Ca_03744, Ca_03744_v1.0_kabuli (mRNA) Cicer arietinum

Transcript Overview
NameCa_03744
Unique NameCa_03744_v1.0_kabuli
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length405
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca4chromosomeCa4:5111878..5112282 +Cicer arietinum CDC Frontier genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum CDC Frontier genome v1.02013-01-01
InterProScan analysis for kabuli C. arietinum unigenes2013-10-24
Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL2013-10-24
BLAST: C. arietinum CDC Frontier (kabuli), Swissprot2019-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
capsR253Pisum sativum Cameor genome v1aPisum sativum
capsR277Pisum sativum Cameor genome v1aPisum sativum
capsR300Pisum sativum Cameor genome v1aPisum sativum
cavuR298Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
cavuR318Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
capvR360Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
capvR385Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caccR0475Cajanus cajan Asha genome v1.0Cajanus cajan
caccR0507Cajanus cajan Asha genome v1.0Cajanus cajan
ancaL0443Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0634Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0697Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0827Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0828Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL1121Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaL189Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaL277Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cazwsR247Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
cazwsR279Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
catifR289Vicia faba cv. Tiffany genome v1.0Vicia faba
catifR309Vicia faba cv. Tiffany genome v1.0Vicia faba
cavfhR286Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
catifR345Vicia faba cv. Tiffany genome v1.0Vicia faba
cavfhR307Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavfhR349Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavrvR262Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavrvR361Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavssR332Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavssR380Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavssR394Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavuaR280Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cavuaR282Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cacanR125Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cacanR131Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjcaL136Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcaL377Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
cacarR278Cicer arietinum
cacarR286Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
jg3141.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
evm.model.Chr07.1286Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
LR48_mrnaVigan10g096600Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vigun07g154100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-XM_014657720.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Phvul.007G186300.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Va02G053300.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Psat6g147040.1Pisum sativum Cameor genome v1aPisum sativum
rna-KK1_007130Cajanus cajan Asha genome v1.0Cajanus cajan
rna-TanjilR_10119Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Psat06G0396600-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vfaba.Hedin2.R1.3g083160.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-XM_004495731.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_03744-CDS1Ca_03744-CDS1Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_03744_v1.0_kabuliCa_03744_v1.0_kabuliCicer arietinumpolypeptide


Homology
BLAST of Ca_03744 vs. TrEMBL
Match: G7I6W8_MEDTR (Putative uncharacterized protein OS=Medicago truncatula GN=MTR_1g081270 PE=4 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 2.858e-45
Identity = 94/134 (70.15%), Postives = 105/134 (78.36%), Query Frame = 1
Query:    1 MNIAVVNSATVTDFVDDATNFDSFVNEWFAMIDTNGDGNLSRDEIRDGFGMFMPLGAHSQPKQEMESVLELIFTRXXXXXXXXXXXXXXXSLMTEIMYAVARGIGGSPVIVALENGSLLMKAVQRESATQSYPS 402
            MN+AVVNS TVTDFV+D TNFDSFV EWFAM+D NGDGNLSRDEIR GF  FMPLG+HSQ ++E++ +LELIFTR               SLMTEIM AVARGIGGSP+IV LE  SLLMKAVQRE A+QSYPS
Sbjct:    1 MNVAVVNSTTVTDFVNDTTNFDSFVKEWFAMLDANGDGNLSRDEIRGGFAWFMPLGSHSQSQEEIDRILELIFTRFDEDQNDSLDLNGFKSLMTEIMNAVARGIGGSPIIVVLEKDSLLMKAVQRELASQSYPS 134          
BLAST of Ca_03744 vs. TrEMBL
Match: I3SL23_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 4.136e-36
Identity = 83/135 (61.48%), Postives = 98/135 (72.59%), Query Frame = 1
Query:    1 MNIAVV-NSATVTDFVDDATNFDSFVNEWFAMIDTNGDGNLSRDEIRDGFGMFMPLGAHSQPKQEMESVLELIFTRXXXXXXXXXXXXXXXSLMTEIMYAVARGIGGSPVIVALENGSLLMKAVQRESATQSYPS 402
            M++AVV N +TVT F+DD   FDSFVNE FAM+D NGDG LSRDE+R  FG+FMPLG+ SQPKQE++ +L+LIF R               SLMTEIM A+ARGIGG P++VALEN SLLMKAVQ E A  S PS
Sbjct:    1 MSVAVVLNGSTVTGFMDDKAKFDSFVNERFAMVDENGDGELSRDEVRVRFGLFMPLGSESQPKQEVDGMLDLIFKRFDEDQNGMLDLKEFKSLMTEIMNALARGIGGFPIMVALENDSLLMKAVQHELAAYSSPS 135          
BLAST of Ca_03744 vs. TrEMBL
Match: I1NIT2_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 9.868e-30
Identity = 74/131 (56.49%), Postives = 85/131 (64.89%), Query Frame = 1
Query:    1 MNIAVVNSATVTDFVDDATNFDSFVNEWFAMIDTNGDGNLSRDEIRDGFGMFMPLGAHSQPKQEMESVLELIFTRXXXXXXXXXXXXXXXSLMTEIMYAVARGIGGSPVIVALENGSLLMKAVQRESATQS 393
            M++AVVNS T+T+FV+D   FD FVNEWFA ID NGDG LSRD+IR   GM +P G+  QP+QE E     IF R               +LMTEIM A AR IGGSPVIV L   SLLMKAVQ E AT+S
Sbjct:    1 MSVAVVNSFTITEFVNDKAKFDGFVNEWFARIDENGDGKLSRDKIRGRLGMLLPFGSELQPQQENEE----IFKRFDEDGNGALDLKEFKALMTEIMNAAARSIGGSPVIVLLGKDSLLMKAVQHELATRS 127          
BLAST of Ca_03744 vs. TrEMBL
Match: I1LBJ9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 1.289e-29
Identity = 74/131 (56.49%), Postives = 84/131 (64.12%), Query Frame = 1
Query:    1 MNIAVVNSATVTDFVDDATNFDSFVNEWFAMIDTNGDGNLSRDEIRDGFGMFMPLGAHSQPKQEMESVLELIFTRXXXXXXXXXXXXXXXSLMTEIMYAVARGIGGSPVIVALENGSLLMKAVQRESATQS 393
            M++AVVNS T+T+FV+D   FD FVNEWFA ID NGDG LSRD+IR   GM +P G+ S P+QE E     IF R               +LMTEIM A AR IGGSPVIV L   SLLMKAVQ E AT S
Sbjct:    1 MSVAVVNSFTITEFVNDKAKFDGFVNEWFARIDENGDGKLSRDKIRGRLGMLLPFGSESPPQQENEE----IFKRFDEDGNGALDLNEFKALMTEIMNAAARSIGGSPVIVVLGKDSLLMKAVQHELATPS 127          
BLAST of Ca_03744 vs. TrEMBL
Match: B9RES5_RICCO (Calcium ion binding protein, putative OS=Ricinus communis GN=RCOM_1428190 PE=4 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.168e-22
Identity = 55/126 (43.65%), Postives = 79/126 (62.70%), Query Frame = 1
Query:    1 MNIAVVNSATVTDFVDDATNFDSFVNEWFAMIDTNGDGNLSRDEIRDGFGMFMPLGAHSQPKQEMESVLELIFTRXXXXXXXXXXXXXXXSLMTEIMYAVARGIGGSPVIVALENGSLLMKAVQRE 378
            M +AV+N  TV +FV+D+  F+  V E F M+D NGDG +S+DE+ DGF   M L     PKQE+ ++ + IF R               SLM E+M+A+ARGIG SP+++AL+  S++MKAV+ E
Sbjct:    1 MTLAVINGPTVVEFVEDSNTFEICVKECFGMLDVNGDGVISKDELCDGFYKLMSLECGLHPKQEINNLYDAIFERFDEDKNGSINKQQFRSLMRELMFAMARGIGNSPILMALDTESMMMKAVEHE 126          
BLAST of Ca_03744 vs. TrEMBL
Match: M5W804_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016956mg PE=4 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 7.573e-22
Identity = 60/127 (47.24%), Postives = 79/127 (62.20%), Query Frame = 1
Query:   16 VNSATVTDFVDDATNFDSFVNEWFAMIDTNGDGNLSRDEIRDGFGMFMP-LGAHSQPKQEMESVLELIFTRXXXXXXXXXXXXXXXSLMTEIMYAVARGIGGSPVIVALENGSLLMKAVQRESATQS 393
            +N+ TVT FV+DAT+F+    E F  +D +G G LSR+++R GFG  +P +G  SQPK E+  + + IF R               SL+ E M AVARGIGGSPV+VALE+GSLL KA + E A  S
Sbjct:   11 LNNLTVTRFVEDATSFEKCSKECFGALDADGKGGLSREKLRAGFGKLLPGIGYVSQPKDEINVLHDAIFKRFDADQNGVIDCHEFKSLLMETMLAVARGIGGSPVLVALEHGSLLRKAAEHEQARTS 137          
BLAST of Ca_03744 vs. TrEMBL
Match: B9MZG7_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_595457 PE=4 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 9.891e-22
Identity = 57/126 (45.24%), Postives = 78/126 (61.90%), Query Frame = 1
Query:    1 MNIAVVNSATVTDFVDDATNFDSFVNEWFAMIDTNGDGNLSRDEIRDGFGMFMPLGAHSQPKQEMESVLELIFTRXXXXXXXXXXXXXXXSLMTEIMYAVARGIGGSPVIVALENGSLLMKAVQRE 378
            M++AVVN  TVT FV+D   F++ V E F M+D +GDG LSR E+R+GF   M LG  S  K++++ + + IF R                L+ E+M+A+ RG G SPV+VALE  SLLMKAV+ E
Sbjct:    1 MSLAVVNETTVTTFVEDMKAFENCVKECFEMLDVDGDGVLSRSELREGFCKLMSLGHESSKKEKIDHLFDTIFDRFDEDQNGSIDPREFKCLIRELMFAMGRGFGNSPVLVALEIDSLLMKAVEHE 126          
BLAST of Ca_03744 vs. TrEMBL
Match: K4CZJ1_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc10g044700.1 PE=4 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.580e-17
Identity = 50/128 (39.06%), Postives = 75/128 (58.59%), Query Frame = 1
Query:    1 MNIAVVNSATVTDFVDDATNFDSFVNEWFAMIDTNGDGNLSRDEIRDGFGMFMPLGAHSQPKQEMESVLELIFTRXXXXXXXXXXXXXXXSLMTEIMYAVARGIGGSPVIVALENGSLLMKAVQRESA 384
            M++ VV+   + +FVDDA  F  + ++ F M+DT+G+G LSRDE+++  G F       Q K+E+ S+ +++  R               +L  EIM A ARGIG SPV+V L+  SL+M+ VQR SA
Sbjct:    1 MSVVVVDGPMMEEFVDDAEAFGKWTDKHFDMLDTDGNGELSRDELQNRKGKFSSSEFELQSKEEISSLYDILIERFDIDKSGTIDRQEFKALTKEIMLAKARGIGNSPVLVILQGDSLVMRVVQRFSA 128          
BLAST of Ca_03744 vs. TrEMBL
Match: M1ABY4_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400007481 PE=4 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.134e-16
Identity = 49/128 (38.28%), Postives = 74/128 (57.81%), Query Frame = 1
Query:    1 MNIAVVNSATVTDFVDDATNFDSFVNEWFAMIDTNGDGNLSRDEIRDGFGMFMPLGAHSQPKQEMESVLELIFTRXXXXXXXXXXXXXXXSLMTEIMYAVARGIGGSPVIVALENGSLLMKAVQRESA 384
            M++ VV+   + +FVDD   F  + ++ F M+DT+G+G LSRDE+++  G F       Q K+E+ S+ +++  R               +L  EIM A ARGIG SPV+V L+  SL+M+ VQR SA
Sbjct:    1 MSVVVVDGPMMEEFVDDTEAFGKWTDKHFDMLDTDGNGELSRDELQNRKGKFSSCEFELQSKEEISSLYDILIERFDMDKSGTIDRQEFKALTKEIMLAKARGIGNSPVLVILQGDSLVMRVVQRFSA 128          
BLAST of Ca_03744 vs. TrEMBL
Match: Q3ECP9_ARATH (Calcium-binding EF-hand-containing protein OS=Arabidopsis thaliana GN=AT1G54530 PE=4 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.189e-12
Identity = 43/123 (34.96%), Postives = 66/123 (53.66%), Query Frame = 1
Query:   13 VVNSATVTDFVDDATNFDSFVNEWFAMIDTNGDGNLSRDEIRDGFGMFMPLGAHSQPKQEMESVLELIFTRXXXXXXXXXXXXXXXSLMTEIMYAVARGIGGSPVIVALENGSLLMKAVQRES 381
            V+ S T+  F+ D  +F+S  N++F ++D + +G LS  E+R G    + + +   P  E ++V   IF R                L+ EI+ A+ARGIG SPVI+ + N  L+MKAV  ES
Sbjct:    5 VITSKTLIGFLSDTKSFESITNDYFQILDLDKNGMLSPSELRQGLNNVVAVESEVAPGDETDNVYNAIFER----FGEDLVPKNFRDLIAEILTAMARGIGNSPVIMVVHNDGLIMKAVLHES 123          
The following BLAST results are available for this feature:
BLAST of Ca_03744 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
G7I6W8_MEDTR2.858e-4570.15Putative uncharacterized protein OS=Medicago trunc... [more]
I3SL23_LOTJA4.136e-3661.48Uncharacterized protein OS=Lotus japonicus PE=2 SV... [more]
I1NIT2_SOYBN9.868e-3056.49Uncharacterized protein OS=Glycine max PE=4 SV=2[more]
I1LBJ9_SOYBN1.289e-2956.49Uncharacterized protein OS=Glycine max PE=4 SV=2[more]
B9RES5_RICCO1.168e-2243.65Calcium ion binding protein, putative OS=Ricinus c... [more]
M5W804_PRUPE7.573e-2247.24Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
B9MZG7_POPTR9.891e-2245.24Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
K4CZJ1_SOLLC9.580e-1739.06Uncharacterized protein OS=Solanum lycopersicum GN... [more]
M1ABY4_SOLTU2.134e-1638.28Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
Q3ECP9_ARATH3.189e-1234.96Calcium-binding EF-hand-containing protein OS=Arab... [more]

Pages

back to top
BLAST of Ca_03744 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048Calcium-binding EF-handSMARTSM00054EF-hand, calcium binding motifcoord: 24..52
score: 0.0051coord: 68..96
score:
IPR011992EF-hand-like domainGENE3D1.10.238.10no descriptioncoord: 26..96
score: 3.1
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 33..45
score: NAcoord: 77..89
score
IPR018249EF-HAND 2PROFILEPS50222EF_HAND_2coord: 20..55
score: 11.696coord: 64..99
score: 11
NoneNo IPR availablePFAMPF13202EF_hand_3coord: 26..46
score: 2.1
NoneNo IPR availablePFAMPF13405EF_hand_4coord: 72..94
score: 0.
NoneNo IPR availableSEGsegsegcoord: 76..90
score
NoneNo IPR availableSUPERFAMILY47473EF-handcoord: 27..96
score: 7.6
NoneNo IPR availableSEGsegsegcoord: 34..60
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_03744_v1.0_kabuli ID=Ca_03744_v1.0_kabuli; Name=Ca_03744; organism=Cicer arietinum; type=mRNA; length=405bp
ATGAATATAGCAGTTGTCAACAGCGCCACCGTGACGGATTTCGTCGACGA
CGCAACAAATTTCGATAGTTTCGTGAACGAATGGTTTGCAATGATAGACA
CCAATGGCGACGGTAACCTTTCGCGTGATGAAATCCGTGATGGATTTGGG
ATGTTTATGCCTTTAGGTGCTCATTCACAGCCAAAACAAGAGATGGAAAG
TGTATTAGAATTAATATTCACAAGATTTGATGAAGATAAAAATGATTTAC
TCGATCTAAACGAGTTTAAATCATTAATGACCGAGATTATGTATGCTGTC
GCTCGTGGCATTGGTGGTTCTCCTGTCATTGTTGCTCTTGAAAATGGAAG
TTTGCTTATGAAGGCTGTTCAACGTGAATCGGCTACACAATCATATCCTT
CATGA
back to top

protein sequence of Ca_03744_v1.0_kabuli

>Ca_03744_v1.0_kabuli ID=Ca_03744_v1.0_kabuli; Name=Ca_03744_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=134bp
MNIAVVNSATVTDFVDDATNFDSFVNEWFAMIDTNGDGNLSRDEIRDGFG
MFMPLGAHSQPKQEMESVLELIFTRFDEDKNDLLDLNEFKSLMTEIMYAV
ARGIGGSPVIVALENGSLLMKAVQRESATQSYPS
back to top

mRNA from alignment at Ca4:5111878..5112282+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_03744_v1.0_kabuli ID=Ca_03744_v1.0_kabuli; Name=Ca_03744; organism=Cicer arietinum; type=mRNA; length=405bp; location=Sequence derived from: Ca4:5111878..5112282+ (Cicer arietinum
ATGAATATAGCAGTTGTCAACAGCGCCACCGTGACGGATTTCGTCGACGA CGCAACAAATTTCGATAGTTTCGTGAACGAATGGTTTGCAATGATAGACA CCAATGGCGACGGTAACCTTTCGCGTGATGAAATCCGTGATGGATTTGGG ATGTTTATGCCTTTAGGTGCTCATTCACAGCCAAAACAAGAGATGGAAAG TGTATTAGAATTAATATTCACAAGATTTGATGAAGATAAAAATGATTTAC TCGATCTAAACGAGTTTAAATCATTAATGACCGAGATTATGTATGCTGTC GCTCGTGGCATTGGTGGTTCTCCTGTCATTGTTGCTCTTGAAAATGGAAG TTTGCTTATGAAGGCTGTTCAACGTGAATCGGCTACACAATCATATCCTT CATGA
back to top

Coding sequence (CDS) from alignment at Ca4:5111878..5112282+

>Ca_03744_v1.0_kabuli ID=Ca_03744_v1.0_kabuli; Name=Ca_03744; organism=Cicer arietinum; type=CDS; length=405bp; location=Sequence derived from: Ca4:5111878..5112282+ (Cicer arietinum
ATGAATATAGCAGTTGTCAACAGCGCCACCGTGACGGATTTCGTCGACGA
CGCAACAAATTTCGATAGTTTCGTGAACGAATGGTTTGCAATGATAGACA
CCAATGGCGACGGTAACCTTTCGCGTGATGAAATCCGTGATGGATTTGGG
ATGTTTATGCCTTTAGGTGCTCATTCACAGCCAAAACAAGAGATGGAAAG
TGTATTAGAATTAATATTCACAAGATTTGATGAAGATAAAAATGATTTAC
TCGATCTAAACGAGTTTAAATCATTAATGACCGAGATTATGTATGCTGTC
GCTCGTGGCATTGGTGGTTCTCCTGTCATTGTTGCTCTTGAAAATGGAAG
TTTGCTTATGAAGGCTGTTCAACGTGAATCGGCTACACAATCATATCCTT
CATGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
IPR018249EF-HAND 2
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding