Ca_03425, Ca_03425_v1.0_kabuli (mRNA) Cicer arietinum

Transcript Overview
NameCa_03425
Unique NameCa_03425_v1.0_kabuli
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length603
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca4chromosomeCa4:8081209..8082667 -Cicer arietinum CDC Frontier genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
capsR252Pisum sativum Cameor genome v1aPisum sativum
capsR257Pisum sativum Cameor genome v1aPisum sativum
capsR277Pisum sativum Cameor genome v1aPisum sativum
cavuR258Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
cavuR284Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
cavuR299Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
cavuR318Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
capvR321Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
capvR345Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
capvR361Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
capvR366Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caccR0503Cajanus cajan Asha genome v1.0Cajanus cajan
caccR0513Cajanus cajan Asha genome v1.0Cajanus cajan
ancaL0447Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0634Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0700Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0829Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0838Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL1123Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaL035Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaL192Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaL385Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaL492Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cazwsR252Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
cazwsR279Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
catifR267Vicia faba cv. Tiffany genome v1.0Vicia faba
catifR289Vicia faba cv. Tiffany genome v1.0Vicia faba
cavfhR266Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavfhR286Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
catifR328Vicia faba cv. Tiffany genome v1.0Vicia faba
catifR350Vicia faba cv. Tiffany genome v1.0Vicia faba
cavfhR328Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavfhR353Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavrvR263Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavrvR292Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavrvR363Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavssR304Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavssR332Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavssR395Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavuaR248Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cavuaR270Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cavuaR281Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cavuaR298Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cacanR114Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cacanR125Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cacanR131Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjcaL137Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcaL359Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcaL467Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
cacarR265Cicer arietinum
cacarR285Cicer arietinum
cacarR286Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
Vigun07g115900.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vfaba.Hedin2.R1.3g103680.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Psat06G0457100-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Psat03G0107400-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
jg31535.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-KK1_010770Cajanus cajan Asha genome v1.0Cajanus cajan
LR48_mrnaVigan02g110100Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-TanjilR_24634Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vfaba.Tiffany.R1.5g127000.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vfaba.Hedin2.R1.5g158800.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Phvul.007G166600.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-TanjilR_01833Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Va02G040620.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-XM_014655530.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Psat3g024960.1Pisum sativum Cameor genome v1aPisum sativum
evm.model.Chr07.2705Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Psat6g168000.1Pisum sativum Cameor genome v1aPisum sativum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-XM_004494259.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
rna-XM_012714408.2Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_03425-CDS1Ca_03425-CDS1Cicer arietinumCDS
Ca_03425-CDS2Ca_03425-CDS2Cicer arietinumCDS
Ca_03425-CDS3Ca_03425-CDS3Cicer arietinumCDS
Ca_03425-CDS4Ca_03425-CDS4Cicer arietinumCDS
Ca_03425-CDS5Ca_03425-CDS5Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_03425_v1.0_kabuliCa_03425_v1.0_kabuliCicer arietinumpolypeptide


Homology
[Close]
BLAST of Ca_03425 vs. SwissProt
Match: RU1C_VITVI (U1 small nuclear ribonucleoprotein C OS=Vitis vinifera GN=VIT_07s0104g01170 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.180e-29
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:    1 MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHL 174
            MPRYYCDYCDTYLTHDSPSVRKQHN+GYKHKANVRSYYQQFEEQQTQSLIDQRIKEHL
Sbjct:    1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHL 58
[Close]
BLAST of Ca_03425 vs. SwissProt
Match: RU1C2_SORBI (U1 small nuclear ribonucleoprotein C-2 OS=Sorghum bicolor GN=Sb04g028260 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.180e-29
Identity = 64/107 (59.81%), Postives = 69/107 (64.49%), Query Frame = 1 
Query:    1 MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLXXXXXXXXXXXXXNHLM-----VQRXXXXXXXXXXXXXXXGTQPMMPGV 306
            MPRYYCDYCDTYLTHDSPSVRKQHN+GYKHKANVR+YYQQFEEQQTQSLIDQRIKEHL              H++     V R                  P+MPGV
Sbjct:    1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQAAAFQAGAPFNQHMLAFPGAVARPRLPILPTPGMPHGFPQAPLMPGV 107
[Close]
BLAST of Ca_03425 vs. SwissProt
Match: RU1C1_SORBI (U1 small nuclear ribonucleoprotein C-1 OS=Sorghum bicolor GN=Sb04g009880 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.311e-29
Identity = 56/58 (96.55%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:    1 MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHL 174
            MPRYYCDYCDTYLTHDSPSVRKQHN+GYKHKANVR+YYQQFEEQQTQSLIDQRIKEHL
Sbjct:    1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHL 58
[Close]
BLAST of Ca_03425 vs. SwissProt
Match: RU1C_ARATH (U1 small nuclear ribonucleoprotein C OS=Arabidopsis thaliana GN=At4g03120 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.074e-28
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 1 
Query:    1 MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHL 174
            MPRYYCDYCDTYLTHDSPSVRKQHN+GYKHKANVR YYQQFEEQQTQSLIDQRIKEHL
Sbjct:    1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHL 58
[Close]
BLAST of Ca_03425 vs. SwissProt
Match: RU1C_NEMVE (U1 small nuclear ribonucleoprotein C OS=Nematostella vectensis GN=v1g244745 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.490e-18
Identity = 39/52 (75.00%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:    1 MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVRSYYQQFEEQQTQSLIDQ 156
            MP+YYCDYCDT+LTHDSPSVRK HN+G KHK NVR YYQ++ E+Q Q+LIDQ
Sbjct:    1 MPKYYCDYCDTFLTHDSPSVRKTHNNGRKHKENVRFYYQKWMEEQAQTLIDQ 52
[Close]
BLAST of Ca_03425 vs. SwissProt
Match: RU1C_MONDO (U1 small nuclear ribonucleoprotein C OS=Monodelphis domestica GN=SNRPC PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.662e-18
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:    1 MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVRSYYQQFEEQQTQSLIDQ 156
            MP++YCDYCDTYLTHDSPSVRK H SG KHK NVR YYQ++ E+Q QSLID+
Sbjct:    1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVRDYYQKWMEEQAQSLIDK 52
[Close]
BLAST of Ca_03425 vs. SwissProt
Match: RU1C_XENTR (U1 small nuclear ribonucleoprotein C OS=Xenopus tropicalis GN=snrpc PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.261e-17
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:    1 MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVRSYYQQFEEQQTQSLIDQ 156
            MP++YCDYCDTYLTHDSPSVRK H SG KHK NV+ YYQ++ E+Q QSLID+
Sbjct:    1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK 52
[Close]
BLAST of Ca_03425 vs. SwissProt
Match: RU1C_XENLA (U1 small nuclear ribonucleoprotein C OS=Xenopus laevis GN=snrpc PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.261e-17
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:    1 MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVRSYYQQFEEQQTQSLIDQ 156
            MP++YCDYCDTYLTHDSPSVRK H SG KHK NV+ YYQ++ E+Q QSLID+
Sbjct:    1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK 52
[Close]
BLAST of Ca_03425 vs. SwissProt
Match: RU1C_RAT (U1 small nuclear ribonucleoprotein C OS=Rattus norvegicus GN=Snrpc PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.261e-17
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:    1 MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVRSYYQQFEEQQTQSLIDQ 156
            MP++YCDYCDTYLTHDSPSVRK H SG KHK NV+ YYQ++ E+Q QSLID+
Sbjct:    1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK 52
[Close]
BLAST of Ca_03425 vs. SwissProt
Match: RU1C_MOUSE (U1 small nuclear ribonucleoprotein C OS=Mus musculus GN=Snrpc PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.261e-17
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:    1 MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVRSYYQQFEEQQTQSLIDQ 156
            MP++YCDYCDTYLTHDSPSVRK H SG KHK NV+ YYQ++ E+Q QSLID+
Sbjct:    1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK 52
[Close]
BLAST of Ca_03425 vs. TrEMBL
Match: I1JFF6_SOYBN (U1 small nuclear ribonucleoprotein C OS=Glycine max PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 7.014e-45
Identity = 103/205 (50.24%), Postives = 109/205 (53.17%), Query Frame = 1 
Query:    1 MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLXXXXXXXXXXXXXNHLMVQR------XXXXXXXXXXXXXXXGTQPMMPGVXXXXXXXXXXXXXYVSXXXXXXXXXXXXXXXXXXQLITXXXXXXXXXXXXXXXXXXXXXXXXXXXMASSAMYQTNPPAPSSGGYDNYNANAQAPEGN 597
            MPRYYCDYCDTYLTHDSPSVRKQHN+GYKHKANVR+YYQQFEEQQTQSLIDQRIKEHL             NHLMVQR                     G+QP+MPG+             YVS                  QL T                           M SSAMYQ NPPAPSSG YDNYNA+AQAPEGN
Sbjct:    1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGVAYNHLMVQRPNLPPVLPPPRLPIPGNAQIPGSQPLMPGMRPPVFPRPPGAPGYVSAPTMPPMLPPPGAPQAPGQLNTIPRPPSLAPPPAVPGSTAAPASNGAPSMVSSAMYQANPPAPSSGSYDNYNASAQAPEGN 205
[Close]
BLAST of Ca_03425 vs. TrEMBL
Match: I1L7Y6_SOYBN (U1 small nuclear ribonucleoprotein C OS=Glycine max PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 2.256e-43
Identity = 101/205 (49.27%), Postives = 106/205 (51.71%), Query Frame = 1 
Query:    1 MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLXXXXXXXXXXXXXNHLMVQRXXXXXXXXXXXXXXXGT------QPMMPGVXXXXXXXXXXXXXYVSXXXXXXXXXXXXXXXXXXQLITXXXXXXXXXXXXXXXXXXXXXXXXXXXMASSAMYQTNPPAPSSGGYDNYNANAQAPEGN 597
            MPRYYCDYCDTYLTHDSPSVRKQHN+GYKHKANVR+YYQQFEEQQTQSLIDQRIKEHL             NHLMVQR               G       QP+M G+             YVS                  QL T                           M SSAMYQ NPPAPSSG YDNYN +AQAPEGN
Sbjct:    1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGVAYNHLMVQRPNLPPVLPPPRLPIPGNAQIPGGQPLMQGMRPPVFPRPPGAPGYVSAHTMPPMLPPPGAPQVPGQLNTIPRPPSLAPPPTVPGSTATPASNGAPSMVSSAMYQANPPAPSSGSYDNYNTSAQAPEGN 205
[Close]
BLAST of Ca_03425 vs. TrEMBL
Match: B9GWP7_POPTR (U1 small nuclear ribonucleoprotein C OS=Populus trichocarpa GN=POPTRDRAFT_712203 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.992e-32
Identity = 83/201 (41.29%), Postives = 94/201 (46.77%), Query Frame = 1 
Query:    1 MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLXXXXXXXXXXXXXN-HLMVQRXXXXXXXXXXXXXXXGTQPMMPGV-XXXXXXXXXXXXXYVSXXXXXXXXXXXXXXXXXXQLITXXXXXXXXXXXXXXXXXXXXXXXXXXXMASSAMYQTNPPAPSSGGYDNYNANAQAPEGN 597
            MPRYYCDYCDTYLTHDSPSVRKQHN+GYKHKANVR YYQQFEEQQTQS+IDQRIKEHL             N HLMVQR                  P+ PG+              Y++                  Q+                             M     YQ N  A +SGG+D++N NA APE N
Sbjct:    1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSIIDQRIKEHLGQTAAFQQVGAAYNQHLMVQRPRLPVLPTPVMPIGGNNAPLFPGMRPPVLPRPMPGAPGYMNPPMMPPMMAPPGAPSLPGQMNGIPRPPTMIAQPNVPGSTAAPTPSGPPSMGPPVTYQANQAATTSGGFDSFNVNAAAPEAN 201
[Close]
BLAST of Ca_03425 vs. TrEMBL
Match: M5W4P7_PRUPE (U1 small nuclear ribonucleoprotein C OS=Prunus persica GN=PRUPE_ppa009808mg PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.981e-31
Identity = 84/207 (40.58%), Postives = 94/207 (45.41%), Query Frame = 1 
Query:    1 MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHL-----XXXXXXXXXXXXXNHLMVQRXXXXXXXXXXXXXXXGTQPMMPGV--XXXXXXXXXXXXXYVSXXXXXXXXXXXXXXXXXXQLITXXXXXXXXXXXXXXXXXXXXXXXXXXXMASSAMYQTNPPAPSSGGYDNYNANAQAPEGNQ 600
            MPRYYCDYCDTYLTHDSPSVRKQHN+GYKHKANVR YYQ+FEEQQTQSL+DQRIKEHL                   HLM QR               G   M+PG+               Y S                  QL                             MA   MYQ+N   P+SGGYD +N N Q P+ +Q
Sbjct:   70 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRLYYQKFEEQQTQSLVDQRIKEHLGQHLGQAAAYGQVGAAYNQHLMAQRPRLPVLPTPGMPQMPGGAQMVPGMRPPVLPRPMPGAPGGYGSAPPMMPMMAPPGAPGMPGQLNVPMRPPTMNPPPTVAGSTAPNASVGVPSMAPPPMYQSNQTPPTSGGYDGFNPNTQPPDSSQ 276
[Close]
BLAST of Ca_03425 vs. TrEMBL
Match: I3S8F7_LOTJA (U1 small nuclear ribonucleoprotein C OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 6.373e-30
Identity = 69/110 (62.73%), Postives = 72/110 (65.45%), Query Frame = 1 
Query:    1 MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLXXXXXXXXXXXXXNHLMVQR--------XXXXXXXXXXXXXXXGTQPMMPGV 306
            MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVR+YYQQFEEQQTQSLIDQRIKEHL             NHLMV R                       G QP+MPG+
Sbjct:    1 MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVRNYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGVAYNHLMVPRPGGPPLLPMPQPRFPMPGNVQMPGGQPLMPGM 110

HSP 2 Score: 63.1586 bits (152), Expect = 5.250e-8
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 1 
Query:  502 MASSAMYQTNPPAPSSGGYDNYNANAQAPEGN 597
            M SSAMYQ NP APSSGGYDNYNANAQAP+GN
Sbjct:  160 MVSSAMYQPNPSAPSSGGYDNYNANAQAPDGN 191
[Close]
BLAST of Ca_03425 vs. TrEMBL
Match: B9S3X9_RICCO (U1 small nuclear ribonucleoprotein C OS=Ricinus communis GN=RCOM_0556840 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 8.324e-30
Identity = 80/197 (40.61%), Postives = 91/197 (46.19%), Query Frame = 1 
Query:    1 MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLXXXXXXXXXXXXXNHLMVQRXXXXXXXXXXXXXXXGTQ-----PMMPGV--XXXXXXXXXXXXXYVSXXXXXXXXXXXXXXXXXXQLITXXXXXXXXXXXXXXXXXXXXXXXXXXXMASSAMYQTNPPAPSSGGYDNYN 570
            MPRYYCDYCDTYLTHDSPSVRKQHN+GYKHKANVRSYYQQFEEQQTQSLIDQRIKEHL             N  ++QR                 Q     P+MPG+               Y+S                  Q+                             M   A YQTNP  P+S G+D++N
Sbjct:    1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAAYNQHLLQRPRLPVLPTPMMPIPGSAQLPANTPLMPGIRPPPVLPRPVPAAPGYMSSPAMPPMVAPPGAPSLPGQVNGLPRPPMSIPPATVPGSAAVAPPSGAPSMVPPASYQTNPAPPTSAGFDSFN 197
[Close]
BLAST of Ca_03425 vs. TrEMBL
Match: M4EZE4_BRARP (U1 small nuclear ribonucleoprotein C OS=Brassica rapa subsp. pekinensis GN=Bra034187 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.791e-28
Identity = 64/102 (62.75%), Postives = 69/102 (67.65%), Query Frame = 1 
Query:    1 MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLXXXXXXXXXXXXXN-HLMVQRXXXXXXXXXXXXXXXGTQPMMPG 303
            MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVR+YYQQFEEQQTQSLIDQRIKEHL             N H++ +                  +PMMPG
Sbjct:    1 MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQAAAYNQVGGVFNQHMLARPRLPMMPMPMGMRPPILPRPMMPG 102
[Close]
BLAST of Ca_03425 vs. TrEMBL
Match: G3MJD1_9ACAR (Putative uncharacterized protein (Fragment) OS=Amblyomma maculatum PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.736e-27
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:    1 MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHL 174
            MPRYYCDYCDTYLTHDSPSVRKQHN+GYKHKANVRSYYQQFEEQQTQSLIDQRIKEHL
Sbjct:   63 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHL 120
[Close]
BLAST of Ca_03425 vs. TrEMBL
Match: Q6ETX3_ORYSJ (U1 small nuclear ribonucleoprotein C OS=Oryza sativa subsp. japonica GN=P0006C08.31 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.961e-27
Identity = 58/75 (77.33%), Postives = 61/75 (81.33%), Query Frame = 1 
Query:    1 MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLXXXXXXXXXXXXXNHLM 225
            MPRYYCDYCDTYLTHDSPSVRKQHN+GYKHKANVR+YYQQFEEQQTQSLIDQRIKEHL              HL+
Sbjct:    1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQAAAFQVGAPFNQHLL 75
[Close]
BLAST of Ca_03425 vs. TrEMBL
Match: K7V584_MAIZE (U1 small nuclear ribonucleoprotein C OS=Zea mays GN=ZEAMMB73_580988 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.961e-27
Identity = 58/75 (77.33%), Postives = 61/75 (81.33%), Query Frame = 1 
Query:    1 MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLXXXXXXXXXXXXXNHLM 225
            MPRYYCDYCDTYLTHDSPSVRKQHN+GYKHKANVR+YYQQFEEQQTQSLIDQRIKEHL              HL+
Sbjct:  194 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQAAAFQAGAPFNQHLL 268
[Close]
BLAST of Ca_03425 vs. DB:Swiss
Match: RU1C1_SORBI (U1 small nuclear ribonucleoprotein C-1 OS=Sorghum bicolor OX=4558 GN=Sb04g009880 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.045e-38
Identity = 56/58 (96.55%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:    1 MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHL 174
            MPRYYCDYCDTYLTHDSPSVRKQHN+GYKHKANVR+YYQQFEEQQTQSLIDQRIKEHL
Sbjct:    1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHL 58
[Close]
BLAST of Ca_03425 vs. DB:Swiss
Match: RU1C_VITVI (U1 small nuclear ribonucleoprotein C OS=Vitis vinifera OX=29760 GN=VIT_07s0104g01170 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.754e-37
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:    1 MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHL 174
            MPRYYCDYCDTYLTHDSPSVRKQHN+GYKHKANVRSYYQQFEEQQTQSLIDQRIKEHL
Sbjct:    1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHL 58
[Close]
BLAST of Ca_03425 vs. DB:Swiss
Match: RU1C2_SORBI (U1 small nuclear ribonucleoprotein C-2 OS=Sorghum bicolor OX=4558 GN=Sb04g028260 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.467e-37
Identity = 56/58 (96.55%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:    1 MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHL 174
            MPRYYCDYCDTYLTHDSPSVRKQHN+GYKHKANVR+YYQQFEEQQTQSLIDQRIKEHL
Sbjct:    1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHL 58
[Close]
BLAST of Ca_03425 vs. DB:Swiss
Match: RU1C_ARATH (U1 small nuclear ribonucleoprotein C OS=Arabidopsis thaliana OX=3702 GN=At4g03120 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.113e-36
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 1 
Query:    1 MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHL 174
            MPRYYCDYCDTYLTHDSPSVRKQHN+GYKHKANVR YYQQFEEQQTQSLIDQRIKEHL
Sbjct:    1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHL 58
[Close]
BLAST of Ca_03425 vs. DB:Swiss
Match: RU1C_NEMVE (U1 small nuclear ribonucleoprotein C OS=Nematostella vectensis OX=45351 GN=v1g244745 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.444e-22
Identity = 39/52 (75.00%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:    1 MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVRSYYQQFEEQQTQSLIDQ 156
            MP+YYCDYCDT+LTHDSPSVRK HN+G KHK NVR YYQ++ E+Q Q+LIDQ
Sbjct:    1 MPKYYCDYCDTFLTHDSPSVRKTHNNGRKHKENVRFYYQKWMEEQAQTLIDQ 52
[Close]
BLAST of Ca_03425 vs. DB:Swiss
Match: RU1C_MONDO (U1 small nuclear ribonucleoprotein C OS=Monodelphis domestica OX=13616 GN=SNRPC PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.518e-22
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:    1 MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVRSYYQQFEEQQTQSLIDQ 156
            MP++YCDYCDTYLTHDSPSVRK H SG KHK NVR YYQ++ E+Q QSLID+
Sbjct:    1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVRDYYQKWMEEQAQSLIDK 52
[Close]
BLAST of Ca_03425 vs. DB:Swiss
Match: RU1C_CAEBR (U1 small nuclear ribonucleoprotein C OS=Caenorhabditis briggsae OX=6238 GN=CBG19656 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.188e-21
Identity = 37/52 (71.15%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    1 MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVRSYYQQFEEQQTQSLIDQ 156
            MP+YYCDYCDT+LTHDSPSVRK HN G KHK NVR +YQ++ E Q Q L+DQ
Sbjct:    1 MPKYYCDYCDTFLTHDSPSVRKTHNGGRKHKDNVRMFYQKWMEDQAQKLVDQ 52
[Close]
BLAST of Ca_03425 vs. DB:Swiss
Match: RU1C_CAEEL (U1 small nuclear ribonucleoprotein C OS=Caenorhabditis elegans OX=6239 GN=F08B4.7 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.519e-21
Identity = 37/52 (71.15%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    1 MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVRSYYQQFEEQQTQSLIDQ 156
            MP+YYCDYCDT+LTHDSPSVRK HN G KHK NVR +YQ++ E Q Q L+DQ
Sbjct:    1 MPKYYCDYCDTFLTHDSPSVRKTHNGGRKHKDNVRMFYQKWMEDQAQKLVDQ 52
[Close]
BLAST of Ca_03425 vs. DB:Swiss
Match: RU1C_DANRE (U1 small nuclear ribonucleoprotein C OS=Danio rerio OX=7955 GN=snrpc PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.595e-21
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:    1 MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVRSYYQQFEEQQTQSLIDQ 156
            MP++YCDYCDTYLTHDSPSVRK H SG KHK NV+ YYQ++ E+Q QSLID+
Sbjct:    1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK 52
[Close]
BLAST of Ca_03425 vs. DB:Swiss
Match: RU1C_BRAFL (U1 small nuclear ribonucleoprotein C OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_69314 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.324e-21
Identity = 38/52 (73.08%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    1 MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVRSYYQQFEEQQTQSLIDQ 156
            MP+Y+CDYCDTYLTHDSPSVRK H +G KHK NVR YYQ++ E+Q Q LIDQ
Sbjct:    1 MPKYFCDYCDTYLTHDSPSVRKTHCNGRKHKENVRVYYQKWMEEQAQQLIDQ 52
The following BLAST results are available for this feature:
BLAST of Ca_03425 vs. SwissProt
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs Swissprot)
Total hits: 25
Match NameE-valueIdentityDescription
RU1C_VITVI4.180e-2998.28U1 small nuclear ribonucleoprotein C OS=Vitis vini... [more]
RU1C2_SORBI4.180e-2959.81U1 small nuclear ribonucleoprotein C-2 OS=Sorghum ... [more]
RU1C1_SORBI9.311e-2996.55U1 small nuclear ribonucleoprotein C-1 OS=Sorghum ... [more]
RU1C_ARATH2.074e-2896.55U1 small nuclear ribonucleoprotein C OS=Arabidopsi... [more]
RU1C_NEMVE1.490e-1875.00U1 small nuclear ribonucleoprotein C OS=Nematostel... [more]
RU1C_MONDO5.662e-1875.00U1 small nuclear ribonucleoprotein C OS=Monodelphi... [more]
RU1C_XENTR1.261e-1773.08U1 small nuclear ribonucleoprotein C OS=Xenopus tr... [more]
RU1C_XENLA1.261e-1773.08U1 small nuclear ribonucleoprotein C OS=Xenopus la... [more]
RU1C_RAT1.261e-1773.08U1 small nuclear ribonucleoprotein C OS=Rattus nor... [more]
RU1C_MOUSE1.261e-1773.08U1 small nuclear ribonucleoprotein C OS=Mus muscul... [more]

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BLAST of Ca_03425 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
I1JFF6_SOYBN7.014e-4550.24U1 small nuclear ribonucleoprotein C OS=Glycine ma... [more]
I1L7Y6_SOYBN2.256e-4349.27U1 small nuclear ribonucleoprotein C OS=Glycine ma... [more]
B9GWP7_POPTR3.992e-3241.29U1 small nuclear ribonucleoprotein C OS=Populus tr... [more]
M5W4P7_PRUPE1.981e-3140.58U1 small nuclear ribonucleoprotein C OS=Prunus per... [more]
I3S8F7_LOTJA6.373e-3062.73U1 small nuclear ribonucleoprotein C OS=Lotus japo... [more]
B9S3X9_RICCO8.324e-3040.61U1 small nuclear ribonucleoprotein C OS=Ricinus co... [more]
M4EZE4_BRARP7.791e-2862.75U1 small nuclear ribonucleoprotein C OS=Brassica r... [more]
G3MJD1_9ACAR1.736e-2798.28Putative uncharacterized protein (Fragment) OS=Amb... [more]
Q6ETX3_ORYSJ2.961e-2777.33U1 small nuclear ribonucleoprotein C OS=Oryza sati... [more]
K7V584_MAIZE2.961e-2777.33U1 small nuclear ribonucleoprotein C OS=Zea mays G... [more]

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BLAST of Ca_03425 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
RU1C1_SORBI9.045e-3896.55U1 small nuclear ribonucleoprotein C-1 OS=Sorghum ... [more]
RU1C_VITVI2.754e-3798.28U1 small nuclear ribonucleoprotein C OS=Vitis vini... [more]
RU1C2_SORBI6.467e-3796.55U1 small nuclear ribonucleoprotein C-2 OS=Sorghum ... [more]
RU1C_ARATH2.113e-3696.55U1 small nuclear ribonucleoprotein C OS=Arabidopsi... [more]
RU1C_NEMVE2.444e-2275.00U1 small nuclear ribonucleoprotein C OS=Nematostel... [more]
RU1C_MONDO7.518e-2275.00U1 small nuclear ribonucleoprotein C OS=Monodelphi... [more]
RU1C_CAEBR1.188e-2171.15U1 small nuclear ribonucleoprotein C OS=Caenorhabd... [more]
RU1C_CAEEL1.519e-2171.15U1 small nuclear ribonucleoprotein C OS=Caenorhabd... [more]
RU1C_DANRE1.595e-2173.08U1 small nuclear ribonucleoprotein C OS=Danio reri... [more]
RU1C_BRAFL2.324e-2173.08U1 small nuclear ribonucleoprotein C OS=Branchiost... [more]
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InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000690Zinc finger, C2H2-type matrinPROFILEPS50171ZF_MATRINcoord: 4..36
score: 12
IPR003604Zinc finger, U1-typeSMARTSM00451U1-like zinc fingercoord: 1..37
score: 1.1
IPR013085Zinc finger, U1-C typePFAMPF06220zf-U1coord: 1..38
score: 4.2
NoneNo IPR availableSEGsegsegcoord: 59..71
score: NAcoord: 79..93
score: NAcoord: 103..115
score: NAcoord: 119..136
score: NAcoord: 141..167
score
NoneNo IPR availableSUPERFAMILY57667C2H2 and C2HC zinc fingerscoord: 1..61
score: 5.6
NoneNo IPR availableSEGsegsegcoord: 1..15
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_03425_v1.0_kabuli ID=Ca_03425_v1.0_kabuli; Name=Ca_03425; organism=Cicer arietinum; type=mRNA; length=603bp
ATGCCTCGGTACTACTGTGACTACTGCGATACTTATTTGACCCACGATTC
GCCATCTGTTAGAAAGCAACATAATTCTGGATACAAACACAAGGCAAATG
TGAGGTCTTACTATCAGCAATTTGAAGAGCAACAAACCCAGAGTTTGATT
GATCAACGGATCAAAGAACATCTTGGGCAAGCTGCGGCTTTTCAGCAGGT
TGGTGTGGCTTTTAATCATTTAATGGTTCAAAGGCCAAACCTTCCTCCTG
TAATGCCACCCCCAAGATTTCCTATTCCTGGAACTCAACCAATGATGCCA
GGGGTCAGACCTCTCATGCCCAGACCGATTCCTGGGCCACCGGGGTATGT
TTCTGCACCTACCATGCCACAAATGATTCCTCCACCTGGGGCCCCTCAGA
TACCGGGTCAGCTAATTACCCTACCAAGGCCACCTTCATTAGCTCCCCCA
CCTACAGCTCCTGGAAGCACTGCAGCACCACCTTCCAATGGTGCTCCCTC
AATGGCATCATCAGCAATGTATCAAACTAATCCACCGGCACCATCATCTG
GAGGCTATGACAATTACAACGCCAATGCTCAAGCACCTGAGGGCAATCAG
TGA
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protein sequence of Ca_03425_v1.0_kabuli

>Ca_03425_v1.0_kabuli ID=Ca_03425_v1.0_kabuli; Name=Ca_03425_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=200bp
MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVRSYYQQFEEQQTQSLI
DQRIKEHLGQAAAFQQVGVAFNHLMVQRPNLPPVMPPPRFPIPGTQPMMP
GVRPLMPRPIPGPPGYVSAPTMPQMIPPPGAPQIPGQLITLPRPPSLAPP
PTAPGSTAAPPSNGAPSMASSAMYQTNPPAPSSGGYDNYNANAQAPEGNQ
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mRNA from alignment at Ca4:8081209..8082667-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_03425_v1.0_kabuli ID=Ca_03425_v1.0_kabuli; Name=Ca_03425; organism=Cicer arietinum; type=mRNA; length=1459bp; location=Sequence derived from: Ca4:8081209..8082667- (Cicer arietinum
ATGCCTCGGTACTAAAACTCTCTCCTTACATTTCACCTTTCATCGAATCC
ATGCCAATTTCATTCATTTTTCTTCTATTTTTCATTTCAGGTACTACTGT
GACTACTGCGATACTTATTTGACCCACGATTCGGTAAGTTGCTTCATTCC
CCAATTTCCGATTCTGTTAAATTTCACTTTTATTTTAACCTACCATGTAT
ACAAAAATCGCTTATTTATTCAGATAATTTCATTTTCTCATTTTTCGAAC
CAACATTAATATTAATAATAAGATATGTATTGAAACTTGTACATACGAAG
AGACAACGCAATGATGCTAACTTTGTGTTATGTTGCAGCCATCTGTTAGA
AAGCAACATAATTCTGGATACAAACACAAGGTGCTGTGAAATTTCTCAAT
TTTAAAGTAAGGTGCATTGCAATTTAGGCTATATTTGTGAGGCTTGCTAA
TTGTTTGTTCTTTCAGGCAAATGTGAGGTCTTACTATCAGCAATTTGAAG
AGCAACAAACCCAGAGTTTGATTGATCAACGGATCAAAGAACATCTTGGG
CAAGCTGCGGCTTTTCAGCAGGTTGGTGTGGCTTTTAATCATTTAATGGT
TCAAAGGCCAAACCTTCCTCCTGTAATGCCACCCCCAAGATTTCCTATTC
CTGGAACTCAACCAATGATGCCAGGGGTCAGACCTCTCATGCCCAGACCG
ATTCCTGGGCCACCGGGTGAGTGTCACCCCTCCACATACACCTTTCATGA
CTTCCATAAAGTTGCTACACTTCACCTCTCATTGAAGCATTCGTGCAGAT
ATATATAGTCCATTTCTTTATCCTTTTATAATGACCATGATTATGCACAT
CAATGGCTAATCCTTTTATAATGACCATGGTTATGCACATCAATGGCTAA
CCACGTTATTTTTGGCTTCTATCGCTGCAATTGCCATGTAATTGGGATTT
CCTTTTGATATTTGGCTTTTTTTTTCTTTTATAAATTTACAACAACTATT
ATTTTCATGTAACCTGTCTTTTAGTTGAGCATGCATGTATATTTTGATTT
GGTTTTTTGGTTAGAATTTTTGTTTGAAAATCAGCAACTAATCATGTACC
AAGAGTTCTGGTAAATTGGGCAGGCAAGTTCAAGCATTATAAACCAGTTC
TTTTATTTCAGCATATATAATGTAAGTGGTTTTCAATTTGGGTTTACAGG
GTATGTTTCTGCACCTACCATGCCACAAATGATTCCTCCACCTGGGGCCC
CTCAGATACCGGGTCAGCTAATTACCCTACCAAGGCCACCTTCATTAGCT
CCCCCACCTACAGCTCCTGGAAGCACTGCAGCACCACCTTCCAATGGTGC
TCCCTCAATGGCATCATCAGCAATGTATCAAACTAATCCACCGGCACCAT
CATCTGGAGGCTATGACAATTACAACGCCAATGCTCAAGCACCTGAGGGC
AATCAGTGA
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Coding sequence (CDS) from alignment at Ca4:8081209..8082667-

>Ca_03425_v1.0_kabuli ID=Ca_03425_v1.0_kabuli; Name=Ca_03425; organism=Cicer arietinum; type=CDS; length=603bp; location=Sequence derived from: Ca4:8081209..8082667- (Cicer arietinum
ATGCCTCGGTACTACTGTGACTACTGCGATACTTATTTGACCCACGATTC
GCCATCTGTTAGAAAGCAACATAATTCTGGATACAAACACAAGGCAAATG
TGAGGTCTTACTATCAGCAATTTGAAGAGCAACAAACCCAGAGTTTGATT
GATCAACGGATCAAAGAACATCTTGGGCAAGCTGCGGCTTTTCAGCAGGT
TGGTGTGGCTTTTAATCATTTAATGGTTCAAAGGCCAAACCTTCCTCCTG
TAATGCCACCCCCAAGATTTCCTATTCCTGGAACTCAACCAATGATGCCA
GGGGTCAGACCTCTCATGCCCAGACCGATTCCTGGGCCACCGGGGTATGT
TTCTGCACCTACCATGCCACAAATGATTCCTCCACCTGGGGCCCCTCAGA
TACCGGGTCAGCTAATTACCCTACCAAGGCCACCTTCATTAGCTCCCCCA
CCTACAGCTCCTGGAAGCACTGCAGCACCACCTTCCAATGGTGCTCCCTC
AATGGCATCATCAGCAATGTATCAAACTAATCCACCGGCACCATCATCTG
GAGGCTATGACAATTACAACGCCAATGCTCAAGCACCTGAGGGCAATCAG
TGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: KEGG ORTHOLOGY
TermDefinition
K11095SNRPC; U1 small nuclear ribonucleoprotein C
Vocabulary: KEGG PATHWAY
TermDefinition
ko03020RNA polymerase
Vocabulary: INTERPRO
TermDefinition
IPR000690Matrin/U1-C_Znf_C2H2
IPR003604Matrin/U1-like-C_Znf_C2H2
IPR013085U1-CZ_Znf_C2H2
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus