PvulFLAVERTChr11.664
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of PvulFLAVERTChr11.664 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445M2X9|A0A445M2X9_GLYSO (Endonuclease/exonuclease/phosphatase domain-containing protein (Fragment) OS=Glycine soja OX=3848 GN=D0Y65_001491 PE=4 SV=1) HSP 1 Score: 202.986 bits (515), Expect = 1.187e-59 Identity = 93/239 (38.91%), Postives = 145/239 (60.67%), Query Frame = 0 Query: 1 MIIVTFNIRGVGGGTKSRYLRHIISCEGAEFVCLQETKVKSISDAKCYSLWGDNKVGWLHYEGENGGGGMLSMWHQEAFIYETHRMGNGYIAVYGRLVKDNLRCVVVNVYAACNLRDKKTLWMELSNIKSSSHEVLWCFCGDFNAIRSHDERRGSTNRVDYTSEIRGFNSFIDDNLLLDTPIMGKNYTWFNSNGSAKSKIDRVLVTEEWMEKWPTCKQYAQRREVSDHCAIVVKSVVRD 239
M IV++NIRG+ G K +R ++ + + +C+ ETK + I A C +LWGD+ VGW N GG+L +W+Q+AF E G+G+I + G +++N + VVN+Y+ C++ K+ W L ++ + LWCF GDFN IR ER G ++R + I FN++I + L + P +GK +TWF NG+AKS++DR LV+ +W+ KWP C + R SDHC I++++ V D
Sbjct: 65 MNIVSYNIRGLRRGVKWAAIRRMVRKQKVDMICIHETKRELIDKAACQALWGDSDVGWEFQLVINTAGGLLCVWNQQAFKLERRETGSGFILLEGVWIQENQKTSVVNLYSPCDVHQKRIQWDSLKLLRQQDPDGLWCFMGDFNNIRYQSEREGVSHRGTEATNINDFNNWIAELELEEIPCVGKRFTWFRPNGAAKSRLDRFLVSPKWLHKWPACTNFTLERNFSDHCPIMLRAKVID 303
BLAST of PvulFLAVERTChr11.664 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445IK09|A0A445IK09_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_026444 PE=4 SV=1) HSP 1 Score: 204.142 bits (518), Expect = 2.581e-58 Identity = 100/239 (41.84%), Postives = 144/239 (60.25%), Query Frame = 0 Query: 1 MIIVTFNIRGVGGGTKSRYLRHIISCEGAEFVCLQETKVKSISDAKCYSLWGDNKVGWLHYEGENGGGGMLSMWHQEAFIYETHRMGNGYIAVYGRLVKDNLRCVVVNVYAACNLRDKKTLWMELSNIKSSSHEVLWCFCGDFNAIRSHDERRGSTNRVDYTSEIRGFNSFIDDNLLLDTPIMGKNYTWFNSNGSAKSKIDRVLVTEEWMEKWPTCKQYAQRREVSDHCAIVVKSVVRD 239
MII+++N RG+G G K +R + + VCLQETK + ++ C S+WGD+ V W N GG+L MW+ AF + G ++ + GR KDNL +VNVYA C++ K+ LW +L ++K+S+ E WCF GDFN+IRS DER GS+ R + GFN +ID L + G YTW NGSA+S++DR LV+ +W+ KWP Q+ R+ SDHC I++K+ + D
Sbjct: 340 MIILSYNCRGLGRGVKWAAIRKLNFKHKVDLVCLQETKKEIVTKVVCQSIWGDDSVSWDSVPSINTAGGLLCMWNNLAFEVDRRVKGTNFLMLAGRWAKDNLLLYIVNVYAPCDIAGKRELWDQLKHLKASNPEGAWCFLGDFNSIRSMDERIGSSQRYVGVHDSAGFNEWIDTMELQEIKSFGNIYTWCRPNGSARSRLDRCLVSVQWLNKWPNSSQHVLNRDYSDHCPILLKTDMLD 578
BLAST of PvulFLAVERTChr11.664 vs. ExPASy TrEMBL (2024)
Match: tr|G8DCX0|G8DCX0_PHAVU (Putative retrotransposon OS=Phaseolus vulgaris OX=3885 PE=4 SV=1) HSP 1 Score: 208.379 bits (529), Expect = 9.426e-58 Identity = 100/214 (46.73%), Postives = 130/214 (60.75%), Query Frame = 0 Query: 18 RYLRHIISCEGAEFVCLQETKVKSISDAKCYSLWGDNKVGWLHYEGENGGGGMLSMWHQEAFIYETHRMGNGYIAVYGRLVKDNLRCVVVNVYAACNLRDKKTLWMELSNIKSSSHEVLWCFCGDFNAIRSHDERRGSTNRVDYTSEIRGFNSFIDDNLLLDTPIMGKNYTWFNSNGSAKSKIDRVLVTEEWMEKWPTCKQYAQRREVSDHCAI 231
RY+RH++ E A+FVC+QETK K ISDA+C+S WGDNKVGW+H +GE GGG +LS+WH+E F YE H MG G+I V G+ +K + S ER+G +R D + EI GFN+FI+ N L D P++GK +TWF +G+AKS+IDR LVTEEW++KWP CKQY RREVSDHC +
Sbjct: 594 RYIRHLVGKEEADFVCVQETKAKEISDARCFSWWGDNKVGWIHNKGEEGGGSLLSLWHKEVFSYENHLMGKGFIVVIGQHLK---------------------------------------------SSSSRSERKGIRDRSDQSREISGFNNFIESNSLFDLPLVGKKFTWFKPDGTAKSRIDRALVTEEWVQKWPMCKQYVLRREVSDHCTL 762
BLAST of PvulFLAVERTChr11.664 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151TSI2|A0A151TSI2_CAJCA (Endonuclease/exonuclease/phosphatase domain-containing protein OS=Cajanus cajan OX=3821 GN=KK1_009250 PE=4 SV=1) HSP 1 Score: 192.586 bits (488), Expect = 3.519e-55 Identity = 95/235 (40.43%), Postives = 137/235 (58.30%), Query Frame = 0 Query: 1 MIIVTFNIRGVGGGTKSRYLRHIISCEGAEFVCLQETKVKSISDAKCYSLWGDNKVGWLHYEGENGGGGMLSMWHQEAFIYETHRMGNGYIAVYGRLVKDNLRCVVVNVYAACNLRDKKTLWMELSNIKSSSHEVLWCFCGDFNAIRSHDERRGSTNRVDYTSE-IRGFNSFIDDNLLLDTPIMGKNYTWFNSNGSAKSKIDRVLVTEEWMEKWPTCKQYAQRREVSDHCAIVVK 234
M I++FNIRG+GG K +R+++ E + VCLQETK +S+ C SLWG + W Y E GG++S+W F ET + +IA+YGR + NL C VVNVYA C + KK LW+ L + WC GDFN+++ ER+G V++ E F FI L+D P+ G+ YTW+ +G+ S+I+R L+T W+++WP Q+A R VSDHC I++K
Sbjct: 1 MKILSFNIRGLGGRLKVVEVRNLVRSENVDMVCLQETKKESVDKKLCASLWGADDFEWAFYPSEGRSGGIVSIWKTSIFKLETSIIQPNFIALYGRWGEQNLDCWVVNVYAPCVQQLKKDLWVRLHALMDEKGGARWCLVGDFNSVKDAKERKGVA--VNFRREKAECFAEFIQKTSLIDLPLSGRKYTWYKPDGTCMSRINRFLITIGWLDQWPNLSQWALSRGVSDHCPIILK 233
BLAST of PvulFLAVERTChr11.664 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0B2SAJ0|A0A0B2SAJ0_GLYSO (Endonuclease/exonuclease/phosphatase domain-containing protein (Fragment) OS=Glycine soja OX=3848 GN=glysoja_043147 PE=4 SV=1) HSP 1 Score: 186.808 bits (473), Expect = 8.676e-55 Identity = 83/235 (35.32%), Postives = 139/235 (59.15%), Query Frame = 0 Query: 1 MIIVTFNIRGVGGGTKSRYLRHIISCEGAEFVCLQETKVKSISDAKCYSLWGDNKVGWLHYEGENGGGGMLSMWHQEAFIYETHRMGNGYIAVYGRLVKDNLRCVVVNVYAACNLRDKKTLWMELSNIKSSSHEVLWCFCGDFNAIRSHDERRGSTNRVDYTSEIRGFNSFIDDNLLLDTPIMGKNYTWFNSNGSAKSKIDRVLVTEEWMEKWPTCKQYAQRREVSDHCAIVVKS 235
M I+T+N RG+G G K +R +++ + + +C+QETK + I C++LWGD V W + GG+L +W ++ F E +G Y+ + G+ ++++ + +VY+ C+++ K+ LW + +K H+ LWC GDFN R+H ER G+ +R R FN +I+D + + P +G +TW NGSA+SK+DR LV+ +W+ KWP Q+ R SDHC ++++S
Sbjct: 8 MNIITYNARGLGRGVKWPAIRRLVNKQHVDMLCIQETKKELIDRDICHALWGDPDVQWADQPATHTAGGILCLWSEKVFRMERKIIGPRYVMMSGKWIQEDQSVNIASVYSPCDIQGKRVLWEAIKQLKCQHHDGLWCILGDFNCTRNHTERFGTCHRSLENIGSREFNGWIEDLEVEEPPWVGSKFTWVRPNGSARSKLDRFLVSADWLTKWPGTTQFTLERNFSDHCPLLLRS 242
BLAST of PvulFLAVERTChr11.664 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2Z6MIT1|A0A2Z6MIT1_TRISU (Reverse transcriptase domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_172690 PE=4 SV=1) HSP 1 Score: 198.364 bits (503), Expect = 2.783e-54 Identity = 96/233 (41.20%), Postives = 147/233 (63.09%), Query Frame = 0 Query: 1 MIIVTFNIRGVGGGTKSRYLRHIISCEGAEFVCLQETKVKSISDAKCYSLWGDNKVGWLHYEGENGGGGMLSMWHQEAFIYETHRMGNGYIAVYGRLVKDNLRCVVVNVYAACNLRDKKTLWMELSNIKSSSHEVLWCFCGDFNAIRSHDERRGSTNRV--DYTSEIRGFNSFIDDNLLLDTPIMGKNYTWFNSNGSAKSKIDRVLVTEEWMEKWPTCKQYAQRREVSDHCAI 231
MII +FNIRG+G K R +R ++ E +F+ LQETK++ I+D+ +SLWG N GW GG+LSMW++ +G G++ V LV +C +VNVYA CNLRDK+ LW +L KS + LWC GDFN++R+ ERRG+ V ++SE+ F+ F+++ L+D PI+G+++TWF+ NG A S++DR+LV+ +W + W + + R+V+DHC +
Sbjct: 9 MIISSFNIRGMGSRVKRRKVRDLVRAEQLDFLALQETKMEMITDSVVHSLWGSNDCGWAFLPAVGNSGGILSMWNKVKASLVFTFIGEGFVGVCLDLVGVLRKCFIVNVYAKCNLRDKRRLWGDLLMSKSGFGDGLWCVLGDFNSVRASLERRGAGQIVAGGHSSEMLAFDLFLNNLGLVDLPIIGRSFTWFHPNGVAMSRLDRILVSPDWFDIWGSPNVWVLARDVADHCPL 241
BLAST of PvulFLAVERTChr11.664 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445H5T2|A0A445H5T2_GLYSO (Transposon TX1 149 kDa protein OS=Glycine soja OX=3848 GN=D0Y65_038654 PE=4 SV=1) HSP 1 Score: 197.978 bits (502), Expect = 3.930e-54 Identity = 88/235 (37.45%), Postives = 144/235 (61.28%), Query Frame = 0 Query: 1 MIIVTFNIRGVGGGTKSRYLRHIISCEGAEFVCLQETKVKSISDAKCYSLWGDNKVGWLHYEGENGGGGMLSMWHQEAFIYETHRMGNGYIAVYGRLVKDNLRCVVVNVYAACNLRDKKTLWMELSNIKSSSHEVLWCFCGDFNAIRSHDERRGSTNRVDYTSEIRGFNSFIDDNLLLDTPIMGKNYTWFNSNGSAKSKIDRVLVTEEWMEKWPTCKQYAQRREVSDHCAIVVKS 235
M I ++N+RG+G G K +R +I+ E + +CLQETK I C ++WG ++V W N GG+L MW + F + +GNG+I + G +++++ +V VY+ C++ +K+ LW + +K +S LWC GDFN IR+ +ER G ++R+ + ++ FN +I+D LL+ P +G+ YTWF NG +KS++DR L++ EW + WP Q+ R SDHC I++K+
Sbjct: 1 MNIASYNVRGLGKGVKWAAIRRLINKENIQMLCLQETKKDIIDRTLCQAIWGSDEVKWEMQPAINSAGGILCMWTESVFKLQNKVIGNGFILLEGVCNREDMKIGIVTVYSPCDINNKRLLWDSVKQLKQASQVRLWCVLGDFNCIRNPNERIGKSDRLVGDNSMQEFNEWIEDMELLEVPNVGRQYTWFRPNGESKSRLDRALISPEWRDTWPESVQFTLARNFSDHCPILIKA 235
BLAST of PvulFLAVERTChr11.664 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2Z6PFV4|A0A2Z6PFV4_TRISU (Reverse transcriptase domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_187280 PE=4 SV=1) HSP 1 Score: 195.667 bits (496), Expect = 2.712e-53 Identity = 96/236 (40.68%), Postives = 141/236 (59.75%), Query Frame = 0 Query: 1 MIIVTFNIRGVGGGTKSRYLRHIISCEGAEFVCLQETKVKSISDAKCYSLWGDNKVGWLHYEGENGGGGMLSMWHQEAFIYETHRMGNGYIAVYGRLVKDNLRCVVVNVYAACNLRDKKTLWMELSNIKSSSHEVLWCFCGDFNAIRSHDERRGSTNRV--DYTSEIRGFNSFIDDNLLLDTPIMGKNYTWFNSNGSAKSKIDRVLVTEEWMEKWPTCKQYAQRREVSDHCAIVVK 234
MI+ T NIRG+G K R +R +S E +F+ LQETK++S SD+ SLWG W GG++S+W + F G+G++ V +V+D RC V+NVYA CNL DK+ LW E+ + WC GDFNA+R ERRG+ V + E+ F+ F+++ L+D P++G+ +TWF+ NG A S++DRVL++ EW+ KW +A R+VSDHC +VV+
Sbjct: 753 MIVGTLNIRGLGSRVKRRKVREFVSGEKVDFLALQETKLESFSDSFIQSLWGSENCDWACLPAIGNSGGLISIWKKSLFSVVYTFSGHGFVGVCLDVVQDQSRCFVLNVYAKCNLSDKRRLWGEIIMSRRGFGRGCWCVLGDFNAVRDVSERRGARQLVVNSQSKEVLEFDLFLEELELIDMPLIGRRFTWFHPNGVAMSRLDRVLLSAEWISKWENPNVWALSRDVSDHCPLVVR 988
BLAST of PvulFLAVERTChr11.664 vs. ExPASy TrEMBL (2024)
Match: tr|A0A392PBC2|A0A392PBC2_9FABA (Endonuclease/exonuclease/phosphatase domain-containing protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 3.975e-53 Identity = 84/239 (35.15%), Postives = 144/239 (60.25%), Query Frame = 0 Query: 1 MIIVTFNIRGVGGGTKSRYLRHIISCEGAEFVCLQETKVKSISDAKCYSLWGDNKVGWLHYEGENGGGGMLSMWHQEAFIYETHRMGNGYIAVYGRLVKDNLRCVVVNVYAACNLRDKKTLWMELSNIKSSSHEVLWCFCGDFNAIRSHDERRGSTNRVDYTSEIRGFNSFIDDNLLLDTPIMGKNYTWFNSNGSAKSKIDRVLVTEEWMEKWPTCKQYAQRREVSDHCAIVVKSVVRD 239
M I+++N+RG+GG K + + +I + +C+QETK++ + ++C +WG N G+ E E GGML +W+ F ++ G+ Y+ V G ++ + +VNVYA C K+ LW +LS++ ++ WC GDFN+IR ER+G + + E+ F+SFI D+ L+D P++G+ +TW +GS+ S+IDR L++EEW +WP Q+ + +SDHC I+++ V++
Sbjct: 1 MKIISYNVRGLGGVAKKKDVSQLIKKINPDVMCVQETKLQKLERSQCEVMWGSNDFGFSSKESEGRSGGMLMIWNSRKFKMQSESRGDHYLCVQGLWGQEEIPIAIVNVYAPCEAAKKRVLWEKLSDLLATRPGFRWCVLGDFNSIRMEVERKGVGDFM-RREEMIEFDSFITDSELVDLPLIGRKFTWSRIDGSSMSRIDRFLLSEEWCMQWPNSSQWCLEKGLSDHCPILLQDEVKN 238
BLAST of PvulFLAVERTChr11.664 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445LNP2|A0A445LNP2_GLYSO (Transposon TX1 149 kDa protein OS=Glycine soja OX=3848 GN=D0Y65_003855 PE=4 SV=1) HSP 1 Score: 194.126 bits (492), Expect = 1.008e-52 Identity = 94/239 (39.33%), Postives = 143/239 (59.83%), Query Frame = 0 Query: 1 MIIVTFNIRGVGGGTKSRYLRHIISCEGAEFVCLQETKVKSISDAKCYSLWGDNKVGWLHYEGENGGGGMLSMWHQEAFIYETHRMGNGYIAVYGRLVKDNLRCVVVNVYAACNLRDKKTLWMELSNIKSSSHEVLWCFCGDFNAIRSHDERRGSTNRVDYTSEIRGFNSFIDDNLLLDTPIMGKNYTWFNSNGSAKSKIDRVLVTEEWMEKWPTCKQYAQRREVSDHCAIVVKSVVRD 239
MII+++N RG+G G K +R + + VCLQETK ++I+ C ++WGD+ V W + GG+L MW+ AF + G ++ + GR +K+NL+ +++NVYA C+ K+ LW EL +K+S+ E +WCF DFN+IRS +ER GS+ R + GFN I D L + +TW NGS +S++DR LV+E+W+ KWP Q R+ SDHC I++K+ + D
Sbjct: 709 MIILSYNCRGLGRGVKWAAIRKLNLKYKVDLVCLQETKKENITKLICQNIWGDSNVSWDSVPSIHTAGGLLCMWNNLAFEVDGRVKGRNFLMLVGRWIKENLKLLILNVYAPCDTAGKRELWEELKQLKASNPEGVWCFLEDFNSIRSMEERSGSSQRTVGVYDSAGFNDRISDMELQEIKCFDSRFTWCRPNGSVRSRLDRCLVSEQWLVKWPDSSQQVLHRDYSDHCPILLKTDMVD 947 The following BLAST results are available for this feature:
BLAST of PvulFLAVERTChr11.664 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-19 (Blastp of Phaseolus vulgaris cv. Flavert v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of PvulFLAVERTChr11.664 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-19 (Blastp of Phaseolus vulgaris cv. Flavert v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of PvulFLAVERTChr11.664 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-19 (Blastp of Phaseolus vulgaris cv. Flavert v1.0 proteins vs arabidopsis Araport11) Total hits: 0 Position : 0 Zoom : x 1
InterPro
Analysis Name: Blastp of Phaseolus vulgaris cv. Flavert v1.0 proteins vs UniProt TrEMBL
Date Performed: 2024-08-19
Analysis Name: InterProScan Analysis for Phaseolus vulgaris cv. Flavert genome v1.0 Date Performed: 2024-08-19 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.664 ID=drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.664; Name=PvulFLAVERTChr11.664; organism=Phaseolus vulgaris; type=mRNA; length=723bpback to top protein sequence of drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.664 >drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.664 ID=drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.664; Name=drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.664; organism=Phaseolus vulgaris; type=polypeptide; length=240bpback to top mRNA from alignment at Chr11:13319212..13319934+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.664 ID=drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.664; Name=PvulFLAVERTChr11.664; organism=Phaseolus vulgaris; type=mRNA; length=723bp; location=Sequence derived from: Chr11:13319212..13319934+ (Phaseolus vulgarisback to top Coding sequence (CDS) from alignment at Chr11:13319212..13319934+ >drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.664 ID=drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.664; Name=PvulFLAVERTChr11.664; organism=Phaseolus vulgaris; type=CDS; length=723bp; location=Sequence derived from: Chr11:13319212..13319934+ (Phaseolus vulgarisback to top |