Ca_08219, Ca_08219_v1.0_kabuli (mRNA) Cicer arietinum
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Ca_08219 vs. TrEMBL
Match: G7L0H2_MEDTR (15.4 kDa class V heat shock protein OS=Medicago truncatula GN=MTR_7g086130 PE=3 SV=1) HSP 1 Score: 219.935 bits (559), Expect = 2.946e-55 Identity = 123/205 (60.00%), Postives = 138/205 (67.32%), Query Frame = 1 Query: 1 MESKHAHNYRSYEDFDPVFKWRREEAR---------FKREQIRIQINHHGVLVISGERPLDETKWRRFKKEFQISQYCNEDAIRGNFMDNILSIVMPKKVSFIPQEEQ-----IPELEDDEDDIYQDKTTFHNMEFQGKSRAEQTEDYKFKDALLDSEYTYTTNNHFEENDVETTREVALKXXXXXXXXXXXXXXXXDMSKSFMA 573 ME KHAHN RSYEDFDPVFKWRRE+ R FKREQIRIQINH G LVISGERP D TKW+RFKKEF++ +YCNEDAIRGNFM NILS+V+PKKV IPQEEQ IPELED D YQ+K T+ ++ F G+ R E+ SEYTY T+N F ENDVETTREVALK DMSK+ MA Sbjct: 1 MEHKHAHN-RSYEDFDPVFKWRREQDRDTIELHLPGFKREQIRIQINHLGFLVISGERPFDGTKWKRFKKEFELPKYCNEDAIRGNFMQNILSVVLPKKVDLIPQEEQEEEEKIPELED--LDKYQEKNTYKSLGFGGRDREEEIGTL--------SEYTYRTDNKFGENDVETTREVALKFMVVIIVVMVIVNYLVDMSKTVMA 194
BLAST of Ca_08219 vs. TrEMBL
Match: I3T228_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1) HSP 1 Score: 187.963 bits (476), Expect = 1.241e-45 Identity = 102/165 (61.82%), Postives = 117/165 (70.91%), Query Frame = 1 Query: 1 MESKHAHNYRSYEDFDPVFKWRREEAR---------FKREQIRIQINHHGVLVISGERPLDETKWRRFKKEFQISQYCNEDAIRGNFMDNILSIVMPKKVSFIPQEEQ-----IPELEDDEDDIYQDKTTFHNMEFQGKSRAEQTEDYKFKDALLDSEYTYTTNN 453 ME KHAHN RSY+DFDPVFKWRRE+ R FKREQIRIQINH G LVISGERP D TKW+RFKKEF++ +YCNEDAIRGNFM NILS+V+PKKV IPQEEQ IPELED D YQ+K T+ ++ F G+ R E+ SEYTY T+N Sbjct: 1 MEHKHAHN-RSYKDFDPVFKWRREQDRDTIELHLPGFKREQIRIQINHLGFLVISGERPFDGTKWKRFKKEFELPKYCNEDAIRGNFMQNILSVVLPKKVDLIPQEEQEEEEKIPELED--LDKYQEKNTYKSLGFGGRDREEEIGTL--------SEYTYRTDN 154
BLAST of Ca_08219 vs. TrEMBL
Match: K7MXW1_SOYBN (Uncharacterized protein OS=Glycine max PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 1.089e-33 Identity = 89/202 (44.06%), Postives = 111/202 (54.95%), Query Frame = 1 Query: 19 HNYRSYEDFDPVFKWRREEAR---------FKREQIRIQINHHGVLVISGERPLDETKWRRFKKEFQISQYCNEDAIRGNFMDNILSIVMPKKVSFIPQEEQIPELEDDEDDIYQDKTTFHNMEFQGKSRAEQTEDYKFKDALLDSEYTYTTNNH-FEEN-------DVETTREVALKXXXXXXXXXXXXXXXXDMSKSFMA 573 H RSYEDFDP+F WRREE R F+R+QIRIQINH G+LVISGER + +W+RFKKEF+I YCN+DAI GN M +ILS+VMPKK I QEEQ + E + ++ E TE+ K+ + + + + H FEEN ETTREVALK D+SKS MA Sbjct: 6 HTNRSYEDFDPLFMWRREEGRDTLELHLPGFRRDQIRIQINHVGLLVISGERHFEGNRWKRFKKEFEIPSYCNDDAIHGNMMQSILSVVMPKKSPQISQEEQEHKKE------------------RRANKKEDTEEASTKEGIAEEDIGHAEEYHQFEENYNYVRQLPQETTREVALKFMLVMVLILVIASYLADVSKSLMA 189
BLAST of Ca_08219 vs. TrEMBL
Match: I1MKZ4_SOYBN (Uncharacterized protein OS=Glycine max PE=3 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 7.807e-32 Identity = 85/198 (42.93%), Postives = 110/198 (55.56%), Query Frame = 1 Query: 7 SKHAHNYRSYEDFDPVFKWRREEAR---------FKREQIRIQINHHGVLVISGERPLDETKWRRFKKEFQISQYCNEDAIRGNFMDNILSIVMPKKVSFIPQEEQIPELEDDEDDIYQDKTTFHNMEFQGKSRAEQTEDYKFKDALLDSEYTYTTNNHFEENDVETTREVALKXXXXXXXXXXXXXXXXDMSKSFMA 573 +KHA+ RSYEDFDP+F WRREE R F+R+QIRIQINH G+LVISGER + +W+RFKKEF+I +CN+DAI GN M +ILS+VMPKK I QE+Q ++ + ++ T + A E +F++ NH ETTREVALK D+SKS MA Sbjct: 4 TKHAN--RSYEDFDPLFMWRREEGRDTLELHLPGFRRDQIRIQINHVGLLVISGERHFEGNRWKRFKKEFEIPSHCNDDAIHGNMMQSILSVVMPKKSPQINQEDQQEHKKEKRANKKEEAETSTKEAIAEEDMAHAEEYQQFEE----------NYNHVGPLPQETTREVALKFMLVMVLILVIASYLADVSKSLMA 189
BLAST of Ca_08219 vs. TrEMBL
Match: C6T4P8_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 2.272e-31 Identity = 84/198 (42.42%), Postives = 110/198 (55.56%), Query Frame = 1 Query: 7 SKHAHNYRSYEDFDPVFKWRREEAR---------FKREQIRIQINHHGVLVISGERPLDETKWRRFKKEFQISQYCNEDAIRGNFMDNILSIVMPKKVSFIPQEEQIPELEDDEDDIYQDKTTFHNMEFQGKSRAEQTEDYKFKDALLDSEYTYTTNNHFEENDVETTREVALKXXXXXXXXXXXXXXXXDMSKSFMA 573 +KHA+ RSYEDFDP+F WRREE R F+R+QIRIQINH G+LVISGER + +W+RFKKEF+I +CN+DAI GN + +ILS+VMPKK I QE+Q ++ + ++ T + A E +F++ NH ETTREVALK D+SKS MA Sbjct: 4 TKHAN--RSYEDFDPLFMWRREEGRDTLELHLPGFRRDQIRIQINHVGLLVISGERHFEGNRWKRFKKEFEIPSHCNDDAIHGNMVQSILSVVMPKKSPQINQEDQQEHKKEKRANKKEEAETSTKEAIAEEDMAHAEEYQQFEE----------NYNHVGPLPQETTREVALKFMLVMVLILVIASYLADVSKSLMA 189
BLAST of Ca_08219 vs. TrEMBL
Match: B9I5V4_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_571176 PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 3.184e-17 Identity = 47/138 (34.06%), Postives = 81/138 (58.70%), Query Frame = 1 Query: 31 SYEDFDPVFKWRREEAR---------FKREQIRIQINHHGVLVISGERPLDETKWRRFKKEFQISQYCNEDAIRGNFMDNILSIVMPKKVSFIPQEEQIPELED------DEDDIYQDKTTFHNMEFQGKSRAEQTED 399 SYEDF+P KWR EE + F++EQ+R+Q++ G + I+GER +DE++W RF+KE ++ + CN + +R N IL IVMPKK++ ++Q+ + ++D + +D T N++ ++ TE+ Sbjct: 9 SYEDFEPYCKWRIEEGKDTIEVHLHGFRKEQVRVQLSSIGNMTITGERRVDESRWTRFRKEIKVPKECNNNEVRANLSTGILYIVMPKKITLPSSQDQVNQENGQSSPKINQDTVAKDTAT-ENLDGSAENNKMTTEN 145
BLAST of Ca_08219 vs. TrEMBL
Match: K4CQA4_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc09g007140.2 PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 1.932e-14 Identity = 53/172 (30.81%), Postives = 86/172 (50.00%), Query Frame = 1 Query: 1 MESKHAHNYRSYEDFDPVFKWRREE---------ARFKREQIRIQINHHGVLVISGERPLDETKWRRFKKEFQISQYCNEDAIRGNFMDNILSIVMPKKVSFIPQ--EEQIPELEDDEDDIYQDKTTFHNMEFQGKSRAEQTEDYKFKDALLDSEYTYTTNNHFEENDVETT 483 M+SK A + YEDF P + +E+ F++EQ+R+Q+ GV+ ISG+RP+ E KW RF+K+F +SQ C+ I F + IL + PK ++ PQ ++++P + + + T+ E Q + QTE+ L + T EE D + T Sbjct: 1 MDSKGAAPNQVYEDFVPTTELVQEQDSDTLLLDLTGFRKEQVRVQLTRTGVVKISGQRPVAENKWLRFQKDFPVSQNCDRTKISAKFENGILYVKQPKLITTSPQKKDQELPTSDPQQPNDEPQPTSQKKDEQQTQDEKTQTEE------LPKHQATNAEKPEMEEQDTKET 166
BLAST of Ca_08219 vs. TrEMBL
Match: Q94GC5_SOLDE (Hsp20/alpha crystallin family protein OS=Solanum demissum GN=SDM1_2t00012 PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 2.523e-14 Identity = 58/172 (33.72%), Postives = 84/172 (48.84%), Query Frame = 1 Query: 1 MESKHAHNYRSYEDFDPVFKWRREE---------ARFKREQIRIQINHHGVLVISGERPLDETKWRRFKKEFQISQYCNEDAIRGNFMDNILSIVMPKKVSFIPQEEQIPELEDDEDDIYQDKTTFHNMEFQGKSRAEQTEDYKFKDALLDSEYTYTTNNHFEENDVETTRE 489 M+SK A ++YEDF P + +E+ FK+EQ+RIQ+ GVL ISG+RP+ E+KW RF+K+F +SQ C++ I F + IL + PK ++ E + EL D Q K K EQT+D K + TN E + T+E Sbjct: 1 MDSKGAAPNQTYEDFVPTTELVQEQDSDTLLIDLTGFKKEQVRIQLTRTGVLKISGQRPVAESKWLRFQKDFPVSQNCDKTKISAKFENGILHVKQPKLIT--SSENKGQEL-PTSDAQRQQKLADEPQPTPQKKNEEQTKDEKTPSPTEELPKHQATNADKPEMEEPNTKE 169
BLAST of Ca_08219 vs. TrEMBL
Match: I1M7E1_SOYBN (Uncharacterized protein OS=Glycine max PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 3.295e-14 Identity = 55/182 (30.22%), Postives = 89/182 (48.90%), Query Frame = 1 Query: 4 ESKHAHNYRSYEDFDPVFKWRREEAR---------FKREQIRIQINHHGVLVISGERPLDETKWRRFKKEFQISQYCNEDAIRGNFMDNILSIVMPKKVS----FIPQEEQIPELEDDEDDIYQDKTTFHNMEFQGKSRAEQTEDYKFKDALLDS---EYTYTTNNHFEENDVETTREVALK 501 +++ A N+ Y+DFDP F+W +E F +EQ+R+Q+ VL I+GER + E K RRF +EF I YC+ + + F +LSI PK ++ PQ ++ P + E + Q + H E K + T D K ++ +S + ++ +E D +T VA K Sbjct: 3 QAQSAANF-DYQDFDPFFEWSEDEGSATLIVMLPGFTKEQLRVQVTSTPVLRINGERQIVENKRRRFSREFSIPPYCDTNDVSAKFEGGVLSIKFPKLITPAARSQPQPQEAPTMPQKEKEPSQQQDQVHKQESLQKEKEPITSDEKEENKTEESSPQKENEPISDDDKEKDNKTEEVVAEK 183
BLAST of Ca_08219 vs. TrEMBL
Match: M0ZPF6_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400002009 PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 9.588e-14 Identity = 55/176 (31.25%), Postives = 90/176 (51.14%), Query Frame = 1 Query: 1 MESKHAHNYRSYEDFDPVFKWRREE---------ARFKREQIRIQINHHGVLVISGERPLDETKWRRFKKEFQISQYCNEDAIRGNFMDNILSIVMPKKV--SFIPQEEQIPELEDDEDDIYQDKTTFHNMEFQGKSRAEQTEDYKFKDALLDSEYTYTTNNHFEENDVETTREVA 495 M+SK A + YEDF P + +EE FK+EQ+R+Q+ GV+ ISG+RP+ E+KW RF+K+F ISQ C++ I F + IL + PK + S +++++P + + T+ E Q K + QT + L + T EE + + T+++A Sbjct: 1 MDSKGAAPNQVYEDFVPTTELVQEEDSDTLLLDLTGFKKEQVRVQLTRTGVVKISGQRPVAESKWLRFQKDFPISQNCDKTKISAKFENGILYVKQPKLITTSSEKKDQELPTSDAQQPKDELQPTSQKKDEEQTKDKKTQTP--APTEELPKHQATNAEKPEMEEPNTKETKDLA 174
BLAST of Ca_08219 vs. DB:Swiss
Match: RTM2_ARATH (Protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 2.668e-13 Identity = 37/99 (37.37%), Postives = 58/99 (58.59%), Query Frame = 1 Query: 34 YEDFDPVFKWR-REEAR--------FKREQIRIQINHHGVLV-ISGERPLDETKWRRFKKEFQISQYCNEDAIRGNFMDNILSIVMPK----KVSFIPQ 288 YEDF P +W+ + EA F +EQ+++ H ++ ++GERPL KW RF + F + Q C D I G+F +N+L+I MPK KV+++P+ Sbjct: 16 YEDFVPKSEWKDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANRKWSRFNEVFTVPQNCLVDKIHGSFKNNVLTITMPKETITKVAYLPE 114
BLAST of Ca_08219 vs. DB:Swiss
Match: RTM2C_ARATH (Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 2.668e-13 Identity = 37/99 (37.37%), Postives = 58/99 (58.59%), Query Frame = 1 Query: 34 YEDFDPVFKWR-REEAR--------FKREQIRIQINHHGVLV-ISGERPLDETKWRRFKKEFQISQYCNEDAIRGNFMDNILSIVMPK----KVSFIPQ 288 YEDF P +W+ + EA F +EQ+++ H ++ ++GERPL KW RF + F + Q C D I G+F +N+L+I MPK KV+++P+ Sbjct: 16 YEDFVPKSEWKDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANRKWSRFNEVFTVPQNCLVDKIHGSFKNNVLTITMPKETITKVAYLPE 114
BLAST of Ca_08219 vs. DB:Swiss
Match: RTM2B_ARATH (Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 2.673e-13 Identity = 37/99 (37.37%), Postives = 58/99 (58.59%), Query Frame = 1 Query: 34 YEDFDPVFKWR-REEAR--------FKREQIRIQINHHGVLV-ISGERPLDETKWRRFKKEFQISQYCNEDAIRGNFMDNILSIVMPK----KVSFIPQ 288 YEDF P +W+ + EA F +EQ+++ H ++ ++GERPL KW RF + F + Q C D I G+F +N+L+I MPK KV+++P+ Sbjct: 16 YEDFVPKSEWKDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANRKWSRFNEVFTVPQNCLVDKIHGSFKNNVLTITMPKETITKVAYLPE 114
BLAST of Ca_08219 vs. DB:Swiss
Match: RTM2A_ARATH (Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 3.435e-13 Identity = 37/99 (37.37%), Postives = 58/99 (58.59%), Query Frame = 1 Query: 34 YEDFDPVFKWR-REEAR--------FKREQIRIQINHHGVLV-ISGERPLDETKWRRFKKEFQISQYCNEDAIRGNFMDNILSIVMPK----KVSFIPQ 288 YEDF P +W+ + EA F +EQ+++ H ++ ++GERPL KW RF + F + Q C D I G+F +N+L+I MPK KV+++P+ Sbjct: 16 YEDFVPKSEWKDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANRKWNRFNEVFTVPQNCLVDKIHGSFKNNVLTITMPKETITKVAYLPE 114
BLAST of Ca_08219 vs. DB:Swiss
Match: RTM2D_ARATH (Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 5.805e-13 Identity = 37/99 (37.37%), Postives = 57/99 (57.58%), Query Frame = 1 Query: 34 YEDFDPVFKWR-REEAR--------FKREQIRIQINHHGVLV-ISGERPLDETKWRRFKKEFQISQYCNEDAIRGNFMDNILSIVMPK----KVSFIPQ 288 YEDF P +W+ + EA F +EQ+++ H ++ ++GERPL KW RF + F + Q C D I G+F N+L+I MPK KV+++P+ Sbjct: 16 YEDFVPKSEWKDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANRKWNRFNEVFTVPQNCLVDKIHGSFKKNVLTITMPKETITKVAYLPE 114 The following BLAST results are available for this feature:
BLAST of Ca_08219 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL) Total hits: 25
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BLAST of Ca_08219 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot) Total hits: 5
InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
Sequences
The
following sequences are available for this feature:
mRNA sequence >Ca_08219_v1.0_kabuli ID=Ca_08219_v1.0_kabuli; Name=Ca_08219; organism=Cicer arietinum; type=mRNA; length=576bpback to top protein sequence of Ca_08219_v1.0_kabuli >Ca_08219_v1.0_kabuli ID=Ca_08219_v1.0_kabuli; Name=Ca_08219_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=191bpback to top mRNA from alignment at Ca3:26886956..26887634+ Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.>Ca_08219_v1.0_kabuli ID=Ca_08219_v1.0_kabuli; Name=Ca_08219; organism=Cicer arietinum; type=mRNA; length=679bp; location=Sequence derived from: Ca3:26886956..26887634+ (Cicer arietinumback to top Coding sequence (CDS) from alignment at Ca3:26886956..26887634+ >Ca_08219_v1.0_kabuli ID=Ca_08219_v1.0_kabuli; Name=Ca_08219; organism=Cicer arietinum; type=CDS; length=576bp; location=Sequence derived from: Ca3:26886956..26887634+ (Cicer arietinumback to top |