PvulFLAVERTChr11.631

Transcript Overview
NamePvulFLAVERTChr11.631
Unique NamedrPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.631
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Sequence length875
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr11chromosomeChr11:12264736..12266581 +Phaseolus vulgaris cv. Flavert genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
anpvfL0116Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
avjpvfL063Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anpvfL0320Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvfL0884Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
avjpvfL664Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anpvfL1117Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvfL1242Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvfL1313Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
carpvfL006Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
carpvfL020Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
ccapvfL092Cajanus cajan cv. Asha genome v2.0Cajanus cajan
pspvfL438Pisum sativum Cameor genome v1aPisum sativum
ccapvfL453Cajanus cajan cv. Asha genome v2.0Cajanus cajan
carpvfL567Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
pspvfL773Pisum sativum Cameor genome v1aPisum sativum
pspvfL784Pisum sativum Cameor genome v1aPisum sativum
pvfpvfR125Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvfhR145Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvfvrvR133Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvfvfhR188Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvfvfhR201Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvfvrvR154Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvfvuR141Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvpvfL121Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvfvuR161Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvpvfL444Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
Psat7g158640.1Pisum sativum Cameor genome v1aPisum sativum
Va08G055800.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-XM_014638014.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-TanjilR_03104Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Cc_v2.0_09659.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vigun11g116100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-TanjilR_07214Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vfaba.Hedin2.R1.6g016520.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
evm.Ca_v2.0_18760Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Phvul.011G104500.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
PvulFLAVERTChr11.631drPhaVulg.Flavert.1.0gene:PvulFLAVERTChr11.631Phaseolus vulgarisgene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drPhaVulg.Flavert.1.0five_prime_UTR:PvulFLAVERTChr11.631.0drPhaVulg.Flavert.1.0five_prime_UTR:PvulFLAVERTChr11.631.0Phaseolus vulgarisfive_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drPhaVulg.Flavert.1.0exon:PvulFLAVERTChr11.631.1drPhaVulg.Flavert.1.0exon:PvulFLAVERTChr11.631.1Phaseolus vulgarisexon
drPhaVulg.Flavert.1.0exon:PvulFLAVERTChr11.631.2drPhaVulg.Flavert.1.0exon:PvulFLAVERTChr11.631.2Phaseolus vulgarisexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drPhaVulg.Flavert.1.0CDS:PvulFLAVERTChr11.631.1drPhaVulg.Flavert.1.0CDS:PvulFLAVERTChr11.631.1Phaseolus vulgarisCDS
drPhaVulg.Flavert.1.0CDS:PvulFLAVERTChr11.631.2drPhaVulg.Flavert.1.0CDS:PvulFLAVERTChr11.631.2Phaseolus vulgarisCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drPhaVulg.Flavert.1.0three_prime_UTR:PvulFLAVERTChr11.631.4drPhaVulg.Flavert.1.0three_prime_UTR:PvulFLAVERTChr11.631.4Phaseolus vulgaristhree_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.631drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.631Phaseolus vulgarispolypeptide
drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.631drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.631-proteinPhaseolus vulgarispolypeptide


Homology
BLAST of PvulFLAVERTChr11.631 vs. ExPASy TrEMBL (2024)
Match: tr|V7AG62|V7AG62_PHAVU (EXPERA domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_011G104500g PE=4 SV=1)

HSP 1 Score: 338.576 bits (867), Expect = 1.936e-117
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0
Query:    1 MGVVLKLVDAILFLFFLLIAVVAPLIDAQTCLPLSYFPEFLVQLKEHYTQDYGDYLLAEKPHFFVGLVWLELLFQWPLALLNLYAILTSKPWFNTTCLMYGVSTSTSMVAILSEMMNSNRASEKLITVYASFMGLGALALLRGLLTCSSKSTSSLGKRPALTRKKRA 167
            MGVVLKLVDAILFLFFLLIAVVAPLIDAQTCLPLSYFPEFLVQLKEHYTQDYGDYLLAEKPHFFVGLVWLELLFQWPLALLNLYAILTSKPWFNTTCLMYGVSTSTSMVAILSEMMNSNRASEKLITVYASFMGLGALALLRGLLTCSSKSTSSLGKRPALTRKKRA
Sbjct:    1 MGVVLKLVDAILFLFFLLIAVVAPLIDAQTCLPLSYFPEFLVQLKEHYTQDYGDYLLAEKPHFFVGLVWLELLFQWPLALLNLYAILTSKPWFNTTCLMYGVSTSTSMVAILSEMMNSNRASEKLITVYASFMGLGALALLRGLLTCSSKSTSSLGKRPALTRKKRA 167          
BLAST of PvulFLAVERTChr11.631 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445KGK0|A0A445KGK0_GLYSO (EXPERA domain-containing protein OS=Glycine soja OX=3848 GN=D0Y65_016247 PE=4 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 1.307e-104
Identity = 147/166 (88.55%), Postives = 159/166 (95.78%), Query Frame = 0
Query:    2 GVVLKLVDAILFLFFLLIAVVAPLIDAQTCLPLSYFPEFLVQLKEHYTQDYGDYLLAEKPHFFVGLVWLELLFQWPLALLNLYAILTSKPWFNTTCLMYGVSTSTSMVAILSEMMNSNRASEKLITVYASFMGLGALALLRGLLTCSSKSTSSLGKRPALTRKKRA 167
            G VLKLVDA+LFLFFLLIAVVAPLIDAQTCLPLSYFP+ LVQLKEHYT+DYGDYL+AEKPHFFVGLVWLELLFQWPLALL+LYAILTSKPWFNTTCL+YGVS +TSMVAILSEMMNS RASEKL+T+YASF+GLG LALLRGLLTCSSKS+S+LGKR AL RKKRA
Sbjct:    3 GCVLKLVDAVLFLFFLLIAVVAPLIDAQTCLPLSYFPDILVQLKEHYTKDYGDYLVAEKPHFFVGLVWLELLFQWPLALLSLYAILTSKPWFNTTCLIYGVSVTTSMVAILSEMMNSKRASEKLLTIYASFLGLGVLALLRGLLTCSSKSSSALGKRSALARKKRA 168          
BLAST of PvulFLAVERTChr11.631 vs. ExPASy TrEMBL (2024)
Match: tr|I1KFB7|I1KFB7_SOYBN (EXPERA domain-containing protein OS=Glycine max OX=3847 GN=100790628 PE=4 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 1.307e-104
Identity = 147/166 (88.55%), Postives = 159/166 (95.78%), Query Frame = 0
Query:    2 GVVLKLVDAILFLFFLLIAVVAPLIDAQTCLPLSYFPEFLVQLKEHYTQDYGDYLLAEKPHFFVGLVWLELLFQWPLALLNLYAILTSKPWFNTTCLMYGVSTSTSMVAILSEMMNSNRASEKLITVYASFMGLGALALLRGLLTCSSKSTSSLGKRPALTRKKRA 167
            G VLKLVDA+LFLFFLLIAVVAPLIDAQTCLPLSYFP+ LVQLKEHYT+DYGDYL+AEKPHFFVGLVWLELLFQWPLALL+LYAILTSKPWFNTTCL+YGVS +TSMVAILSEMMNS RASEKL+T+YASF+GLG LALLRGLLTCSSKS+S+LGKR AL RKKRA
Sbjct:    3 GCVLKLVDAVLFLFFLLIAVVAPLIDAQTCLPLSYFPDILVQLKEHYTKDYGDYLVAEKPHFFVGLVWLELLFQWPLALLSLYAILTSKPWFNTTCLIYGVSVTTSMVAILSEMMNSKRASEKLLTIYASFLGLGVLALLRGLLTCSSKSSSALGKRSALARKKRA 168          
BLAST of PvulFLAVERTChr11.631 vs. ExPASy TrEMBL (2024)
Match: tr|C6TBY7|C6TBY7_SOYBN (EXPERA domain-containing protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 6.924e-104
Identity = 146/166 (87.95%), Postives = 158/166 (95.18%), Query Frame = 0
Query:    2 GVVLKLVDAILFLFFLLIAVVAPLIDAQTCLPLSYFPEFLVQLKEHYTQDYGDYLLAEKPHFFVGLVWLELLFQWPLALLNLYAILTSKPWFNTTCLMYGVSTSTSMVAILSEMMNSNRASEKLITVYASFMGLGALALLRGLLTCSSKSTSSLGKRPALTRKKRA 167
            G VLKLVD +LFLFFLLIAVVAPLIDAQTCLPLSYFP+ LVQLKEHYT+DYGDYL+AEKPHFFVGLVWLELLFQWPLALL+LYAILTSKPWFNTTCL+YGVS +TSMVAILSEMMNS RASEKL+T+YASF+GLG LALLRGLLTCSSKS+S+LGKR AL RKKRA
Sbjct:    3 GCVLKLVDVVLFLFFLLIAVVAPLIDAQTCLPLSYFPDILVQLKEHYTKDYGDYLVAEKPHFFVGLVWLELLFQWPLALLSLYAILTSKPWFNTTCLIYGVSVTTSMVAILSEMMNSKRASEKLLTIYASFLGLGVLALLRGLLTCSSKSSSALGKRSALARKKRA 168          
BLAST of PvulFLAVERTChr11.631 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445HNA7|A0A445HNA7_GLYSO (EXPERA domain-containing protein OS=Glycine soja OX=3848 GN=D0Y65_033883 PE=4 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 2.920e-101
Identity = 143/166 (86.14%), Postives = 156/166 (93.98%), Query Frame = 0
Query:    2 GVVLKLVDAILFLFFLLIAVVAPLIDAQTCLPLSYFPEFLVQLKEHYTQDYGDYLLAEKPHFFVGLVWLELLFQWPLALLNLYAILTSKPWFNTTCLMYGVSTSTSMVAILSEMMNSNRASEKLITVYASFMGLGALALLRGLLTCSSKSTSSLGKRPALTRKKRA 167
            G VLKLVD++LFLFFLLIAVVAPLIDAQTCLPLSYFP+ LVQLKE YT DYGDYL+AEKPHFFVGLVWLELLFQWPLALL+LYA+LTSKPWFNTTCL+YGVS +TSMVAILSEMMNS RASEKL+T+YA F+GLG LALLRGLLTCSSKS+S+LGKR AL RKKRA
Sbjct:    3 GCVLKLVDSVLFLFFLLIAVVAPLIDAQTCLPLSYFPDILVQLKEQYTNDYGDYLVAEKPHFFVGLVWLELLFQWPLALLSLYAMLTSKPWFNTTCLIYGVSVTTSMVAILSEMMNSKRASEKLLTIYAPFLGLGVLALLRGLLTCSSKSSSALGKRSALARKKRA 168          
BLAST of PvulFLAVERTChr11.631 vs. ExPASy TrEMBL (2024)
Match: tr|I1LRR4|I1LRR4_SOYBN (EXPERA domain-containing protein OS=Glycine max OX=3847 GN=GLYMA_12G099900 PE=4 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 2.920e-101
Identity = 143/166 (86.14%), Postives = 156/166 (93.98%), Query Frame = 0
Query:    2 GVVLKLVDAILFLFFLLIAVVAPLIDAQTCLPLSYFPEFLVQLKEHYTQDYGDYLLAEKPHFFVGLVWLELLFQWPLALLNLYAILTSKPWFNTTCLMYGVSTSTSMVAILSEMMNSNRASEKLITVYASFMGLGALALLRGLLTCSSKSTSSLGKRPALTRKKRA 167
            G VLKLVD++LFLFFLLIAVVAPLIDAQTCLPLSYFP+ LVQLKE YT DYGDYL+AEKPHFFVGLVWLELLFQWPLALL+LYA+LTSKPWFNTTCL+YGVS +TSMVAILSEMMNS RASEKL+T+YA F+GLG LALLRGLLTCSSKS+S+LGKR AL RKKRA
Sbjct:    3 GCVLKLVDSVLFLFFLLIAVVAPLIDAQTCLPLSYFPDILVQLKEQYTNDYGDYLVAEKPHFFVGLVWLELLFQWPLALLSLYAMLTSKPWFNTTCLIYGVSVTTSMVAILSEMMNSKRASEKLLTIYAPFLGLGVLALLRGLLTCSSKSSSALGKRSALARKKRA 168          
BLAST of PvulFLAVERTChr11.631 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0S3SBU8|A0A0S3SBU8_PHAAN (EXPERA domain-containing protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.06G149700 PE=4 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.579e-100
Identity = 156/167 (93.41%), Postives = 163/167 (97.60%), Query Frame = 0
Query:    1 MGVVLKLVDAILFLFFLLIAVVAPLIDAQTCLPLSYFPEFLVQLKEHYTQDYGDYLLAEKPHFFVGLVWLELLFQWPLALLNLYAILTSKPWFNTTCLMYGVSTSTSMVAILSEMMNSNRASEKLITVYASFMGLGALALLRGLLTCSSKSTSSLGKRPALTRKKRA 167
            MGVVLKLVDAILFLFFL+IAV APLIDAQTCLPLSYFPE LVQLK+HYT DYGDYL+AEKPHFFVGLVWLELLFQWPLALLNLYAILTSKPWFNTTCLMYGVSTSTSMVAILSEMMNSNRAS+KL+T+YASFMGLGALALLRGLLTCSSKSTS+LGKRPAL RKKRA
Sbjct:    1 MGVVLKLVDAILFLFFLVIAVAAPLIDAQTCLPLSYFPEILVQLKDHYTHDYGDYLVAEKPHFFVGLVWLELLFQWPLALLNLYAILTSKPWFNTTCLMYGVSTSTSMVAILSEMMNSNRASDKLLTLYASFMGLGALALLRGLLTCSSKSTSALGKRPALMRKKRA 167          
BLAST of PvulFLAVERTChr11.631 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0L9V5M3|A0A0L9V5M3_PHAAN (EXPERA domain-containing protein OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0144470 PE=4 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.579e-100
Identity = 156/167 (93.41%), Postives = 163/167 (97.60%), Query Frame = 0
Query:    1 MGVVLKLVDAILFLFFLLIAVVAPLIDAQTCLPLSYFPEFLVQLKEHYTQDYGDYLLAEKPHFFVGLVWLELLFQWPLALLNLYAILTSKPWFNTTCLMYGVSTSTSMVAILSEMMNSNRASEKLITVYASFMGLGALALLRGLLTCSSKSTSSLGKRPALTRKKRA 167
            MGVVLKLVDAILFLFFL+IAV APLIDAQTCLPLSYFPE LVQLK+HYT DYGDYL+AEKPHFFVGLVWLELLFQWPLALLNLYAILTSKPWFNTTCLMYGVSTSTSMVAILSEMMNSNRAS+KL+T+YASFMGLGALALLRGLLTCSSKSTS+LGKRPAL RKKRA
Sbjct:    1 MGVVLKLVDAILFLFFLVIAVAAPLIDAQTCLPLSYFPEILVQLKDHYTHDYGDYLVAEKPHFFVGLVWLELLFQWPLALLNLYAILTSKPWFNTTCLMYGVSTSTSMVAILSEMMNSNRASDKLLTLYASFMGLGALALLRGLLTCSSKSTSALGKRPALMRKKRA 167          
BLAST of PvulFLAVERTChr11.631 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4D6LGZ1|A0A4D6LGZ1_VIGUN (EXPERA domain-containing protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG3g2459 PE=4 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.668e-100
Identity = 156/167 (93.41%), Postives = 163/167 (97.60%), Query Frame = 0
Query:    1 MGVVLKLVDAILFLFFLLIAVVAPLIDAQTCLPLSYFPEFLVQLKEHYTQDYGDYLLAEKPHFFVGLVWLELLFQWPLALLNLYAILTSKPWFNTTCLMYGVSTSTSMVAILSEMMNSNRASEKLITVYASFMGLGALALLRGLLTCSSKSTSSLGKRPALTRKKRA 167
            MGVVLKLVDAILFLFFL+IAV APLIDAQTCLPLSYFPE LVQLKEHYT DYGDYL+AEKPHFFVGLVWLELLFQWPLALLNL+AILTSKPWFNTTCLMYGVSTSTSMVAILSEMMNSNRAS+KL+T+YASFMGLGALALLRGLLTCSSKSTS+LGKRPAL RKKRA
Sbjct:    1 MGVVLKLVDAILFLFFLVIAVAAPLIDAQTCLPLSYFPEILVQLKEHYTHDYGDYLVAEKPHFFVGLVWLELLFQWPLALLNLFAILTSKPWFNTTCLMYGVSTSTSMVAILSEMMNSNRASDKLLTLYASFMGLGALALLRGLLTCSSKSTSALGKRPALMRKKRA 167          
BLAST of PvulFLAVERTChr11.631 vs. ExPASy TrEMBL (2024)
Match: tr|C6T598|C6T598_SOYBN (EXPERA domain-containing protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 6.029e-100
Identity = 142/166 (85.54%), Postives = 155/166 (93.37%), Query Frame = 0
Query:    2 GVVLKLVDAILFLFFLLIAVVAPLIDAQTCLPLSYFPEFLVQLKEHYTQDYGDYLLAEKPHFFVGLVWLELLFQWPLALLNLYAILTSKPWFNTTCLMYGVSTSTSMVAILSEMMNSNRASEKLITVYASFMGLGALALLRGLLTCSSKSTSSLGKRPALTRKKRA 167
            G VLKLVD++LFLFFLLIAVVAPLIDAQTCLPLSYFP+ LVQLKE YT DYGDYL+AEKPHFFVGLVWLELLFQWPLALL+LYA+LTSKPWFNTTCL+YGVS +TSMVAILS MMNS RASEKL+T+YA F+GLG LALLRGLLTCSSKS+S+LGKR AL RKKRA
Sbjct:    3 GCVLKLVDSVLFLFFLLIAVVAPLIDAQTCLPLSYFPDVLVQLKEQYTNDYGDYLVAEKPHFFVGLVWLELLFQWPLALLSLYAMLTSKPWFNTTCLIYGVSVTTSMVAILSGMMNSKRASEKLLTIYAPFLGLGVLALLRGLLTCSSKSSSALGKRSALARKKRA 168          
BLAST of PvulFLAVERTChr11.631 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q6DFQ5|SGMR2_XENTR (Sigma intracellular receptor 2 OS=Xenopus tropicalis OX=8364 GN=tmem97 PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 2.424e-10
Identity = 34/127 (26.77%), Postives = 61/127 (48.03%), Query Frame = 0
Query:    1 MGVVLKLVDAILFLFFLLIAVVAPLIDAQTCLPLSYFPEFLVQLKEHYTQDYGDYLLAEKPHFFVGLVWLELLFQWPLALLNLYAILTSK-PWFNTTCLMYGVSTSTSMVAILSEMMNSNRASEKLI 126
            M V  +L++ I F +F     +  L+D Q  LP S +P+ L+ L + YT  + D+L+A  P +F   V+ E + Q P   +  YA       W     ++Y    +T+++AI+  ++        +I
Sbjct:    1 MAVCARLLEWIFFFYFFSHIPITLLVDLQAVLPPSLYPQELLDLMKWYTVAFKDHLMANPPPWFKSFVYCEAILQLPFFPVAAYAFFKGGCKWIRIPAIVYSAHVATTVIAIIGHILFGEFPKSDVI 127          
BLAST of PvulFLAVERTChr11.631 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q5BJF2|SGMR2_HUMAN (Sigma intracellular receptor 2 OS=Homo sapiens OX=9606 GN=TMEM97 PE=1 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 2.614e-9
Identity = 36/115 (31.30%), Postives = 59/115 (51.30%), Query Frame = 0
Query:    6 KLVDAILFLFFLLIAVVAPLIDAQTCLPLSYFPEFLVQLKEHYTQDYGDYLLAEKPHFFVGLVWLELLFQWPLALLNLYAILT-SKPWFNTTCLMYGVSTSTSMVAILSEMMNSN 119
            + V+ +L L+FL    +   +D Q  LP   +P     L + Y +++ D LL E P +F   ++ EL+FQ P   +  YA L  S  W  T  ++Y V T T+++ ILS  +  +
Sbjct:    8 RCVEWLLGLYFLSHIPITLFMDLQAVLPRELYPVEFRNLLKWYAKEFKDPLLQEPPAWFKSFLFCELVFQLPFFPIATYAFLKGSCKWIRTPAIIYSVHTMTTLIPILSTFLFED 122          
BLAST of PvulFLAVERTChr11.631 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q4R8A8|SGMR2_MACFA (Sigma intracellular receptor 2 OS=Macaca fascicularis OX=9541 GN=Tmem97 PE=2 SV=2)

HSP 1 Score: 56.225 bits (134), Expect = 3.592e-9
Identity = 38/122 (31.15%), Postives = 62/122 (50.82%), Query Frame = 0
Query:    1 MGV--VLKLVDAILFLFFLLIAVVAPLIDAQTCLPLSYFPEFLVQLKEHYTQDYGDYLLAEKPHFFVGLVWLELLFQWPLALLNLYAILT-SKPWFNTTCLMYGVSTSTSMVAILSEMMNSN 119
            MGV    + V+ +L ++FL    +   +D Q  LP   +P     L + Y +++ D LL E P +F   ++ EL+FQ P   +  YA L  S  W  T  ++Y V T T+++ ILS  +  +
Sbjct:    1 MGVPATRRCVEWLLGIYFLSHIPITLFMDLQAVLPRELYPVEFRNLLKWYAKEFKDPLLQEPPAWFKSFLFCELVFQLPFFPIATYAFLKGSCKWIRTPAIIYSVHTMTTLIPILSTFLFED 122          
BLAST of PvulFLAVERTChr11.631 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q3MHW7|SGMR2_BOVIN (Sigma intracellular receptor 2 OS=Bos taurus OX=9913 GN=TMEM97 PE=1 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 3.621e-8
Identity = 33/110 (30.00%), Postives = 56/110 (50.91%), Query Frame = 0
Query:    8 VDAILFLFFLLIAVVAPLIDAQTCLPLSYFPEFLVQLKEHYTQDYGDYLLAEKPHFFVGLVWLELLFQWPLALLNLYAILTSK-PWFNTTCLMYGVSTSTSMVAILSEMM 116
            ++  L  +FL    +  L+D Q  LP   +P  L  L++ Y +++ D LL   P +F   ++ EL+FQ P   +  YA       W  T  ++Y V T T+++ ILS ++
Sbjct:   10 LEWFLGFYFLSHIPITLLMDLQGVLPRDLYPVELRNLQQWYIEEFKDPLLQTPPAWFKSFLFCELVFQLPFFPIAAYAFFKGGCKWIRTPAIIYSVHTMTTLIPILSTLL 119          
BLAST of PvulFLAVERTChr11.631 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q5U3Y7|SGMR2_RAT (Sigma intracellular receptor 2 OS=Rattus norvegicus OX=10116 GN=Tmem97 PE=2 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 6.946e-8
Identity = 35/122 (28.69%), Postives = 61/122 (50.00%), Query Frame = 0
Query:    1 MGVVL--KLVDAILFLFFLLIAVVAPLIDAQTCLPLSYFPEFLVQLKEHYTQDYGDYLLAEKPHFFVGLVWLELLFQWPLALLNLYAILT-SKPWFNTTCLMYGVSTSTSMVAILSEMMNSN 119
            MG V   + V+ +L L+F+    +   ID Q  LP   +P+    L   Y++++ D L+ E P +F   ++ EL+FQ P   +  YA    S  W     ++Y V T T+++ IL  ++  +
Sbjct:    1 MGAVTARRCVEWLLGLYFVSHIPITMFIDLQALLPPELYPQEFSNLLRWYSKEFKDPLMQEPPVWFKSFLFCELVFQLPFFPIAAYAFFKGSCRWIRIPAIIYAVHTITTLIPILYTILFED 122          
BLAST of PvulFLAVERTChr11.631 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q8VD00|SGMR2_MOUSE (Sigma intracellular receptor 2 OS=Mus musculus OX=10090 GN=Tmem97 PE=1 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 9.751e-7
Identity = 31/115 (26.96%), Postives = 56/115 (48.70%), Query Frame = 0
Query:    6 KLVDAILFLFFLLIAVVAPLIDAQTCLPLSYFPEFLVQLKEHYTQDYGDYLLAEKPHFFVGLVWLELLFQWPLALLNLYAILT-SKPWFNTTCLMYGVSTSTSMVAILSEMMNSN 119
            + V+ +L L+F+    +   ID Q  LP   +P+    L   Y++++ D L+ E P +F   +  EL+FQ P   +  YA    S  W     ++Y   T T+++ IL  ++  +
Sbjct:    8 RCVEWLLGLYFVSHIPITLFIDLQAVLPPELYPQEFSNLLRWYSKEFKDPLMQEPPVWFKSFLLCELVFQLPFFPIAAYAFFKGSCRWIRIPAIIYAAHTITTLIPILYTLLFED 122          
BLAST of PvulFLAVERTChr11.631 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr2:13746792-13747730 REVERSE LENGTH=168)

HSP 1 Score: 211.846 bits (538), Expect = 6.117e-71
Identity = 101/168 (60.12%), Postives = 126/168 (75.00%), Query Frame = 0
Query:    1 MGVVLKLVDAILFLFFLLIAVVAPLIDAQTCLPLSYFPEFLVQLKEHYTQDYGDYLLAEKPHFFVGLVWLELLFQWPLALLNLYAILTSKPWFNTTCLMYGVSTSTSMVAILSEMMNSNRASEKLITVYASFMGLGALALLRGLLTCSSKSTSSLGKRPA-LTRKKRA 167
            MG   KL+DA+LFL+F L+AV+APLID QT LP   FP F+V L   Y  ++GDYL+ EKPHF VGLVW ELL  WPL+++N+YAIL  K WF TT ++YG S  TSM AIL EM+ S +ASEKL+ +Y  FMG+G LALLRGLL+ S+KS  ++GKRPA L R+KRA
Sbjct:    1 MGAFCKLIDAVLFLYFALMAVIAPLIDGQTSLPGDIFPAFIVDLNRWYIDEFGDYLVKEKPHFLVGLVWHELLLLWPLSIVNVYAILAGKSWFGTTSMVYGASVVTSMAAILGEMIGSGKASEKLLMMYVPFMGVGILALLRGLLSQSNKSGGAVGKRPAILARRKRA 168          
BLAST of PvulFLAVERTChr11.631 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:1510469-1511485 FORWARD LENGTH=168)

HSP 1 Score: 198.364 bits (503), Expect = 1.483e-65
Identity = 91/166 (54.82%), Postives = 120/166 (72.29%), Query Frame = 0
Query:    1 MGVVLKLVDAILFLFFLLIAVVAPLIDAQTCLPLSYFPEFLVQLKEHYTQDYGDYLLAEKPHFFVGLVWLELLFQWPLALLNLYAILTSKPWFNTTCLMYGVSTSTSMVAILSEMMNSNRASEKLITVYASFMGLGALALLRGLLTCSSKSTSSLGKRPALTRKKR 166
            MG + KL+D  LF++F+ +A++APLID QT LP   +P FL  LK  Y  D+GDYLL EKPHF VGLVW ELLF WPL++ N+YAIL  K WF TTCL+YG S  TSM AIL +M+ S +AS++L+ +Y  FMG G LA+LRGL+  S+K+T S GKR  +  +++
Sbjct:    1 MGALGKLIDVALFVYFVSMAIIAPLIDGQTSLPSGIYPAFLTDLKSKYIADFGDYLLMEKPHFLVGLVWHELLFLWPLSIANVYAILAGKSWFGTTCLLYGASLVTSMAAILGDMIGSGKASDRLLMMYVPFMGFGILAVLRGLVYRSTKNTGSSGKRSTIMPRRK 166          
BLAST of PvulFLAVERTChr11.631 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:1511943-1512656 FORWARD LENGTH=160)

HSP 1 Score: 161.384 bits (407), Expect = 4.292e-51
Identity = 78/158 (49.37%), Postives = 110/158 (69.62%), Query Frame = 0
Query:    1 MGVVLKLVDAILFLFFLLIAVVAPLIDAQTCLPLSYFPEFLVQLKEHYTQDYGDYLLAEKPHFFVGLVWLELLFQWPLALLNLYAILTSKPWFNTTCLMYGVSTSTSMVAILSEMMNSNRASEKLITVYASFMGLGALALLRGLLTCSSKSTSSLGKR 158
            MG + KL++  LF FF L+A+  PL++ Q   P   +P+ L  LK+ Y+ ++ DYL  EKP FFVGLVW E++F  PL+++N+YAILTSK WF TT L+YG S  TSM AIL +M+ S + + KL+  Y  F+GL  LA+LRGL+TCS+K ++ L +R
Sbjct:    1 MGALGKLINISLFFFFALMAINVPLLNGQILFP-GIYPKLLTDLKDWYSSEFNDYLFIEKPLFFVGLVWHEIIFLLPLSIVNIYAILTSKSWFGTTSLLYGASFLTSMAAILGDMIGSEKVTNKLLLAYLPFVGLAILAMLRGLVTCSTKRSTVLARR 157          
The following BLAST results are available for this feature:
BLAST of PvulFLAVERTChr11.631 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-19 (Blastp of Phaseolus vulgaris cv. Flavert v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|V7AG62|V7AG62_PHAVU1.936e-117100.00EXPERA domain-containing protein OS=Phaseolus vulg... [more]
tr|A0A445KGK0|A0A445KGK0_GLYSO1.307e-10488.55EXPERA domain-containing protein OS=Glycine soja O... [more]
tr|I1KFB7|I1KFB7_SOYBN1.307e-10488.55EXPERA domain-containing protein OS=Glycine max OX... [more]
tr|C6TBY7|C6TBY7_SOYBN6.924e-10487.95EXPERA domain-containing protein OS=Glycine max OX... [more]
tr|A0A445HNA7|A0A445HNA7_GLYSO2.920e-10186.14EXPERA domain-containing protein OS=Glycine soja O... [more]
tr|I1LRR4|I1LRR4_SOYBN2.920e-10186.14EXPERA domain-containing protein OS=Glycine max OX... [more]
tr|A0A0S3SBU8|A0A0S3SBU8_PHAAN1.579e-10093.41EXPERA domain-containing protein OS=Vigna angulari... [more]
tr|A0A0L9V5M3|A0A0L9V5M3_PHAAN1.579e-10093.41EXPERA domain-containing protein OS=Phaseolus angu... [more]
tr|A0A4D6LGZ1|A0A4D6LGZ1_VIGUN1.668e-10093.41EXPERA domain-containing protein OS=Vigna unguicul... [more]
tr|C6T598|C6T598_SOYBN6.029e-10085.54EXPERA domain-containing protein OS=Glycine max OX... [more]
back to top
BLAST of PvulFLAVERTChr11.631 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2024-08-19 (Blastp of Phaseolus vulgaris cv. Flavert v1.0 proteins vs UniProt Swissprot)
Total hits: 6
Match NameE-valueIdentityDescription
sp|Q6DFQ5|SGMR2_XENTR2.424e-1026.77Sigma intracellular receptor 2 OS=Xenopus tropical... [more]
sp|Q5BJF2|SGMR2_HUMAN2.614e-931.30Sigma intracellular receptor 2 OS=Homo sapiens OX=... [more]
sp|Q4R8A8|SGMR2_MACFA3.592e-931.15Sigma intracellular receptor 2 OS=Macaca fascicula... [more]
sp|Q3MHW7|SGMR2_BOVIN3.621e-830.00Sigma intracellular receptor 2 OS=Bos taurus OX=99... [more]
sp|Q5U3Y7|SGMR2_RAT6.946e-828.69Sigma intracellular receptor 2 OS=Rattus norvegicu... [more]
sp|Q8VD00|SGMR2_MOUSE9.751e-726.96Sigma intracellular receptor 2 OS=Mus musculus OX=... [more]
back to top
BLAST of PvulFLAVERTChr11.631 vs. Araport11
Analysis Date: 2024-08-19 (Blastp of Phaseolus vulgaris cv. Flavert v1.0 proteins vs arabidopsis Araport11)
Total hits: 3
Match NameE-valueIdentityDescription
|6.117e-7160.12Symbols: no symbol available | no full name availa... [more]
|1.483e-6554.82Symbols: no symbol available | no full name availa... [more]
|4.292e-5149.37Symbols: no symbol available | no full name availa... [more]
back to top
InterPro
Analysis Name: Blastp of Phaseolus vulgaris cv. Flavert v1.0 proteins vs UniProt TrEMBL
Date Performed: 2024-08-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016964Sigma intracellular receptor 2PIRSFPIRSF031032TMP_97coord: 1..158
e-value: 2.5E-36
score: 118.1
IPR033118EXPERA domainPFAMPF05241EBPcoord: 40..120
e-value: 2.1E-12
score: 58.7
IPR033118EXPERA domainPROSITEPS51751EXPERAcoord: 8..140
score: 15.933109
IPR051987Sigma-2 receptor-likePANTHERPTHR31204SIGMA INTRACELLULAR RECEPTOR 2coord: 1..165

Analysis Name: InterProScan Analysis for Phaseolus vulgaris cv. Flavert genome v1.0
Date Performed: 2024-08-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016964Sigma intracellular receptor 2PIRSFPIRSF031032TMP_97coord: 1..158
e-value: 2.5E-36
score: 118.1
IPR033118EXPERA domainPFAMPF05241EBPcoord: 40..120
e-value: 2.1E-12
score: 58.7
IPR033118EXPERA domainPROSITEPS51751EXPERAcoord: 8..140
score: 15.933109
IPR051987Sigma-2 receptor-likePANTHERPTHR31204SIGMA INTRACELLULAR RECEPTOR 2coord: 1..165

Sequences
The following sequences are available for this feature:

mRNA sequence

>drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.631 ID=drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.631; Name=PvulFLAVERTChr11.631; organism=Phaseolus vulgaris; type=mRNA; length=875bp
GAATAGAACCCTAAGGAACGAAAGTACTGGGAAATTTGCAGGCTCCAAGA
TCCCTCTTTTCCTAAGAACCCATTTCTCTTTCATCCTCCAATCTTCATAC
TGTGCCCAGAGAGGCTTCAAATTCGCGAATCAACAAATGGGTGTTGTGTT
GAAGCTAGTAGACGCCATTCTGTTTCTGTTCTTCCTCTTGATAGCAGTGG
TGGCTCCTCTCATTGATGCTCAAACGTGTCTTCCTCTCAGTTATTTCCCT
GAATTTCTTGTCCAACTCAAGGAACACTACACCCAAGACTATGGTGATTA
CCTTCTGGCTGAAAAGCCACACTTTTTTGTAGGCCTTGTTTGGCTAGAGC
TTCTATTCCAATGGCCCCTTGCACTCCTCAACCTCTATGCCATTCTCACT
TCCAAGCCTTGGTTCAACACCACTTGCTTGATGTATGGTGTCTCTACCTC
TACCTCCATGGTTGCTATATTATCAGAAATGATGAATTCGAATAGGGCAT
CTGAGAAGCTAATAACAGTGTATGCCTCTTTCATGGGTTTGGGTGCTCTG
GCTCTGCTGCGAGGGTTGCTCACATGTTCATCCAAATCAACTTCATCTCT
AGGCAAAAGACCTGCATTGACGAGGAAAAAGCGAGCTTGAAATTTTCAGG
AATGAATCAAACATAAGAAAATGGAGAAAAGAGCATAACCGTAGGTGCGA
GGGGATGAAGAAGCATGCCAAGGCCCCCTCATGAAACCaattttttgtat
gtttttatttatttaaatctgAGTCCCCTTTGACTTaatatttgagaaaa
agattttGAACATCAAATTCCATCATGTTGCTTTTTTGCTGACATATTTg
ctatgaaaaaaataaaattctatct
back to top

protein sequence of drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.631

>drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.631 ID=drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.631; Name=drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.631; organism=Phaseolus vulgaris; type=polypeptide; length=167bp
MGVVLKLVDAILFLFFLLIAVVAPLIDAQTCLPLSYFPEFLVQLKEHYTQ
DYGDYLLAEKPHFFVGLVWLELLFQWPLALLNLYAILTSKPWFNTTCLMY
GVSTSTSMVAILSEMMNSNRASEKLITVYASFMGLGALALLRGLLTCSSK
STSSLGKRPALTRKKRA
back to top

mRNA from alignment at Chr11:12264736..12266581+

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.631 ID=drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.631; Name=PvulFLAVERTChr11.631; organism=Phaseolus vulgaris; type=mRNA; length=1846bp; location=Sequence derived from: Chr11:12264736..12266581+ (Phaseolus vulgaris
GAATAGAACCCTAAGGAACGAAAGTACTGGGAAATTTGCAGGCTCCAAGA TCCCTCTTTTCCTAAGAACCCATTTCTCTTTCATCCTCCAATCTTCATAC TGTGCCCAGAGAGGCTTCAAATTCGCGAATCAACAAATGGGTGTTGTGTT GAAGCTAGTAGACGCCATTCTGTTTCTGTTCTTCCTCTTGATAGCAGTGG TGGCTCCTCTCATTGATGCTCAAACGTGTCTTCCTCTCAGTTATTTCCCT GAATTTCTTGTCCAACTCAAGGAACACTACACCCAAGACTATGGTGATTA CCTTCTGGCTGAAAAGCCACACTTTTTTGTAGGCCTTGTTTGGCTAGAGC TTCTATTCCAATGGCCCCTTGCACTCCTCAACCTCTATGCCATTCTCACT TCCAAGCCTTGGTTCAACACCACTTGCTTGATGTATGGTGTCTCTACCTC TACCTCCATGGTATCTCTATTATCTTtctcctttctttctctctatcacc ttaaattcatattttacttCTTCTAAGTTTCTCCCATTTTTTATAATCCC ATGAGCAGGATTGCAGAGAATACTTGGTTTTTTTTCCAGGGAAAAAGTTT CTACCTTTTCCATGGCTCccccttttttatttttgtaattttgattAATA GGATTGTATGTTTGTATGGATCCTGAGTTAATATGAACGATTAGGCTTCT GGGGAAGAGAGAAAATGGATATTATTCTCTTTTCTGATGTTTGAATCTTG GGATCTAGAAAAGCTCTAACTTTTTGTAGTTACTAGCAACCATTCAATTA GAACCAATGCATTCATTTGTTTACAGAGATCTGCTAGCTGTTTTTGGGTT CTTCCTCCTCATTTGGTCAGTCTTGGGCCATGGTTCTTTATTCGAAGATT TTCGTGGCTATTATTACTTTGTACTAGTACAAAAAATATAGCTTTTGCAG CTGTCAGATTAGATCATGCTGAATTGATTATATAGCTTGCTGTCTAAATA TAATGAAAGCAAAATTTAGGCCATGCAATTCTAAGGCTTAGATTTAGATT TTGATCGGAAACTATGGTCAAGATGTATTGCATGGCTTTTCTAACAATCG GGTACTTGCTTAGGTGTTAATTACACTACAAAATTACACTATGGTTAGAA TTTGGAGAAAACTTTGATAGTTCTCGAATTAAAATTGTCGTTTGTGGCAG TAATTCACGTAATCCTTTATTGCAAACTTTTTATTACACAAATTATTAAG GTGAAACACTGATTCAGATTGAGGAACAATACAAACAGTACTTAAGAAAT TATATCTGAGTTGTGACTTATCATTTGATCACAAGGACATTTGTTTCACT GAAGTTGGAGGTGTAATATTAGTCTTTGTTCTAGCCACAGATGTAAGTAA CAATGAGACATTGGTTGTTTGTGGGTTGCAGGTTGCTATATTATCAGAAA TGATGAATTCGAATAGGGCATCTGAGAAGCTAATAACAGTGTATGCCTCT TTCATGGGTTTGGGTGCTCTGGCTCTGCTGCGAGGGTTGCTCACATGTTC ATCCAAATCAACTTCATCTCTAGGCAAAAGACCTGCATTGACGAGGAAAA AGCGAGCTTGAAATTTTCAGGAATGAATCAAACATAAGAAAATGGAGAAA AGAGCATAACCGTAGGTGCGAGGGGATGAAGAAGCATGCCAAGGCCCCCT CATGAAACCaattttttgtatgtttttatttatttaaatctgAGTCCCCT TTGACTTaatatttgagaaaaagattttGAACATCAAATTCCATCATGTT GCTTTTTTGCTGACATATTTgctatgaaaaaaataaaattctatct
back to top

Coding sequence (CDS) from alignment at Chr11:12264736..12266581+

>drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.631 ID=drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.631; Name=PvulFLAVERTChr11.631; organism=Phaseolus vulgaris; type=CDS; length=504bp; location=Sequence derived from: Chr11:12264736..12266581+ (Phaseolus vulgaris
ATGGGTGTTGTGTTGAAGCTAGTAGACGCCATTCTGTTTCTGTTCTTCCT
CTTGATAGCAGTGGTGGCTCCTCTCATTGATGCTCAAACGTGTCTTCCTC
TCAGTTATTTCCCTGAATTTCTTGTCCAACTCAAGGAACACTACACCCAA
GACTATGGTGATTACCTTCTGGCTGAAAAGCCACACTTTTTTGTAGGCCT
TGTTTGGCTAGAGCTTCTATTCCAATGGCCCCTTGCACTCCTCAACCTCT
ATGCCATTCTCACTTCCAAGCCTTGGTTCAACACCACTTGCTTGATGTAT
GGTGTCTCTACCTCTACCTCCATGGTTGCTATATTATCAGAAATGATGAA
TTCGAATAGGGCATCTGAGAAGCTAATAACAGTGTATGCCTCTTTCATGG
GTTTGGGTGCTCTGGCTCTGCTGCGAGGGTTGCTCACATGTTCATCCAAA
TCAACTTCATCTCTAGGCAAAAGACCTGCATTGACGAGGAAAAAGCGAGC
TTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR016964Sigma2_recept
IPR033118EXPERA
IPR051987Sigma-2_receptor-like