Ca_00796, Ca_00796_v1.0_kabuli (mRNA) Cicer arietinum
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Ca_00796 vs. SwissProt
Match: QCR9_SOLTU (Cytochrome b-c1 complex subunit 9 OS=Solanum tuberosum PE=1 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 2.052e-19 Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 1 Query: 1 MESAARRRGGGVLEGLYKVLMRRNSVYVTFIIAGAFLGERAVDYGVHKLWERNNVG 168 MESAARR GGGVLEG Y+++MRR VYVTF+IAGA LGERAVDYGV LWE+NNVG Sbjct: 1 MESAARRSGGGVLEGFYRLVMRRTPVYVTFVIAGALLGERAVDYGVKTLWEKNNVG 56
BLAST of Ca_00796 vs. TrEMBL
Match: G7L638_MEDTR (Ubiquinol-cytochrome c reductase complex protein OS=Medicago truncatula GN=MTR_7g104570 PE=4 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 1.544e-22 Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 1 Query: 1 MESAARRRGGGVLEGLYKVLMRRNSVYVTFIIAGAFLGERAVDYGVHKLWERNNVG 168 MESAA+RRGGGVLEGLYKVLMRRNSVYVTF+IAGAFLGERAVDYGVHKLWE NNVG Sbjct: 1 MESAAKRRGGGVLEGLYKVLMRRNSVYVTFVIAGAFLGERAVDYGVHKLWEINNVG 56
BLAST of Ca_00796 vs. TrEMBL
Match: C6TBQ2_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 1.107e-20 Identity = 48/56 (85.71%), Postives = 52/56 (92.86%), Query Frame = 1 Query: 1 MESAARRRGGGVLEGLYKVLMRRNSVYVTFIIAGAFLGERAVDYGVHKLWERNNVG 168 MES +RRRGGG+ E LYKV+MRRNSVYVTF+IAGAFLGERAVDYGVHKLWE NNVG Sbjct: 1 MESVSRRRGGGIFESLYKVVMRRNSVYVTFVIAGAFLGERAVDYGVHKLWEANNVG 56
BLAST of Ca_00796 vs. TrEMBL
Match: K7MZ88_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 2.465e-20 Identity = 47/56 (83.93%), Postives = 52/56 (92.86%), Query Frame = 1 Query: 1 MESAARRRGGGVLEGLYKVLMRRNSVYVTFIIAGAFLGERAVDYGVHKLWERNNVG 168 ME+ +RRRGGG+ E LYKV+MRRNSVYVTF+IAGAFLGERAVDYGVHKLWE NNVG Sbjct: 1 MEAVSRRRGGGIFESLYKVVMRRNSVYVTFVIAGAFLGERAVDYGVHKLWEANNVG 56
BLAST of Ca_00796 vs. TrEMBL
Match: M5WB59_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014374mg PE=4 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 4.205e-20 Identity = 47/56 (83.93%), Postives = 52/56 (92.86%), Query Frame = 1 Query: 1 MESAARRRGGGVLEGLYKVLMRRNSVYVTFIIAGAFLGERAVDYGVHKLWERNNVG 168 M SAARR GGG+ EG+Y+V+MRRNSVYVTF+IAGAFLGERAVDYGVHKLWE NNVG Sbjct: 1 MNSAARRSGGGLFEGIYRVIMRRNSVYVTFVIAGAFLGERAVDYGVHKLWEYNNVG 56
BLAST of Ca_00796 vs. TrEMBL
Match: C6SV79_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 7.172e-20 Identity = 46/56 (82.14%), Postives = 52/56 (92.86%), Query Frame = 1 Query: 1 MESAARRRGGGVLEGLYKVLMRRNSVYVTFIIAGAFLGERAVDYGVHKLWERNNVG 168 ME+ +RRRGGG+ E LYKV+MRRNSVYVTF+IAGAFLGERAVDYGVH+LWE NNVG Sbjct: 1 MEAVSRRRGGGIFESLYKVVMRRNSVYVTFVIAGAFLGERAVDYGVHELWEANNVG 56
BLAST of Ca_00796 vs. TrEMBL
Match: C6TF09_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 9.367e-20 Identity = 46/56 (82.14%), Postives = 51/56 (91.07%), Query Frame = 1 Query: 1 MESAARRRGGGVLEGLYKVLMRRNSVYVTFIIAGAFLGERAVDYGVHKLWERNNVG 168 ME+ +RRRGGG+ E LYKV+MRRNSVYVTF+IAGAFLGERAVDYGVHKLWE NN G Sbjct: 1 MEAVSRRRGGGIFESLYKVVMRRNSVYVTFVIAGAFLGERAVDYGVHKLWEANNFG 56
BLAST of Ca_00796 vs. TrEMBL
Match: K7LZZ5_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 3.560e-19 Identity = 49/57 (85.96%), Postives = 51/57 (89.47%), Query Frame = 1 Query: 1 MESAARR-RGGGVLEGLYKVLMRRNSVYVTFIIAGAFLGERAVDYGVHKLWERNNVG 168 M+S RR RGGGV E LYKVLMRRNSVYVTFIIAGAFLGERAVDYGVHK+WE NNVG Sbjct: 1 MDSVPRRSRGGGVFESLYKVLMRRNSVYVTFIIAGAFLGERAVDYGVHKIWEHNNVG 57
BLAST of Ca_00796 vs. TrEMBL
Match: L0P0V4_LUPAN (Similar to cytochrome b-c1 complex subunit 9-like OS=Lupinus angustifolius PE=4 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 4.649e-19 Identity = 46/53 (86.79%), Postives = 48/53 (90.57%), Query Frame = 1 Query: 10 AARRRGGGVLEGLYKVLMRRNSVYVTFIIAGAFLGERAVDYGVHKLWERNNVG 168 A RR GGGV EGLYKVLMRRNSVYVTF+I GAF GERAVDYGVHK+WERNNVG Sbjct: 5 AQRRGGGGVFEGLYKVLMRRNSVYVTFVIVGAFAGERAVDYGVHKIWERNNVG 57
BLAST of Ca_00796 vs. TrEMBL
Match: D7TJ67_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g03350 PE=2 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 4.649e-19 Identity = 45/56 (80.36%), Postives = 50/56 (89.29%), Query Frame = 1 Query: 1 MESAARRRGGGVLEGLYKVLMRRNSVYVTFIIAGAFLGERAVDYGVHKLWERNNVG 168 M+S ARR GGG+LEGLY+V+MRR SVY TF+I GAF GERAVDYGVHKLWERNNVG Sbjct: 1 MDSTARRSGGGLLEGLYRVIMRRTSVYATFVILGAFAGERAVDYGVHKLWERNNVG 56
BLAST of Ca_00796 vs. TrEMBL
Match: A9P8V2_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_836670 PE=4 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 1.767e-18 Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 1 Query: 1 MESAARRRGGGVLEGLYKVLMRRNSVYVTFIIAGAFLGERAVDYGVHKLWERNNVG 168 M+ ARR GGGV EGLYK++MRRNS+YVTF+IAGAF GERAVDYGV KLWE NNVG Sbjct: 1 MDYTARRNGGGVFEGLYKLIMRRNSIYVTFVIAGAFAGERAVDYGVRKLWEHNNVG 56
BLAST of Ca_00796 vs. DB:Swiss
Match: QCR9_SOLTU (Cytochrome b-c1 complex subunit 9 OS=Solanum tuberosum OX=4113 PE=1 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 2.580e-26 Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 1 Query: 1 MESAARRRGGGVLEGLYKVLMRRNSVYVTFIIAGAFLGERAVDYGVHKLWERNNVG 168 MESAARR GGGVLEG Y+++MRR VYVTF+IAGA LGERAVDYGV LWE+NNVG Sbjct: 1 MESAARRSGGGVLEGFYRLVMRRTPVYVTFVIAGALLGERAVDYGVKTLWEKNNVG 56 The following BLAST results are available for this feature:
BLAST of Ca_00796 vs. SwissProt
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs Swissprot) Total hits: 1
BLAST of Ca_00796 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL) Total hits: 25
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BLAST of Ca_00796 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot) Total hits: 1
Expression
Available Analyses Select an Expression Analysis Select a property to group and sort biological samples Select a property to color biological samples Hover the mouse over a column in the graph to view more information about that biological sample. You can click and drag to rearrange groups along the x-axis. You can also click and drag to move the legend. InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
Sequences
The
following sequences are available for this feature:
mRNA sequence >Ca_00796_v1.0_kabuli ID=Ca_00796_v1.0_kabuli; Name=Ca_00796; organism=Cicer arietinum; type=mRNA; length=183bpback to top protein sequence of Ca_00796_v1.0_kabuli >Ca_00796_v1.0_kabuli ID=Ca_00796_v1.0_kabuli; Name=Ca_00796_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=60bpback to top mRNA from alignment at Ca3:35215038..35215307+ Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.>Ca_00796_v1.0_kabuli ID=Ca_00796_v1.0_kabuli; Name=Ca_00796; organism=Cicer arietinum; type=mRNA; length=270bp; location=Sequence derived from: Ca3:35215038..35215307+ (Cicer arietinumback to top Coding sequence (CDS) from alignment at Ca3:35215038..35215307+ >Ca_00796_v1.0_kabuli ID=Ca_00796_v1.0_kabuli; Name=Ca_00796; organism=Cicer arietinum; type=CDS; length=183bp; location=Sequence derived from: Ca3:35215038..35215307+ (Cicer arietinumback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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