Ca_00833, Ca_00833_v1.0_kabuli (mRNA) Cicer arietinum
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Ca_00833 vs. TrEMBL
Match: G7ZUW8_MEDTR (Putative uncharacterized protein OS=Medicago truncatula GN=MTR_013s0011 PE=4 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 7.838e-27 Identity = 61/85 (71.76%), Postives = 64/85 (75.29%), Query Frame = 1 Query: 1 MSRRNGSGPKLDLKLNLSPPRVDRRMEXXXXXXXXXXXXXXXXXXENDPNSPEPTSMVLVGCPRCLMYVMLSENDPKCPKCHSTV 255 MSRRNGSGPKLDLKLNLSPPRV+RRME EN +SPE TSM+LVGCPRCLMYVMLSENDPKCPKCHSTV Sbjct: 1 MSRRNGSGPKLDLKLNLSPPRVNRRMESSPTRSASVSPPSSCVSSENGSSSPEATSMLLVGCPRCLMYVMLSENDPKCPKCHSTV 85
BLAST of Ca_00833 vs. TrEMBL
Match: B7FH31_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=4 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 7.838e-27 Identity = 61/85 (71.76%), Postives = 64/85 (75.29%), Query Frame = 1 Query: 1 MSRRNGSGPKLDLKLNLSPPRVDRRMEXXXXXXXXXXXXXXXXXXENDPNSPEPTSMVLVGCPRCLMYVMLSENDPKCPKCHSTV 255 MSRRNGSGPKLDLKLNLSPPRV+RRME EN +SPE TSM+LVGCPRCLMYVMLSENDPKCPKCHSTV Sbjct: 1 MSRRNGSGPKLDLKLNLSPPRVNRRMESSPTRSASVSPPSSCVSSENGSSSPEATSMLLVGCPRCLMYVMLSENDPKCPKCHSTV 85
BLAST of Ca_00833 vs. TrEMBL
Match: I1NAS1_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 5.813e-22 Identity = 57/93 (61.29%), Postives = 61/93 (65.59%), Query Frame = 1 Query: 1 MSRRNGSGPKLDLKLNLSPPRVDRRMEXXXXXXXXXXXXXXXXXXEND--------PNSPEPTSMVLVGCPRCLMYVMLSENDPKCPKCHSTV 255 MSRRN SGPKLDLKLNLSPPR DRR+E ++ NSPE TSMVLVGCPRCLMYVMLSE+DPKCPKC STV Sbjct: 1 MSRRNESGPKLDLKLNLSPPRADRRLESPTRSATASPTSPPSSCVSSELNQEDKSYSNSPEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTV 93
BLAST of Ca_00833 vs. TrEMBL
Match: I1JQ64_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 1.295e-21 Identity = 56/93 (60.22%), Postives = 61/93 (65.59%), Query Frame = 1 Query: 1 MSRRNGSGPKLDLKLNLSPPRVDRRMEXXXXXXXXXXXXXXXXXXEND--------PNSPEPTSMVLVGCPRCLMYVMLSENDPKCPKCHSTV 255 MSRRN SGPKLDLKLNLSPPR DRR++ ++ NSPE TSMVLVGCPRCLMYVMLSE+DPKCPKC STV Sbjct: 1 MSRRNESGPKLDLKLNLSPPRADRRLDSPTRSATASPTSPPSSCVSSELNQEDKSYSNSPEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTV 93
BLAST of Ca_00833 vs. TrEMBL
Match: B9SVZ7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0225950 PE=4 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 1.691e-21 Identity = 56/94 (59.57%), Postives = 61/94 (64.89%), Query Frame = 1 Query: 1 MSRRNGSGPKLDLKLNLSPPRVDRRMEXXXXXXXXXXXXXXXXXXEND---------PNSPEPTSMVLVGCPRCLMYVMLSENDPKCPKCHSTV 255 MSRRNG+GPKLDLKLNLSPPR D R+E ++ NSPE TSMVLVGCPRCLMYVMLSE+DPKCPKC STV Sbjct: 87 MSRRNGNGPKLDLKLNLSPPRADPRVESPNRSATVSPTSPPSSCVSSELNQDDTLRYSNSPEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTV 180
BLAST of Ca_00833 vs. TrEMBL
Match: B9HBR6_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_416064 PE=4 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 1.432e-20 Identity = 56/94 (59.57%), Postives = 61/94 (64.89%), Query Frame = 1 Query: 1 MSRRNGSGPKLDLKLNLSPPRVDRRMEXXXXXXXXXXXXXXXXXXEND---------PNSPEPTSMVLVGCPRCLMYVMLSENDPKCPKCHSTV 255 MSRRNGS PKLDLKLNLSPPRV+ R+E ++ +SPE TSMVLVGCPRCLMYVMLSENDPKCPKC STV Sbjct: 1 MSRRNGSLPKLDLKLNLSPPRVNPRVESPGRSATVSPTSPPSSCVSSERSHDDALRYSSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSTV 94
BLAST of Ca_00833 vs. TrEMBL
Match: B9IIP8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1103583 PE=4 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 4.166e-20 Identity = 55/93 (59.14%), Postives = 60/93 (64.52%), Query Frame = 1 Query: 1 MSRRNGSGPKLDLKLNLSPPRVDRRMEXXXXXXXXXXXXXXXXXXEND---------PNSPEPTSMVLVGCPRCLMYVMLSENDPKCPKCHST 252 MSRRNGS PKLDLKLNLSPPRV+ R+E ++ +SPE TSMVLVGCPRCLMYVMLSENDPKCPKC ST Sbjct: 1 MSRRNGSLPKLDLKLNLSPPRVNPRVESPGRSATVSPTSPPSSCVSSEMSQDDTLRYSSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKST 93
BLAST of Ca_00833 vs. TrEMBL
Match: F6HKQ3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g02600 PE=4 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 1.340e-18 Identity = 54/94 (57.45%), Postives = 58/94 (61.70%), Query Frame = 1 Query: 1 MSRRNGSGPKLDLKLNLSPPRVDRRMEXXXXXXXXXXXXXXXXXXEND---------PNSPEPTSMVLVGCPRCLMYVMLSENDPKCPKCHSTV 255 MSRRNG PKLDLKLNLSPPR +R E ++ NSPE TSMVLVGCPRCLMYVMLSE+DPKCPKC STV Sbjct: 99 MSRRNG--PKLDLKLNLSPPRANRHAESPSRSATLSPTSPPSSCVSSELNQDETLRYSNSPEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTV 190
BLAST of Ca_00833 vs. TrEMBL
Match: A5BPL0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012166 PE=4 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 1.340e-18 Identity = 54/94 (57.45%), Postives = 58/94 (61.70%), Query Frame = 1 Query: 1 MSRRNGSGPKLDLKLNLSPPRVDRRMEXXXXXXXXXXXXXXXXXXEND---------PNSPEPTSMVLVGCPRCLMYVMLSENDPKCPKCHSTV 255 MSRRNG PKLDLKLNLSPPR +R E ++ NSPE TSMVLVGCPRCLMYVMLSE+DPKCPKC STV Sbjct: 162 MSRRNG--PKLDLKLNLSPPRANRHAESPSRSATLSPTSPPSSCVSSELNQDETLRYSNSPEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTV 253
BLAST of Ca_00833 vs. TrEMBL
Match: M5VWB7_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019371mg PE=4 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 2.286e-18 Identity = 57/99 (57.58%), Postives = 60/99 (60.61%), Query Frame = 1 Query: 1 MSRRNGSGPKLDLKLNLSPPRVD---------RRMEXXXXXXXXXXXXXXXXXXEND---PNSPEP--TSMVLVGCPRCLMYVMLSENDPKCPKCHSTV 255 MSRRNGSGPKLDLKLNLSPPR RR E++ NSPE TSMVLVGCPRCLMYVMLSE+DPKCPKC STV Sbjct: 11 MSRRNGSGPKLDLKLNLSPPRASNNNPLLQSPRRSATVSPTSPPSSCVSSELNQEDNFRYSNSPEAEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTV 109 The following BLAST results are available for this feature:
BLAST of Ca_00833 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL) Total hits: 25
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BLAST of Ca_00833 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
Sequences
The
following sequences are available for this feature:
mRNA sequence >Ca_00833_v1.0_kabuli ID=Ca_00833_v1.0_kabuli; Name=Ca_00833; organism=Cicer arietinum; type=mRNA; length=309bpback to top protein sequence of Ca_00833_v1.0_kabuli >Ca_00833_v1.0_kabuli ID=Ca_00833_v1.0_kabuli; Name=Ca_00833_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=102bpback to top mRNA from alignment at Ca3:35508163..35508471+ Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.>Ca_00833_v1.0_kabuli ID=Ca_00833_v1.0_kabuli; Name=Ca_00833; organism=Cicer arietinum; type=mRNA; length=309bp; location=Sequence derived from: Ca3:35508163..35508471+ (Cicer arietinumback to top Coding sequence (CDS) from alignment at Ca3:35508163..35508471+ >Ca_00833_v1.0_kabuli ID=Ca_00833_v1.0_kabuli; Name=Ca_00833; organism=Cicer arietinum; type=CDS; length=309bp; location=Sequence derived from: Ca3:35508163..35508471+ (Cicer arietinumback to top |