Ca_00796, Ca_00796_v1.0_kabuli (mRNA) Cicer arietinum

Transcript Overview
NameCa_00796
Unique NameCa_00796_v1.0_kabuli
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length183
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca3chromosomeCa3:35215038..35215307 +Cicer arietinum CDC Frontier genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
capsR198Pisum sativum Cameor genome v1aPisum sativum
capsR230Pisum sativum Cameor genome v1aPisum sativum
cavuR164Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
cavuR177Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
cavuR198Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
capvR193Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
capvR220Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
capvR233Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caccR0322Cajanus cajan Asha genome v1.0Cajanus cajan
caccR0346Cajanus cajan Asha genome v1.0Cajanus cajan
caccR0348Cajanus cajan Asha genome v1.0Cajanus cajan
ancaL0276Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0587Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0680Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0889Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0892Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0936Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL1112Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL1194Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaL115Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaL463Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaL635Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cavrvR192Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavrvR193Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavssR204Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavssR225Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavssR247Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavssR271Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavuaR155Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cavuaR169Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cavuaR189Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cacanR073Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cacanR081Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cacanR083Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cacanR098Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cacarR174Cicer arietinum
cacarR184Cicer arietinum
cacarR203Cicer arietinum
cacarR219Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
Psat3g033400.1Pisum sativum Cameor genome v1aPisum sativum
Vigun01g174000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Phvul.001G190200.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-TanjilR_28579Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
jg31752.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-TanjilR_19614Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-TanjilR_31136Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
evm.model.Chr01.1664Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
LR48_mrnaVigan03g242900Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-KK1_010366Cajanus cajan Asha genome v1.0Cajanus cajan
rna-XM_014640514.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-XM_004494119.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_00796-CDS1Ca_00796-CDS1Cicer arietinumCDS
Ca_00796-CDS2Ca_00796-CDS2Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_00796_v1.0_kabuliCa_00796_v1.0_kabuliCicer arietinumpolypeptide


Homology
BLAST of Ca_00796 vs. SwissProt
Match: QCR9_SOLTU (Cytochrome b-c1 complex subunit 9 OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.052e-19
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 1
Query:    1 MESAARRRGGGVLEGLYKVLMRRNSVYVTFIIAGAFLGERAVDYGVHKLWERNNVG 168
            MESAARR GGGVLEG Y+++MRR  VYVTF+IAGA LGERAVDYGV  LWE+NNVG
Sbjct:    1 MESAARRSGGGVLEGFYRLVMRRTPVYVTFVIAGALLGERAVDYGVKTLWEKNNVG 56          
BLAST of Ca_00796 vs. TrEMBL
Match: G7L638_MEDTR (Ubiquinol-cytochrome c reductase complex protein OS=Medicago truncatula GN=MTR_7g104570 PE=4 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.544e-22
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 1
Query:    1 MESAARRRGGGVLEGLYKVLMRRNSVYVTFIIAGAFLGERAVDYGVHKLWERNNVG 168
            MESAA+RRGGGVLEGLYKVLMRRNSVYVTF+IAGAFLGERAVDYGVHKLWE NNVG
Sbjct:    1 MESAAKRRGGGVLEGLYKVLMRRNSVYVTFVIAGAFLGERAVDYGVHKLWEINNVG 56          
BLAST of Ca_00796 vs. TrEMBL
Match: C6TBQ2_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.107e-20
Identity = 48/56 (85.71%), Postives = 52/56 (92.86%), Query Frame = 1
Query:    1 MESAARRRGGGVLEGLYKVLMRRNSVYVTFIIAGAFLGERAVDYGVHKLWERNNVG 168
            MES +RRRGGG+ E LYKV+MRRNSVYVTF+IAGAFLGERAVDYGVHKLWE NNVG
Sbjct:    1 MESVSRRRGGGIFESLYKVVMRRNSVYVTFVIAGAFLGERAVDYGVHKLWEANNVG 56          
BLAST of Ca_00796 vs. TrEMBL
Match: K7MZ88_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.465e-20
Identity = 47/56 (83.93%), Postives = 52/56 (92.86%), Query Frame = 1
Query:    1 MESAARRRGGGVLEGLYKVLMRRNSVYVTFIIAGAFLGERAVDYGVHKLWERNNVG 168
            ME+ +RRRGGG+ E LYKV+MRRNSVYVTF+IAGAFLGERAVDYGVHKLWE NNVG
Sbjct:    1 MEAVSRRRGGGIFESLYKVVMRRNSVYVTFVIAGAFLGERAVDYGVHKLWEANNVG 56          
BLAST of Ca_00796 vs. TrEMBL
Match: M5WB59_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014374mg PE=4 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 4.205e-20
Identity = 47/56 (83.93%), Postives = 52/56 (92.86%), Query Frame = 1
Query:    1 MESAARRRGGGVLEGLYKVLMRRNSVYVTFIIAGAFLGERAVDYGVHKLWERNNVG 168
            M SAARR GGG+ EG+Y+V+MRRNSVYVTF+IAGAFLGERAVDYGVHKLWE NNVG
Sbjct:    1 MNSAARRSGGGLFEGIYRVIMRRNSVYVTFVIAGAFLGERAVDYGVHKLWEYNNVG 56          
BLAST of Ca_00796 vs. TrEMBL
Match: C6SV79_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 7.172e-20
Identity = 46/56 (82.14%), Postives = 52/56 (92.86%), Query Frame = 1
Query:    1 MESAARRRGGGVLEGLYKVLMRRNSVYVTFIIAGAFLGERAVDYGVHKLWERNNVG 168
            ME+ +RRRGGG+ E LYKV+MRRNSVYVTF+IAGAFLGERAVDYGVH+LWE NNVG
Sbjct:    1 MEAVSRRRGGGIFESLYKVVMRRNSVYVTFVIAGAFLGERAVDYGVHELWEANNVG 56          
BLAST of Ca_00796 vs. TrEMBL
Match: C6TF09_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 9.367e-20
Identity = 46/56 (82.14%), Postives = 51/56 (91.07%), Query Frame = 1
Query:    1 MESAARRRGGGVLEGLYKVLMRRNSVYVTFIIAGAFLGERAVDYGVHKLWERNNVG 168
            ME+ +RRRGGG+ E LYKV+MRRNSVYVTF+IAGAFLGERAVDYGVHKLWE NN G
Sbjct:    1 MEAVSRRRGGGIFESLYKVVMRRNSVYVTFVIAGAFLGERAVDYGVHKLWEANNFG 56          
BLAST of Ca_00796 vs. TrEMBL
Match: K7LZZ5_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 3.560e-19
Identity = 49/57 (85.96%), Postives = 51/57 (89.47%), Query Frame = 1
Query:    1 MESAARR-RGGGVLEGLYKVLMRRNSVYVTFIIAGAFLGERAVDYGVHKLWERNNVG 168
            M+S  RR RGGGV E LYKVLMRRNSVYVTFIIAGAFLGERAVDYGVHK+WE NNVG
Sbjct:    1 MDSVPRRSRGGGVFESLYKVLMRRNSVYVTFIIAGAFLGERAVDYGVHKIWEHNNVG 57          
BLAST of Ca_00796 vs. TrEMBL
Match: L0P0V4_LUPAN (Similar to cytochrome b-c1 complex subunit 9-like OS=Lupinus angustifolius PE=4 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 4.649e-19
Identity = 46/53 (86.79%), Postives = 48/53 (90.57%), Query Frame = 1
Query:   10 AARRRGGGVLEGLYKVLMRRNSVYVTFIIAGAFLGERAVDYGVHKLWERNNVG 168
            A RR GGGV EGLYKVLMRRNSVYVTF+I GAF GERAVDYGVHK+WERNNVG
Sbjct:    5 AQRRGGGGVFEGLYKVLMRRNSVYVTFVIVGAFAGERAVDYGVHKIWERNNVG 57          
BLAST of Ca_00796 vs. TrEMBL
Match: D7TJ67_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g03350 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 4.649e-19
Identity = 45/56 (80.36%), Postives = 50/56 (89.29%), Query Frame = 1
Query:    1 MESAARRRGGGVLEGLYKVLMRRNSVYVTFIIAGAFLGERAVDYGVHKLWERNNVG 168
            M+S ARR GGG+LEGLY+V+MRR SVY TF+I GAF GERAVDYGVHKLWERNNVG
Sbjct:    1 MDSTARRSGGGLLEGLYRVIMRRTSVYATFVILGAFAGERAVDYGVHKLWERNNVG 56          
BLAST of Ca_00796 vs. TrEMBL
Match: A9P8V2_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_836670 PE=4 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.767e-18
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 1
Query:    1 MESAARRRGGGVLEGLYKVLMRRNSVYVTFIIAGAFLGERAVDYGVHKLWERNNVG 168
            M+  ARR GGGV EGLYK++MRRNS+YVTF+IAGAF GERAVDYGV KLWE NNVG
Sbjct:    1 MDYTARRNGGGVFEGLYKLIMRRNSIYVTFVIAGAFAGERAVDYGVRKLWEHNNVG 56          
BLAST of Ca_00796 vs. DB:Swiss
Match: QCR9_SOLTU (Cytochrome b-c1 complex subunit 9 OS=Solanum tuberosum OX=4113 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.580e-26
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 1
Query:    1 MESAARRRGGGVLEGLYKVLMRRNSVYVTFIIAGAFLGERAVDYGVHKLWERNNVG 168
            MESAARR GGGVLEG Y+++MRR  VYVTF+IAGA LGERAVDYGV  LWE+NNVG
Sbjct:    1 MESAARRSGGGVLEGFYRLVMRRTPVYVTFVIAGALLGERAVDYGVKTLWEKNNVG 56          
The following BLAST results are available for this feature:
BLAST of Ca_00796 vs. SwissProt
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
QCR9_SOLTU2.052e-1978.57Cytochrome b-c1 complex subunit 9 OS=Solanum tuber... [more]
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BLAST of Ca_00796 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
G7L638_MEDTR1.544e-2294.64Ubiquinol-cytochrome c reductase complex protein O... [more]
C6TBQ2_SOYBN1.107e-2085.71Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
K7MZ88_SOYBN2.465e-2083.93Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
M5WB59_PRUPE4.205e-2083.93Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
C6SV79_SOYBN7.172e-2082.14Putative uncharacterized protein OS=Glycine max PE... [more]
C6TF09_SOYBN9.367e-2082.14Putative uncharacterized protein OS=Glycine max PE... [more]
K7LZZ5_SOYBN3.560e-1985.96Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
L0P0V4_LUPAN4.649e-1986.79Similar to cytochrome b-c1 complex subunit 9-like ... [more]
D7TJ67_VITVI4.649e-1980.36Putative uncharacterized protein OS=Vitis vinifera... [more]
A9P8V2_POPTR1.767e-1878.57Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]

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BLAST of Ca_00796 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
QCR9_SOLTU2.580e-2678.57Cytochrome b-c1 complex subunit 9 OS=Solanum tuber... [more]
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Expression

Available Analyses

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Download expression dataset for this feature
InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008027Ubiquinol-cytochrome C reductase, UQCRX/QCR9-likeGENE3D1.20.5.260no descriptioncoord: 11..56
score: 6.9
IPR008027Ubiquinol-cytochrome C reductase, UQCRX/QCR9-likePANTHERPTHR12980FAMILY NOT NAMEDcoord: 11..56
score: 1.4
IPR008027Ubiquinol-cytochrome C reductase, UQCRX/QCR9-likePFAMPF05365UCR_UQCRX_QCR9coord: 14..56
score: 5.6
IPR008027Ubiquinol-cytochrome C reductase, UQCRX/QCR9-likeSUPERFAMILY81514Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)coord: 14..56
score: 9.1

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_00796_v1.0_kabuli ID=Ca_00796_v1.0_kabuli; Name=Ca_00796; organism=Cicer arietinum; type=mRNA; length=183bp
ATGGAATCCGCAGCTAGAAGAAGAGGAGGAGGCGTTTTAGAAGGCCTTTA
CAAGGTTCTTATGCGACGCAACTCTGTTTATGTTACCTTCATAATCGCTG
GTGCCTTTCTCGGAGAACGGGCTGTCGATTACGGAGTTCACAAGCTCTGG
GAACGCAATAATGTTGGGGTAATGAACCTATGA
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protein sequence of Ca_00796_v1.0_kabuli

>Ca_00796_v1.0_kabuli ID=Ca_00796_v1.0_kabuli; Name=Ca_00796_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=60bp
MESAARRRGGGVLEGLYKVLMRRNSVYVTFIIAGAFLGERAVDYGVHKLW
ERNNVGVMNL
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mRNA from alignment at Ca3:35215038..35215307+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_00796_v1.0_kabuli ID=Ca_00796_v1.0_kabuli; Name=Ca_00796; organism=Cicer arietinum; type=mRNA; length=270bp; location=Sequence derived from: Ca3:35215038..35215307+ (Cicer arietinum
ATGGAATCCGCAGCTAGAAGAAGAGGAGGAGGCGTTTTAGAAGGCCTTTA CAAGGTTCTTATGCGACGCAACTCTGTTTATGTTACCTTCATAATCGCTG GTGCCTTTCTCGGAGAACGGGTTTGTCAATTTTTTCCTTTCATTTTCCTT TTATTCAATTTTGTTTATTCTTTTTTGATTCTAGAAGATCCCTAAATTTT GTTGCAGGCTGTCGATTACGGAGTTCACAAGCTCTGGGAACGCAATAATG TTGGGGTAATGAACCTATGA
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Coding sequence (CDS) from alignment at Ca3:35215038..35215307+

>Ca_00796_v1.0_kabuli ID=Ca_00796_v1.0_kabuli; Name=Ca_00796; organism=Cicer arietinum; type=CDS; length=183bp; location=Sequence derived from: Ca3:35215038..35215307+ (Cicer arietinum
ATGGAATCCGCAGCTAGAAGAAGAGGAGGAGGCGTTTTAGAAGGCCTTTA
CAAGGTTCTTATGCGACGCAACTCTGTTTATGTTACCTTCATAATCGCTG
GTGCCTTTCTCGGAGAACGGGCTGTCGATTACGGAGTTCACAAGCTCTGG
GAACGCAATAATGTTGGGGTAATGAACCTATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: KEGG ORTHOLOGY
TermDefinition
K00419QCR9, UCRC; ubiquinol-cytochrome c reductase subunit 9
Vocabulary: KEGG PATHWAY
TermDefinition
ko00190Oxidative phosphorylation
ko04260Cardiac muscle contraction
ko05010Alzheimer's disease
ko04940Type I diabetes mellitus
Vocabulary: INTERPRO
TermDefinition
IPR008027QCR9
Vocabulary: Cellular Component
TermDefinition
GO:0005740mitochondrial envelope
Vocabulary: Molecular Function
TermDefinition
GO:0008121ubiquinol-cytochrome-c reductase activity