Symbols: PSBA | photosystem II reaction center pro... [more]
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InterPro
Analysis Name: Blastp of Phaseolus vulgaris cv. Flavert v1.0 proteins vs UniProt TrEMBL
Date Performed: 2024-08-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036854Photosystem II protein D1/D2 superfamilyGENE3D1.20.85.10coord: 1..75
e-value: 1.0E-5
score: 27.3
IPR036854Photosystem II protein D1/D2 superfamilySUPERFAMILY81483Bacterial photosystem II reaction centre, L and M subunitscoord: 1..63
IPR000484Photosynthetic reaction centre, L/MPFAMPF00124Photo_RCcoord: 1..63
e-value: 7.3E-7
score: 40.3
IPR000484Photosynthetic reaction centre, L/MPANTHERPTHR33149PHOTOSYSTEM II PROTEIN D1coord: 1..67

Analysis Name: InterProScan Analysis for Phaseolus vulgaris cv. Flavert genome v1.0
Date Performed: 2024-08-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036854Photosystem II protein D1/D2 superfamilyGENE3D1.20.85.10coord: 1..75
e-value: 1.0E-5
score: 27.3
IPR036854Photosystem II protein D1/D2 superfamilySUPERFAMILY81483Bacterial photosystem II reaction centre, L and M subunitscoord: 1..63
IPR000484Photosynthetic reaction centre, L/MPFAMPF00124Photo_RCcoord: 1..63
e-value: 7.3E-7
score: 40.3
IPR000484Photosynthetic reaction centre, L/MPANTHERPTHR33149PHOTOSYSTEM II PROTEIN D1coord: 1..67

Sequences
The following sequences are available for this feature:

mRNA sequence

>drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr09.1409 ID=drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr09.1409; Name=PvulFLAVERTChr09.1409; organism=Phaseolus vulgaris; type=mRNA; length=234bp
ATGATTCTTACTTTATTGACTGCAACTTCTGTATTTATTATCGCTTTTAT
TGTTGCTCCTCCATTAGATATTGATGGTATTCGTGAACCTGATTTTGGAT
CCTTACTTTATGGAAATAATATCATTTCTGGTGCAATTATTCCTACTTCC
ACGGCTATAGGTTTGCATTTTTATCCTATATGGGAAGCGACTATGTTGAT
GAATGATTATATAACAACGGTCCTTATGAACTAA
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protein sequence of drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr09.1409

>drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr09.1409 ID=drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr09.1409; Name=drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr09.1409; organism=Phaseolus vulgaris; type=polypeptide; length=77bp
MILTLLTATSVFIIAFIVAPPLDIDGIREPDFGSLLYGNNIISGAIIPTS
TAIGLHFYPIWEATMLMNDYITTVLMN
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mRNA from alignment at Chr09:34487739..34487972+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr09.1409 ID=drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr09.1409; Name=PvulFLAVERTChr09.1409; organism=Phaseolus vulgaris; type=mRNA; length=234bp; location=Sequence derived from: Chr09:34487739..34487972+ (Phaseolus vulgaris
ATGATTCTTACTTTATTGACTGCAACTTCTGTATTTATTATCGCTTTTAT
TGTTGCTCCTCCATTAGATATTGATGGTATTCGTGAACCTGATTTTGGAT
CCTTACTTTATGGAAATAATATCATTTCTGGTGCAATTATTCCTACTTCC
ACGGCTATAGGTTTGCATTTTTATCCTATATGGGAAGCGACTATGTTGAT
GAATGATTATATAACAACGGTCCTTATGAACTAA
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Coding sequence (CDS) from alignment at Chr09:34487739..34487972+

>drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr09.1409 ID=drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr09.1409; Name=PvulFLAVERTChr09.1409; organism=Phaseolus vulgaris; type=CDS; length=234bp; location=Sequence derived from: Chr09:34487739..34487972+ (Phaseolus vulgaris
ATGATTCTTACTTTATTGACTGCAACTTCTGTATTTATTATCGCTTTTAT
TGTTGCTCCTCCATTAGATATTGATGGTATTCGTGAACCTGATTTTGGAT
CCTTACTTTATGGAAATAATATCATTTCTGGTGCAATTATTCCTACTTCC
ACGGCTATAGGTTTGCATTTTTATCCTATATGGGAAGCGACTATGTTGAT
GAATGATTATATAACAACGGTCCTTATGAACTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR036854Photo_II_D1/D2_sf
IPR000484Photo_RC_L/M
Vocabulary: Molecular Function
TermDefinition
GO:0045156electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
Vocabulary: Biological Process
TermDefinition
GO:0009772photosynthetic electron transport in photosystem II
GO:0019684photosynthesis, light reaction