Ca_06129, Ca_06129_v1.0_kabuli (mRNA) Cicer arietinum
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Ca_06129 vs. SwissProt
Match: RIC4_ARATH (CRIB domain-containing protein RIC4 OS=Arabidopsis thaliana GN=RIC4 PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 4.794e-18 Identity = 64/151 (42.38%), Postives = 79/151 (52.32%), Query Frame = 1 Query: 1 MRQRMERLVILPFSAGCISEASVAVGVPQPRRSKQDTNSLHDAIKGSKGVEDSEILSGESMKNSLRLLDVVPKP----SFNKLFKGFKNFSQLF-XXXXXXXXXXXXXXXIGCPTNVQHVTHIGWDGITTCATHHDPIRGWDTLIAPNLLS 438 MR RMERLV+LPFS GCIS +SVAV P SK + I+ E ++MKN + L V KP N++FK FK SQLF IG PTNV+HV+HIGW+ T AT P +GW+ LI P LL+ Sbjct: 1 MRDRMERLVVLPFSIGCISVSSVAVLSP---LSKPHHHHSRQVIR--------EQEEEDNMKNVFKFL-AVSKPEISIGINRIFKSFKTISQLFADKDEEKEEVETSGMEIGVPTNVKHVSHIGWESGLTAAT--GPGKGWEDLIPPELLA 137
BLAST of Ca_06129 vs. TrEMBL
Match: Q2HW10_MEDTR (Wiscott-Aldrich syndrome, C-terminal OS=Medicago truncatula GN=MTR_7g079870 PE=4 SV=1) HSP 1 Score: 237.654 bits (605), Expect = 1.085e-60 Identity = 128/172 (74.42%), Postives = 135/172 (78.49%), Query Frame = 1 Query: 1 MRQRMERLVILPFSAGCISEASVAVGVPQPRRSKQ-DTNSLHDAIKGSKGVEDSEILSGESMKNSLRLLDVVPKP--SFNKLFKGFKNFSQLFXXXXXXXXXXXXXXXIGCPTNVQHVTHIGWDGITTCATHHDPIRGWDTLIAPNLLS--QSLLHPKHQTSSP--IMPSTA 495 MRQRMERLVILPFSAGCISEASVAVGVP PRRSK +TNS HDAIKGSKGVEDSEILSGESMKNSLRLLDVVPKP SFNKLFKGFKNFSQLF IGCPT+VQHVTHIGWDG+TT HDP+RGWD+LI P LLS L KH+T+SP IMPS A Sbjct: 1 MRQRMERLVILPFSAGCISEASVAVGVPHPRRSKPAETNSPHDAIKGSKGVEDSEILSGESMKNSLRLLDVVPKPNLSFNKLFKGFKNFSQLFVEKEEDLEEAEMDMEIGCPTDVQHVTHIGWDGVTTSCAAHDPMRGWDSLIPPELLSVASQSLQTKHETTSPINIMPSIA 172
BLAST of Ca_06129 vs. TrEMBL
Match: I1N3Y7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2) HSP 1 Score: 201.06 bits (510), Expect = 1.126e-49 Identity = 117/179 (65.36%), Postives = 126/179 (70.39%), Query Frame = 1 Query: 1 MRQRMERLVILPFSAGCISEASVAVGVPQPRRSKQDTNSLHDAIKGSKGVEDSEILSGESMKNSLRLLDVVPKPS----FNKLFKGFKNFSQLFXXXXXXXXXXXXXXXIGCPTNVQHVTHIGWDGITTCATHHDPIRGWDTLIAPNLL----SQSLLH-------PKH-QTSSPIMPS 489 MRQRM+RLVILPFSAGCISEASVAVGVP PRRSK DTN+ IK SK VEDSEILSGESMKNSLRLLDVVPK + FN+L KGFKNFSQLF IGCPT+VQHVTHIGWDGI T A DP++GWD LI P LL SQSL H KH + SSP+ PS Sbjct: 1 MRQRMDRLVILPFSAGCISEASVAVGVPHPRRSKPDTNASPPTIKRSKSVEDSEILSGESMKNSLRLLDVVPKSNLSYGFNRLVKGFKNFSQLF-VEKDEFEEVEIDMEIGCPTDVQHVTHIGWDGIATSAA--DPMKGWDALIPPELLSLSSSQSLKHLDLPNLEAKHDEASSPVKPS 176
BLAST of Ca_06129 vs. TrEMBL
Match: C6T067_SOYBN (Uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 1.521e-46 Identity = 111/160 (69.38%), Postives = 116/160 (72.50%), Query Frame = 1 Query: 1 MRQRMERLVILPFSAGCISEASVAVGVPQPRRSKQDTNSLHDAIKGSKGVEDSEILSGESMKNSLRLLDVVPKPS----FNKLFKGFKNFSQLFXXXXXXXXXXXXXXXIGCPTNVQHVTHIGWDGITTCATHHDPI-RGWDTLIAPNLL----SQSLLH 453 MRQRMERLVILPFSAGCISEASVAVGVP PRRSK DTN+ IK SK VEDSEILSGESMKNSLRLLDVVPKP+ FN+L KGFKN SQLF IGCPT+VQHVTHIGWDGI T A DPI +GWD LI LL SQSL H Sbjct: 1 MRQRMERLVILPFSAGCISEASVAVGVPYPRRSKPDTNAPPPTIKRSKSVEDSEILSGESMKNSLRLLDVVPKPNLSNGFNRLVKGFKNISQLF-VEKDEFEEVEIDMEIGCPTDVQHVTHIGWDGIATSAA--DPIMKGWDALIPHELLSLSSSQSLQH 157
BLAST of Ca_06129 vs. TrEMBL
Match: I1NIJ2_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 1.805e-31 Identity = 87/164 (53.05%), Postives = 97/164 (59.15%), Query Frame = 1 Query: 1 MRQRMERLVILPFSAGCISEASVAVGVPQPRRSKQDTNSLHDAIKGSKGVED-SEILSGESMKNSLRLLDVVPKP----SFNKLFKGFKNFSQLFXXXXXXXXXXXXXXXIGCPTNVQHVTHIGWDGITTCATHHDPIRGWDTLIAP-NLLSQSLLHPKHQTSS 474 M RMERLVILPFS GC+SEAS+ VG P PRRS+ DT+S A KG KG +D SE LSGESM+N LR + V K SFN+L KGFKN QLF IGCPTNVQHVTHIGWDG T + D+L P S L PK TSS Sbjct: 1 MGDRMERLVILPFSFGCVSEASIVVGSPHPRRSRSDTDSPTAATKGPKGDKDISESLSGESMRNLLRFHEDVQKSKTFLSFNRLLKGFKNIPQLFVNKEEELEEVEMDMEIGCPTNVQHVTHIGWDGFAATET----VTSSDSLRLPLQHCEFSNLKPKPGTSS 160
BLAST of Ca_06129 vs. TrEMBL
Match: M5W1D2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014687mg PE=4 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 4.022e-31 Identity = 83/157 (52.87%), Postives = 104/157 (66.24%), Query Frame = 1 Query: 1 MRQRMERLVILPFSAGCISEASVAVGVPQPRRSKQDT--NSLHDAIKGSKGVEDSEILSGESMKNSLRLLDVVPKPS-----FNKLFKGFKNFSQLF-XXXXXXXXXXXXXXXIGCPTNVQHVTHIGWDGITTCAT-HHDPIRGWDTLIAPNLLSQS 444 MR+RMERLV+LPF+ GC+SE+SVAVGV PRRSK DT + + G + E+ + LSGES KNS R L +PKP+ ++LFKGFKNFSQ+F IG PT+V+HVTHIGWDG + A+ DPIRGWD LI+P+LLS S Sbjct: 1 MRERMERLVLLPFTFGCVSESSVAVGVQPPRRSKSDTIPSPIRTKEVGDE-EEEEDSLSGESTKNSFRSLS-LPKPNISTSGIHRLFKGFKNFSQIFVYKDDDMEEIMEMDMEIGGPTDVKHVTHIGWDGSASAASATTDPIRGWDNLISPDLLSVS 155
BLAST of Ca_06129 vs. TrEMBL
Match: D7SPR4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g00400 PE=4 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 3.187e-28 Identity = 80/146 (54.79%), Postives = 94/146 (64.38%), Query Frame = 1 Query: 13 MERLVILPFSAGCISEASVAVGVPQPRRSKQDTNSLHDAIKGSKGVEDSEILSGESMKNSLRLLDVVPKPS----FNKLFKGFKNFSQLFXXXXXXXXXXXXXXXIGCPTNVQHVTHIGWDGITTCATHHDPIRGWDTLIAPNLLS 438 MERLV+LPF+AGC+S ASVAV QPRRSK DTNS I+ + ED E S +SMKNS RLL +PKP+ F++L KGFKNFSQ F IG PT+V+HVTHIGWDG T +PI+GWD LI P LLS Sbjct: 1 MERLVVLPFTAGCVSYASVAVSEQQPRRSKPDTNS--STIRAQE--EDQESFS-DSMKNSFRLL-ALPKPNISTGFHRLVKGFKNFSQFF-VPKEDMEDSDEEMQIGFPTDVKHVTHIGWDGSATT----NPIKGWDNLIPPELLS 135
BLAST of Ca_06129 vs. TrEMBL
Match: B9N155_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_827529 PE=4 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 4.602e-27 Identity = 74/149 (49.66%), Postives = 93/149 (62.42%), Query Frame = 1 Query: 1 MRQRMERLVILPFSAGCISEASVAVGVPQPRRSKQDTNSLHDAIKGSKGVEDSEILSGESMKNSLRLLDVVPKPS----FNKLFKGFKNFSQLFXXXXXXXXXXXXXXXIGCPTNVQHVTHIGWDGITTCATHHDPIRGWDTLIAPNLL 435 MR RMERLV+LPFS GC+SE+SVA+GV QPRR+K DTN + +K ++ S ESMK SL+ L + KP+ ++L KGFKNFSQLF IG PT+V+HVTHIGWD A +P+ GWD LI+P LL Sbjct: 1 MRDRMERLVLLPFSFGCVSESSVAIGVHQPRRAKTDTNL---SATRTKEEDEESSSSAESMKTSLKFL-ALSKPNISTGLHRLIKGFKNFSQLF-AYKEEIEEFEMEMEIGLPTDVKHVTHIGWD---ASAPTTNPVHGWDNLISPELL 141
BLAST of Ca_06129 vs. TrEMBL
Match: A9P8G4_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_826183 PE=2 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 5.088e-26 Identity = 75/152 (49.34%), Postives = 95/152 (62.50%), Query Frame = 1 Query: 1 MRQRMERLVILPFSAGCISEASVAVGVPQPRRSKQDTNSLHDAIKGSKGVEDSEILSG--ESMKNSLRLLDVVPKPS----FNKLFKGFKNFSQLFXXXXXXXXXXXXXXXIGCPTNVQHVTHIGWDGITTCATHHDPIRGWDTLIAPNLLS 438 MR RMERLV+LPFS GC+SE+SVA+GV Q +R+K DTN + S+ E+ E S ES KNSL+LL + KP+ FNKL KG K F QLF IG PTNV+HVTHIGWD + + +P++GWD LI+ +LLS Sbjct: 1 MRDRMERLVLLPFSIGCVSESSVAIGVHQTKRAKTDTN-----LSASRTQEEDEESSSSTESTKNSLKLL-ALSKPNVSTGFNKLVKGLKTFPQLF-AYKEEMEELEVEMEIGLPTNVKHVTHIGWDD----SPNTNPVQGWDNLISTDLLS 141
BLAST of Ca_06129 vs. TrEMBL
Match: B9RM87_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1078570 PE=4 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 9.595e-25 Identity = 69/152 (45.39%), Postives = 96/152 (63.16%), Query Frame = 1 Query: 1 MRQRMERLVILPFSAGCISEASVAVG--VPQPRRSKQDTNSLHDAIKGSKGVEDSEILSGESMKNSLRLLDVVPKPS----FNKLFKGFKNFSQLFXXXXXXXXXXXXXXXIGCPTNVQHVTHIGWDGITTCATHHDPIRGWDTLIAPNLLS 438 MR RMERLV+LPFS GC+SE+SVA+G V PR SK +S I +K ++ + S ESMKN++++ + KP+ F+++ KGFK FSQLF IG PT+V+HVTHIGWDG + + +PI+GW+ LI+P LL+ Sbjct: 1 MRDRMERLVLLPFSIGCVSESSVAIGHHVHHPRGSKPPPDSNPSPIIRTKEEDEESLSSTESMKNAMKVF-ALSKPNISNRFHRIVKGFKTFSQLF---VYEEEIEELEMEIGLPTDVKHVTHIGWDG----SANTNPIQGWENLISPELLT 144
BLAST of Ca_06129 vs. TrEMBL
Match: B9GUA0_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_552841 PE=4 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 1.753e-18 Identity = 60/160 (37.50%), Postives = 87/160 (54.37%), Query Frame = 1 Query: 1 MRQRMERLVILPFSAGCISEASVAVGVPQP--RRSKQDTNSLHDAIKGSKGVEDSEILSGESMKNSLRLLDVVPKPSFN----KLFKGFKNFSQLFXXXXXXXXXXXXXXXIGCPTNVQHVTHIGWDGITTCATHHDPIRGWDTLIAPNLLSQSLLHPKH 462 MR R ER V+LPFS GC S++SVAV ++ K +T S H A + +G E S E K++ +PKP+ + KL +G K+ SQ+F IG PT+V+H+THIG DG TT T +PI+GW++L P ++S + +H Sbjct: 1 MRDRKERFVVLPFSIGCASQSSVAVATAAEPCKKPKHETKSSH-ATRRREGEESS---CQEKTKSNTFSSLALPKPNMSSGMYKLVRGIKSLSQIFVYKEDDDDRMEREMEIGYPTDVKHLTHIGLDGSTTTTTATNPIKGWESLKPPEIISFPSISLRH 156
BLAST of Ca_06129 vs. DB:Swiss
Match: RIC4_ARATH (CRIB domain-containing protein RIC4 OS=Arabidopsis thaliana OX=3702 GN=RIC4 PE=1 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.418e-24 Identity = 70/153 (45.75%), Postives = 91/153 (59.48%), Query Frame = 1 Query: 1 MRQRMERLVILPFSAGCISEASVAVGVPQPRRSKQDTNSLHDAIKGSKGVEDSEILSGESMKNSLRLLDVVPKPS----FNKLFKGFKNFSQLFXXXXXXXXXXXXX-XXIGCPTNVQHVTHIGWDGITTCATHHDPIRGWDTLIAPNLLSQS 444 MR RMERLV+LPFS GCIS +SVAV P + + + + + E ++MKN + L V KP N++FK FK SQLF +K+EE EEVE MEIG PTNV+HV+HIGW+ T AT P +GW+ LI P LL+ + Sbjct: 1 MRDRMERLVVLPFSIGCISVSSVAVLSPLSKPHHHHSRQV---------IREQE--EEDNMKNVFKFL-AVSKPEISIGINRIFKSFKTISQLFADKDEEKEEVETSGMEIGVPTNVKHVSHIGWESGLTAAT--GPGKGWEDLIPPELLAAA 139 The following BLAST results are available for this feature:
BLAST of Ca_06129 vs. SwissProt
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs Swissprot) Total hits: 1
BLAST of Ca_06129 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL) Total hits: 25
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BLAST of Ca_06129 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot) Total hits: 1
Expression
Available Analyses Select an Expression Analysis Select a property to group and sort biological samples Select a property to color biological samples Hover the mouse over a column in the graph to view more information about that biological sample. You can click and drag to rearrange groups along the x-axis. You can also click and drag to move the legend. InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
Sequences
The
following sequences are available for this feature:
mRNA sequence >Ca_06129_v1.0_kabuli ID=Ca_06129_v1.0_kabuli; Name=Ca_06129; organism=Cicer arietinum; type=mRNA; length=498bpback to top protein sequence of Ca_06129_v1.0_kabuli >Ca_06129_v1.0_kabuli ID=Ca_06129_v1.0_kabuli; Name=Ca_06129_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=165bpback to top mRNA from alignment at Ca3:23927681..23929551+ Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.>Ca_06129_v1.0_kabuli ID=Ca_06129_v1.0_kabuli; Name=Ca_06129; organism=Cicer arietinum; type=mRNA; length=1871bp; location=Sequence derived from: Ca3:23927681..23929551+ (Cicer arietinumback to top Coding sequence (CDS) from alignment at Ca3:23927681..23929551+ >Ca_06129_v1.0_kabuli ID=Ca_06129_v1.0_kabuli; Name=Ca_06129; organism=Cicer arietinum; type=CDS; length=498bp; location=Sequence derived from: Ca3:23927681..23929551+ (Cicer arietinumback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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