Vigun08g040600.1

Transcript Overview
NameVigun08g040600.1
Unique NamedrVigUngu.IT97K.1.2.Vigun08g040600.1.v1.2
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length357
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu08chromosomeVu08:4052111..4052842 +Vigna unguiculata L. Walp IT97K-499-35 genome v1.2n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
anvunL0109Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvunL0340Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
avjvunL396Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anvunL0714Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvunL0716Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
avjvunL520Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvunL288Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
carvunL363Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
ccavunL281Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavunL375Cajanus cajan cv. Asha genome v2.0Cajanus cajan
pvvunL056Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
vunvunR265Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vrvvunL359Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvunL422Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvunL731Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
vuvunL456Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vuvunL514Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Phvul.001G038500.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Cc_v2.0_11422.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
rna-XM_014648823.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Va07G065360.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigun08g040600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun08g040600drVigUngu.IT97K.1.2.Vigun08g040600.v1.2Vigna unguiculatagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drVigUngu.IT97K.1.2.Vigun08g040600.1.v1.2.exon.1drVigUngu.IT97K.1.2.Vigun08g040600.1.v1.2.exon.1Vigna unguiculataexon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drVigUngu.IT97K.1.2.Vigun08g040600.1.v1.2.five_prime_UTR.1drVigUngu.IT97K.1.2.Vigun08g040600.1.v1.2.five_prime_UTR.1Vigna unguiculatafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drVigUngu.IT97K.1.2.Vigun08g040600.1.v1.2.CDS.1drVigUngu.IT97K.1.2.Vigun08g040600.1.v1.2.CDS.1Vigna unguiculataCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drVigUngu.IT97K.1.2.Vigun08g040600.1.v1.2.three_prime_UTR.1drVigUngu.IT97K.1.2.Vigun08g040600.1.v1.2.three_prime_UTR.1Vigna unguiculatathree_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
drVigUngu.IT97K.1.2.Vigun08g040600.1.v1.2drVigUngu.IT97K.1.2.Vigun08g040600.1.v1.2Vigna unguiculatapolypeptide
drVigUngu.IT97K.1.2.Vigun08g040600.1.v1.2drVigUngu.IT97K.1.2.Vigun08g040600.1.v1.2-proteinVigna unguiculatapolypeptide


Homology
[Close]
BLAST of Vigun08g040600.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4D6MCP9|A0A4D6MCP9_VIGUN (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG7g440 PE=4 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 6.178e-61
Identity = 94/96 (97.92%), Postives = 96/96 (100.00%), Query Frame = 0 
Query:   23 MKSKSICFCIRGRHRKRKESKVEELEKHVKPNYKVKTKARGFVGDGGDSNVVDGGSMVGSNEAVMSVAHMLLMSGNEDGCGNGHLGESGADAAAAD 118
            MKSKSICFCIRGRHRKRKESKVE+LEKHVKPNYKVKTKARGFVGDGGDSNVVDGGSMVGSNEAVMSVAHMLLMSGNEDGCGNGH+GESGADAAAAD
Sbjct:    1 MKSKSICFCIRGRHRKRKESKVEDLEKHVKPNYKVKTKARGFVGDGGDSNVVDGGSMVGSNEAVMSVAHMLLMSGNEDGCGNGHMGESGADAAAAD 96
[Close]
BLAST of Vigun08g040600.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A1S3UEE0|A0A1S3UEE0_VIGRR (Uncharacterized protein LOC106764557 OS=Vigna radiata var. radiata OX=3916 GN=LOC106764557 PE=4 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 6.325e-43
Identity = 81/101 (80.20%), Postives = 84/101 (83.17%), Query Frame = 0 
Query:   23 MKSKSICFCIRGRHRKRKESKVEELEKHVKPNYKVKTK---ARGFVGDGGDSNVVDGGSMVGSNE-----AVMSVAHMLLMSGNEDGCGNGHLGESGADAA 115
            MKSKSICFCIRGRH KRKESKVE+LEKHVKPNYKVKTK    R FVGDGGDSN V GGSMVGSN+     AVMS AHM LM GNEDG GNGH+GESGADAA
Sbjct:    1 MKSKSICFCIRGRHSKRKESKVEDLEKHVKPNYKVKTKGCDPRSFVGDGGDSN-VHGGSMVGSNDAGVSVAVMSAAHMSLMIGNEDGFGNGHMGESGADAA 100
[Close]
BLAST of Vigun08g040600.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0S3RPF4|A0A0S3RPF4_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.03G250900 PE=4 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.120e-41
Identity = 80/102 (78.43%), Postives = 84/102 (82.35%), Query Frame = 0 
Query:   23 MKSKSICFCIRGRHRKRKESKVEELEKHVKPNYKVKTK---ARGFVGDGGDSNVVDGGSMVGSNE-----AVMSVAHMLLMSGNEDGCGNGHLGESGADAAA 116
            MKSKSICFCIRGRH KRKESKVE+LEKHVKPNYKVKTK    R FVGDGGDSN V GGSMVGSN+     AV+S AHM  MSGNEDGCGNGH+GESGADA  
Sbjct:    1 MKSKSICFCIRGRHSKRKESKVEDLEKHVKPNYKVKTKGCDPRSFVGDGGDSN-VHGGSMVGSNDTGVSVAVISAAHM-SMSGNEDGCGNGHMGESGADAGG 100
[Close]
BLAST of Vigun08g040600.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0L9V1K6|A0A0L9V1K6_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan07g254500 PE=4 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.120e-41
Identity = 80/102 (78.43%), Postives = 84/102 (82.35%), Query Frame = 0 
Query:   23 MKSKSICFCIRGRHRKRKESKVEELEKHVKPNYKVKTK---ARGFVGDGGDSNVVDGGSMVGSNE-----AVMSVAHMLLMSGNEDGCGNGHLGESGADAAA 116
            MKSKSICFCIRGRH KRKESKVE+LEKHVKPNYKVKTK    R FVGDGGDSN V GGSMVGSN+     AV+S AHM  MSGNEDGCGNGH+GESGADA  
Sbjct:    1 MKSKSICFCIRGRHSKRKESKVEDLEKHVKPNYKVKTKGCDPRSFVGDGGDSN-VHGGSMVGSNDTGVSVAVISAAHM-SMSGNEDGCGNGHMGESGADAGG 100
[Close]
BLAST of Vigun08g040600.1 vs. ExPASy TrEMBL (2024)
Match: tr|V7CSD0|V7CSD0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G038500g PE=4 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.817e-22
Identity = 57/92 (61.96%), Postives = 64/92 (69.57%), Query Frame = 0 
Query:   23 MKSKSICFCIRGRHRKRKESKVEELEKHVKPNYKVKTK---ARGFVGDGGDSNVVDGGSMVGSNE-----AVMSVAHMLLMSGNEDGCGNGH 106
            MKSK+ICFCI G   KRKE+KVE+LEKHVKPN+KVKTK    R FV DGG+ N VDG S+V S +     A M   HM LMSG  DG GNGH
Sbjct:    1 MKSKTICFCIGGLKSKRKENKVEDLEKHVKPNHKVKTKGCGPRTFVVDGGEIN-VDGASIVASKDTGVAAAEMIAVHMSLMSG-IDGSGNGH 90
[Close]
BLAST of Vigun08g040600.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A371HHF1|A0A371HHF1_MUCPR (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_14382 PE=4 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.878e-17
Identity = 56/103 (54.37%), Postives = 70/103 (67.96%), Query Frame = 0 
Query:   23 MKSKSICFCIRGRHRKRKESKVEELEK--HVKPNYKVKTK---ARGFVGDGGDSNVVDGGSMVGSNEAVMSVA-----HMLLMSGNE--DGCGNGHLGESGAD 113
            MKSK+ICFCIRGR+ K KE++V++LEK  HVKP +K KTK   +   +GD G  N V G S V SN+A ++ A     H+ LMS NE  DGCG+G  GESGAD
Sbjct:    1 MKSKTICFCIRGRNSKSKENEVKDLEKLSHVKPGHKGKTKESDSTTPLGDDGGIN-VHGASTVASNDAGVTAAFVAATHVSLMSANEGQDGCGHG--GESGAD 100
[Close]
BLAST of Vigun08g040600.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445GAB6|A0A445GAB6_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_046693 PE=4 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.660e-12
Identity = 44/87 (50.57%), Postives = 57/87 (65.52%), Query Frame = 0 
Query:   23 MKSKSICFCIRGRHRKRKESKVEELEK--HVKPNYKVKTK---ARGFVGDGGDSNVVDGGSMVGSNE-----AVMSVAHMLLMSGNE 99
            MKSK++CF IRGR+ K KE+KVE+LEK  HVKPN+K KTK   +   VGD      V G ++V SN+     AV++ AHM LM  N+
Sbjct:    1 MKSKTVCFGIRGRNNKSKENKVEDLEKLSHVKPNHKGKTKRCASTTPVGDDDGGINVHGANIVASNDAGVAAAVITAAHMSLMCVND 87
[Close]
BLAST of Vigun08g040600.1 vs. ExPASy TrEMBL (2024)
Match: tr|I1MX80|I1MX80_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100817633 PE=4 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.660e-12
Identity = 44/87 (50.57%), Postives = 57/87 (65.52%), Query Frame = 0 
Query:   23 MKSKSICFCIRGRHRKRKESKVEELEK--HVKPNYKVKTK---ARGFVGDGGDSNVVDGGSMVGSNE-----AVMSVAHMLLMSGNE 99
            MKSK++CF IRGR+ K KE+KVE+LEK  HVKPN+K KTK   +   VGD      V G ++V SN+     AV++ AHM LM  N+
Sbjct:    1 MKSKTVCFGIRGRNNKSKENKVEDLEKLSHVKPNHKGKTKRCASTTPVGDDDGGINVHGANIVASNDAGVAAAVITAAHMSLMCVND 87
[Close]
BLAST of Vigun08g040600.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0AA86T6T9|A0AA86T6T9_9FABA (Uncharacterized protein OS=Sphenostylis stenocarpa OX=92480 GN=AYBTSS11_LOCUS24962 PE=4 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.080e-12
Identity = 50/99 (50.51%), Postives = 60/99 (60.61%), Query Frame = 0 
Query:   23 MKSKSICFCIRGRHRKRKESKVEELEK--HVKPNYKVKTK---ARGFVGDGGDSNV--------VDGGSMVGSNEAVMSVAHMLLMSGN--EDGCGNGH 106
            MK+K+ICFCIR R+RK KES+VE+LEK  HVKP +K KTK    R FVGDG             +  G+  G   AVM+ AHM LMS    +DG GN H
Sbjct:    1 MKNKTICFCIRRRNRKTKESRVEDLEKLSHVKPKHKGKTKGCDPRTFVGDGDGGGGGFNVHGGSIVAGNDEGVAAAVMTAAHMSLMSAYDCQDGSGNCH 99
[Close]
BLAST of Vigun08g040600.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8B8JQR2|A0A8B8JQR2_ABRPR (Uncharacterized protein LOC113848359 OS=Abrus precatorius OX=3816 GN=LOC113848359 PE=4 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 2.369e-10
Identity = 44/94 (46.81%), Postives = 56/94 (59.57%), Query Frame = 0 
Query:   23 MKSKSICFCIRGRHRKRKESKVEELEK--HVKPNYKVKTKARGFVGDGGD--SNVVDGGSMVGSNE-----AVMSVAHMLLMSGNE--DGCGNG 105
            MK KSICFCIRG  +K KE++VEELEK  HVK + + +TK        GD   N VDG + + S +     AV++ AH+ LMS  E  DG G G
Sbjct:    1 MKCKSICFCIRGHSKKSKENEVEELEKVSHVKASNRGRTKGVASTIPAGDGAGNNVDGTNTIASTDAGVAVAVVTSAHVSLMSVTEGQDGSGRG 94
The following BLAST results are available for this feature:
BLAST of Vigun08g040600.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-19 (Blastp of Vigna unguiculata L. Walp IT97K-499-35 v1.2 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A4D6MCP9|A0A4D6MCP9_VIGUN6.178e-6197.92Uncharacterized protein OS=Vigna unguiculata OX=39... [more]
tr|A0A1S3UEE0|A0A1S3UEE0_VIGRR6.325e-4380.20Uncharacterized protein LOC106764557 OS=Vigna radi... [more]
tr|A0A0S3RPF4|A0A0S3RPF4_PHAAN1.120e-4178.43Uncharacterized protein OS=Vigna angularis var. an... [more]
tr|A0A0L9V1K6|A0A0L9V1K6_PHAAN1.120e-4178.43Uncharacterized protein OS=Phaseolus angularis OX=... [more]
tr|V7CSD0|V7CSD0_PHAVU9.817e-2261.96Uncharacterized protein OS=Phaseolus vulgaris OX=3... [more]
tr|A0A371HHF1|A0A371HHF1_MUCPR1.878e-1754.37Uncharacterized protein (Fragment) OS=Mucuna pruri... [more]
tr|A0A445GAB6|A0A445GAB6_GLYSO1.660e-1250.57Uncharacterized protein OS=Glycine soja OX=3848 GN... [more]
tr|I1MX80|I1MX80_SOYBN1.660e-1250.57Uncharacterized protein OS=Glycine max OX=3847 GN=... [more]
tr|A0AA86T6T9|A0AA86T6T9_9FABA2.080e-1250.51Uncharacterized protein OS=Sphenostylis stenocarpa... [more]
tr|A0A8B8JQR2|A0A8B8JQR2_ABRPR2.369e-1046.81Uncharacterized protein LOC113848359 OS=Abrus prec... [more]
back to top
BLAST of Vigun08g040600.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-19 (Blastp of Vigna unguiculata L. Walp IT97K-499-35 v1.2 proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Vigun08g040600.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-19 (Blastp of Vigna unguiculata L. Walp IT97K-499-35 v1.2 proteins vs arabidopsis Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Sequences
The following sequences are available for this feature:

mRNA sequence

>drVigUngu.IT97K.1.2.Vigun08g040600.1.v1.2 ID=drVigUngu.IT97K.1.2.Vigun08g040600.1.v1.2; Name=Vigun08g040600.1; organism=Vigna unguiculata; type=mRNA; length=357bp
ATGGTCTGTTTTAATTTCTTTTCTTTTTGTGATAACCATTATCAATTAAA
CTTTTTTTCTCGAAAGATGAAAAGCAAAAGCATATGTTTCTGCATCAGAG
GGCGCCACAGGAAGAGAAAGGAAAGCAAAGTGGAAGAGTTGGAGAAACAT
GTGAAGCCTAATTACAAGGTGAAAACCAAAGCAAGAGGTTTTGTTGGTGA
TGGTGGTGACAGCAATGTTGTTGATGGAGGCAGCATGGTTGGTAGCAATG
AAGCTGTGATGAGTGTAGCTCATATGTTATTGATGAGTGGCAATGAAGAT
GGATGTGGGAATGGGCATCTGGGGGAATCTGGGGCAGATGCTGCTGCTGC
TGACTGA
back to top

protein sequence of drVigUngu.IT97K.1.2.Vigun08g040600.1.v1.2

>drVigUngu.IT97K.1.2.Vigun08g040600.1.v1.2 ID=drVigUngu.IT97K.1.2.Vigun08g040600.1.v1.2; Name=drVigUngu.IT97K.1.2.Vigun08g040600.1.v1.2; organism=Vigna unguiculata; type=polypeptide; length=119bp
MVCFNFFSFCDNHYQLNFFSRKMKSKSICFCIRGRHRKRKESKVEELEKH
VKPNYKVKTKARGFVGDGGDSNVVDGGSMVGSNEAVMSVAHMLLMSGNED
GCGNGHLGESGADAAAAD*
back to top

mRNA from alignment at Vu08:4052111..4052842+

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>drVigUngu.IT97K.1.2.Vigun08g040600.1.v1.2 ID=drVigUngu.IT97K.1.2.Vigun08g040600.1.v1.2; Name=Vigun08g040600.1; organism=Vigna unguiculata; type=mRNA; length=732bp; location=Sequence derived from: Vu08:4052111..4052842+ (Vigna unguiculata
CACCGTTTATGTTATAAGAGAGAGGAAGAAGGAAAGCTGGCAGCATGGTC
TGTTTTAATTTCTTTTCTTTTTGTGATAACCATTATCAATTAAACTTTTT
TTCTCGAAAGATGAAAAGCAAAAGCATATGTTTCTGCATCAGAGGGCGCC
ACAGGAAGAGAAAGGAAAGCAAAGTGGAAGAGTTGGAGAAACATGTGAAG
CCTAATTACAAGGTGAAAACCAAAGCAAGAGGTTTTGTTGGTGATGGTGG
TGACAGCAATGTTGTTGATGGAGGCAGCATGGTTGGTAGCAATGAAGCTG
TGATGAGTGTAGCTCATATGTTATTGATGAGTGGCAATGAAGATGGATGT
GGGAATGGGCATCTGGGGGAATCTGGGGCAGATGCTGCTGCTGCTGACTG
ATATGTCATACTCTGATGTTTCTGTCAAACACTAAACTTTCATCTACTTT
CTTAAATGTTTCTTTTTCGTCTTCTTCTTTAACTGTGATGATTATATTTT
AATGATACTTGTTGTGAAGTTTCAATTTTGATAGGGAAGTATGACAAAAG
CTAGTTTGAAGTTATCATTCTTCTCATGCAAAGTTAACTGTGATGCTTGA
TTGCTACCTAAGGATTTGTTTTGTTATGTCTGGAGTAAGACTTTTGAATC
AGGGATCGTCCCTTATAAATGAGGAAAAGTGTGCAAAATCCTACCATGAT
ACACTGGAATGATTGCATAACAATAATATTTA
back to top

Coding sequence (CDS) from alignment at Vu08:4052111..4052842+

>drVigUngu.IT97K.1.2.Vigun08g040600.1.v1.2 ID=drVigUngu.IT97K.1.2.Vigun08g040600.1.v1.2; Name=Vigun08g040600.1; organism=Vigna unguiculata; type=CDS; length=357bp; location=Sequence derived from: Vu08:4052111..4052842+ (Vigna unguiculata
ATGGTCTGTTTTAATTTCTTTTCTTTTTGTGATAACCATTATCAATTAAA
CTTTTTTTCTCGAAAGATGAAAAGCAAAAGCATATGTTTCTGCATCAGAG
GGCGCCACAGGAAGAGAAAGGAAAGCAAAGTGGAAGAGTTGGAGAAACAT
GTGAAGCCTAATTACAAGGTGAAAACCAAAGCAAGAGGTTTTGTTGGTGA
TGGTGGTGACAGCAATGTTGTTGATGGAGGCAGCATGGTTGGTAGCAATG
AAGCTGTGATGAGTGTAGCTCATATGTTATTGATGAGTGGCAATGAAGAT
GGATGTGGGAATGGGCATCTGGGGGAATCTGGGGCAGATGCTGCTGCTGC
TGACTGA
back to top