Ca_11013, Ca_11013_v1.0_kabuli (mRNA) Cicer arietinum
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Ca_11013 vs. TrEMBL
Match: B7FKT7_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1) HSP 1 Score: 451.825 bits (1161), Expect = 7.535e-125 Identity = 219/232 (94.40%), Postives = 229/232 (98.71%), Query Frame = 1 Query: 1 MEWRKCYLDVILVPLGFLISIGYHLWLWHKVRTQPHTTIVGINASGRRNWVDAMMKDNDKKNILAVQSLRNTIMGATLMATTSILLCSGLAAVISSTYSVKKPLNDAIYGAHGEFMVALKYVTLLTIFLFSFFCHSLAIRFINQVNILINTPQDPMSLVTPEYIFEILEKGFILNAVGNRLFYAGLPMLLWIFGPVLVFLCSITMVPVLYNLDFVYTSGKGKMDVDQKEDYV 696 MEWRKCYLDVILVPL LISIGYH+WLWHKVRTQPHTTIVGINASGRRNWV+AMMKDN+KKNILAVQSLRNTIMGATLMATTSILLCSGLAAVISSTYSVKKPLNDAIYGAHGEFMVALKYV+LLTIFLFSFFCHSL+IRFINQVNILINTPQDPMSLVTPEYIFEILEKGFILNAVGNRLFYAGLP+LLWIFGPV+VFLCS+ MVPVLYNLDFVYT+GKGKM+VDQKEDYV Sbjct: 1 MEWRKCYLDVILVPLAMLISIGYHVWLWHKVRTQPHTTIVGINASGRRNWVNAMMKDNEKKNILAVQSLRNTIMGATLMATTSILLCSGLAAVISSTYSVKKPLNDAIYGAHGEFMVALKYVSLLTIFLFSFFCHSLSIRFINQVNILINTPQDPMSLVTPEYIFEILEKGFILNAVGNRLFYAGLPLLLWIFGPVMVFLCSLAMVPVLYNLDFVYTTGKGKMNVDQKEDYV 232
BLAST of Ca_11013 vs. TrEMBL
Match: I3S0I1_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1) HSP 1 Score: 449.129 bits (1154), Expect = 4.884e-124 Identity = 218/232 (93.97%), Postives = 228/232 (98.28%), Query Frame = 1 Query: 1 MEWRKCYLDVILVPLGFLISIGYHLWLWHKVRTQPHTTIVGINASGRRNWVDAMMKDNDKKNILAVQSLRNTIMGATLMATTSILLCSGLAAVISSTYSVKKPLNDAIYGAHGEFMVALKYVTLLTIFLFSFFCHSLAIRFINQVNILINTPQDPMSLVTPEYIFEILEKGFILNAVGNRLFYAGLPMLLWIFGPVLVFLCSITMVPVLYNLDFVYTSGKGKMDVDQKEDYV 696 MEWRKCYLDVILVPL LISIGYH+WLWHKVRTQPHTTIVGINASGRRNWV+AMMKDN+KKNILAVQSLRNTIMGATLMATTSILLCSGLAAVISSTYSVKKPLNDAIYGAHGEFMVALKYV+LLTIFLFSFFCHSL+I FINQVNILINTPQDPMSLVTPEYIFEILEKGFILNAVGNRLFYAGLP+LLWIFGPV+VFLCS+ MVPVLYNLDFVYT+GKGKM+VDQKEDYV Sbjct: 1 MEWRKCYLDVILVPLAMLISIGYHVWLWHKVRTQPHTTIVGINASGRRNWVNAMMKDNEKKNILAVQSLRNTIMGATLMATTSILLCSGLAAVISSTYSVKKPLNDAIYGAHGEFMVALKYVSLLTIFLFSFFCHSLSIGFINQVNILINTPQDPMSLVTPEYIFEILEKGFILNAVGNRLFYAGLPLLLWIFGPVMVFLCSLAMVPVLYNLDFVYTTGKGKMNVDQKEDYV 232
BLAST of Ca_11013 vs. TrEMBL
Match: I1MW76_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 434.876 bits (1117), Expect = 9.532e-120 Identity = 212/233 (90.99%), Postives = 224/233 (96.14%), Query Frame = 1 Query: 1 MEWRKCYLDVILVPLGFLISIGYHLWLWHKVRTQPHTTIVGINASGRRNWVDAMMKDNDKKNILAVQSLRNTIMGATLMATTSILLCSGLAAVISSTYSVKKPLNDAIYGAHGEFMVALKYVTLLTIFLFSFFCHSLAIRFINQVNILINTPQDPMSLVTPEYIFEILEKGFILNAVGNRLFYAGLPMLLWIFGPVLVFLCSITMVPVLYNLDFVYTSGKGKMDVDQ-KEDYV 696 MEWRKCYLDVILVPL FL SIGYH WLWHKVRTQPHTTI+GINASGRRNWV+AMMKDNDKKNILAVQSLRNTIMGATLMATTSILLCSGLAAVISSTYSVKKPLNDA+YGAHGEFMVALKYVTLLTIFLFSFFCHSL+IRFINQVNILINTPQDPMSLVTP+YI EILEKGFILN VGNRLFYAGLP+LLWIFGPVLVFLCS+TMVPVLYNLDFV+TSGKGK+D ++ D+V Sbjct: 1 MEWRKCYLDVILVPLVFLTSIGYHFWLWHKVRTQPHTTIIGINASGRRNWVNAMMKDNDKKNILAVQSLRNTIMGATLMATTSILLCSGLAAVISSTYSVKKPLNDAVYGAHGEFMVALKYVTLLTIFLFSFFCHSLSIRFINQVNILINTPQDPMSLVTPQYIKEILEKGFILNTVGNRLFYAGLPLLLWIFGPVLVFLCSLTMVPVLYNLDFVFTSGKGKVDANEINRDFV 233
BLAST of Ca_11013 vs. TrEMBL
Match: I1M9W5_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 430.254 bits (1105), Expect = 2.348e-118 Identity = 208/233 (89.27%), Postives = 223/233 (95.71%), Query Frame = 1 Query: 1 MEWRKCYLDVILVPLGFLISIGYHLWLWHKVRTQPHTTIVGINASGRRNWVDAMMKDNDKKNILAVQSLRNTIMGATLMATTSILLCSGLAAVISSTYSVKKPLNDAIYGAHGEFMVALKYVTLLTIFLFSFFCHSLAIRFINQVNILINTPQDPMSLVTPEYIFEILEKGFILNAVGNRLFYAGLPMLLWIFGPVLVFLCSITMVPVLYNLDFVYTSGKGKMDVDQ-KEDYV 696 MEWRKCYLDVILVPLGFL SIGYH WLWHKVRTQPHTTI+GINASGRRNWV+ MMKDNDKKNILAVQSLRNTIMGATLMAT SILLCSGLAA+ISSTYSVKKPLNDA+YGAHGEFMVALKYVTLLTIFLFSFFC+SL+IRFINQVNILINTPQDPMSLVTP+YI EILE+GFILN VGNRLFYAGLP+LLWIFGPVLVFLCS+TMVPVLYNLDFV+TSGKGK+D ++ D+V Sbjct: 1 MEWRKCYLDVILVPLGFLTSIGYHFWLWHKVRTQPHTTIIGINASGRRNWVNGMMKDNDKKNILAVQSLRNTIMGATLMATASILLCSGLAALISSTYSVKKPLNDAVYGAHGEFMVALKYVTLLTIFLFSFFCYSLSIRFINQVNILINTPQDPMSLVTPQYIKEILERGFILNTVGNRLFYAGLPLLLWIFGPVLVFLCSLTMVPVLYNLDFVFTSGKGKVDANEINRDFV 233
BLAST of Ca_11013 vs. TrEMBL
Match: I3SYH7_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 419.083 bits (1076), Expect = 5.413e-115 Identity = 201/232 (86.64%), Postives = 219/232 (94.40%), Query Frame = 1 Query: 1 MEWRKCYLDVILVPLGFLISIGYHLWLWHKVRTQPHTTIVGINASGRRNWVDAMMKDNDKKNILAVQSLRNTIMGATLMATTSILLCSGLAAVISSTYSVKKPLNDAIYGAHGEFMVALKYVTLLTIFLFSFFCHSLAIRFINQVNILINTPQDPMSLVTPEYIFEILEKGFILNAVGNRLFYAGLPMLLWIFGPVLVFLCSITMVPVLYNLDFVYTSGKGKMDVDQKEDYV 696 MEWRKCYLDVILVPLG LISI Y+ WLWHKVRTQPHTT VGIN+SGRRNWV+A+MKDN+KKNILAVQSLRNTIMGATLMATTSILLCSGLAAVISSTYSVKKPLNDA+YG HGEFM+ALKYVTLLTIFLFSFFCHSL+IRF+NQVN LINTPQDPMSLVTPEYI +ILE+GF+LN VGNRLFY GLP+LLWIFGPVLVFL S+TMVPVLYNLD V+ SGKGKMD++QK D+V Sbjct: 2 MEWRKCYLDVILVPLGLLISICYNFWLWHKVRTQPHTTTVGINSSGRRNWVNAIMKDNEKKNILAVQSLRNTIMGATLMATTSILLCSGLAAVISSTYSVKKPLNDAVYGGHGEFMIALKYVTLLTIFLFSFFCHSLSIRFLNQVNFLINTPQDPMSLVTPEYISQILERGFVLNTVGNRLFYTGLPLLLWIFGPVLVFLSSVTMVPVLYNLDVVFFSGKGKMDLNQKGDFV 233
BLAST of Ca_11013 vs. TrEMBL
Match: G7I551_MEDTR (Putative uncharacterized protein OS=Medicago truncatula GN=MTR_1g009030 PE=4 SV=1) HSP 1 Score: 412.92 bits (1060), Expect = 3.879e-113 Identity = 204/232 (87.93%), Postives = 214/232 (92.24%), Query Frame = 1 Query: 1 MEWRKCYLDVILVPLGFLISIGYHLWLWHKVRTQPHTTIVGINASGRRNWVDAMMKDNDKKNILAVQSLRNTIMGATLMATTSILLCSGLAAVISSTYSVKKPLNDAIYGAHGEFMVALKYVTLLTIFLFSFFCHSLAIRFINQVNILINTPQDPMSLVTPEYIFEILEKGFILNAVGNRLFYAGLPMLLWIFGPVLVFLCSITMVPVLYNLDFVYTSGKGKMDVDQKEDYV 696 MEWRKCYLDVILVPL LISIGYH+WLWHKVRTQPHTTIVGINASGRRNWV+AMMKDN+KKNILAVQSLRNTIMGATLMATTSILLCSGLAAVISSTYSVKKPLNDAIYGAHGEFMVALKYV+LLTIFLFSFFCHSL+IRFINQVNILINTPQDPM FILNAVGNRLFYAGLP+LLWIFGPV+VFLCS+ MVPVLYNLDFVYT+GKGKM+VDQKEDYV Sbjct: 1 MEWRKCYLDVILVPLAMLISIGYHVWLWHKVRTQPHTTIVGINASGRRNWVNAMMKDNEKKNILAVQSLRNTIMGATLMATTSILLCSGLAAVISSTYSVKKPLNDAIYGAHGEFMVALKYVSLLTIFLFSFFCHSLSIRFINQVNILINTPQDPM---------------FILNAVGNRLFYAGLPLLLWIFGPVMVFLCSLAMVPVLYNLDFVYTTGKGKMNVDQKEDYV 217
BLAST of Ca_11013 vs. TrEMBL
Match: I1K969_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 409.838 bits (1052), Expect = 3.284e-112 Identity = 198/234 (84.62%), Postives = 217/234 (92.74%), Query Frame = 1 Query: 1 MEWRKCYLDVILVPLGFLISIGYHLWLWHKVRTQPHTTIVGINASGRRNWVDAMMKDNDKKNILAVQSLRNTIMGATLMATTSILLCSGLAAVISSTYSVKKPLNDAIYGAHGEFMVALKYVTLLTIFLFSFFCHSLAIRFINQVNILINTPQDP-MSLVTPEYIFEILEKGFILNAVGNRLFYAGLPMLLWIFGPVLVFLCSITMVPVLYNLDFVYT-SGKGKMDVDQKEDYV 696 MEW+KCYLDVILVPLGFLISIGYH WLW+ VRT PHTTI+GINASGRRNWV AMMKDNDKKNILAVQSLRNTIMGATLMATTSILLCSGLAA++SSTYSVKKPL D +YG HGEFM++LKYVTLL+IFLFSFFCHSL+IRFINQVNILINTPQDP MSLVTPEY+ EILEKGF+LN VGNRLFYA LP+LLWIFGPVLVFLCS+TMVPVLYNLDFV T + KGKM +++ D+V Sbjct: 1 MEWKKCYLDVILVPLGFLISIGYHFWLWYTVRTHPHTTIIGINASGRRNWVAAMMKDNDKKNILAVQSLRNTIMGATLMATTSILLCSGLAAIVSSTYSVKKPLEDTVYGGHGEFMISLKYVTLLSIFLFSFFCHSLSIRFINQVNILINTPQDPIMSLVTPEYVNEILEKGFLLNTVGNRLFYAALPLLLWIFGPVLVFLCSLTMVPVLYNLDFVVTGANKGKMQLNENRDFV 234
BLAST of Ca_11013 vs. TrEMBL
Match: I1JUP9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 407.527 bits (1046), Expect = 1.630e-111 Identity = 200/235 (85.11%), Postives = 217/235 (92.34%), Query Frame = 1 Query: 1 MEWRKCYLDVILVPLGFLISIGYHLWLWHKVRTQPHTTIVGINASGRRNWVDAMMKDNDKKNILAVQSLRNTIMGATLMATTSILLCSGLAAVISSTYSVKKPLNDAIYGAHGEFMVALKYVTLLTIFLFSFFCHSLAIRFINQVNILINTPQDPM-SLVTPEYIFEILEKGFILNAVGNRLFYAGLPMLLWIFGPVLVFLCSITMVPVLYNLDFVYTS-GKGKM-DVDQKEDYV 696 MEW+KCYLDVILVPLGFLISIGYH WLW+ VRT PHTTI+GINASGRRNWV AMMKDNDKKNILAVQSLRNTIMGATLMATTSILLCSGLAA++SSTYSVKKPL D +YG HGEFM++LKYVTLL+IFLFSFFCHSL+IRFINQVNILINTPQDPM SLVTPEY+ EILEKGF+LN VGNRLFYA LP+LLWIFGPVLVFLCS+TMVPVLYNLDFV TS KG M DV+Q D++ Sbjct: 1 MEWKKCYLDVILVPLGFLISIGYHFWLWYTVRTHPHTTIIGINASGRRNWVAAMMKDNDKKNILAVQSLRNTIMGATLMATTSILLCSGLAAIVSSTYSVKKPLEDTVYGGHGEFMISLKYVTLLSIFLFSFFCHSLSIRFINQVNILINTPQDPMSSLVTPEYVNEILEKGFLLNTVGNRLFYAALPLLLWIFGPVLVFLCSLTMVPVLYNLDFVVTSTNKGTMDDVNQNRDFL 235
BLAST of Ca_11013 vs. TrEMBL
Match: G7J2V8_MEDTR (Putative uncharacterized protein OS=Medicago truncatula GN=MTR_3g109280 PE=4 SV=1) HSP 1 Score: 401.364 bits (1030), Expect = 1.168e-109 Identity = 193/232 (83.19%), Postives = 213/232 (91.81%), Query Frame = 1 Query: 1 MEWRKCYLDVILVPLGFLISIGYHLWLWHKVRTQPHTTIVGINASGRRNWVDAMMKDNDKKNILAVQSLRNTIMGATLMATTSILLCSGLAAVISSTYSVKKPLNDAIYGAHGEFMVALKYVTLLTIFLFSFFCHSLAIRFINQVNILINTPQDPMSLVTPEYIFEILEKGFILNAVGNRLFYAGLPMLLWIFGPVLVFLCSITMVPVLYNLDFVYTSGKGKMDVDQKEDYV 696 MEW+KCYLDVILVPL L+SIGYH+WLW+ VRT PHTTI+ INASGRRNWV AMMKDN+KKNILAVQ+LRNTIMGATLMATTSILLCSGLAA+ISSTYSVKKPLND++YGAHGEFM ALKYVTLLTIFLFSFFCHSL+IRFINQVNILINTPQD MSLVTP Y+ E+LE+GF LN VGNRLFY+ LP+LLWIFGPVLVFLCS+TMVP+LYNLDFV T KGKMD +Q D+V Sbjct: 1 MEWKKCYLDVILVPLAILLSIGYHVWLWYNVRTHPHTTIIAINASGRRNWVAAMMKDNEKKNILAVQTLRNTIMGATLMATTSILLCSGLAAIISSTYSVKKPLNDSVYGAHGEFMEALKYVTLLTIFLFSFFCHSLSIRFINQVNILINTPQDSMSLVTPSYVSELLERGFTLNTVGNRLFYSALPLLLWIFGPVLVFLCSLTMVPLLYNLDFVIT--KGKMDPNQNTDFV 230
BLAST of Ca_11013 vs. TrEMBL
Match: B9SPR9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0205190 PE=4 SV=1) HSP 1 Score: 392.119 bits (1006), Expect = 7.086e-107 Identity = 184/234 (78.63%), Postives = 215/234 (91.88%), Query Frame = 1 Query: 1 MEWRKCYLDVILVPLGFLISIGYHLWLWHKVRTQPHTTIVGINASGRRNWVDAMMKDNDKKNILAVQSLRNTIMGATLMATTSILLCSGLAAVISSTYSVKKPLNDAIYGAHGEFMVALKYVTLLTIFLFSFFCHSLAIRFINQVNILINTPQDPMSLVTPEYIFEILEKGFILNAVGNRLFYAGLPMLLWIFGPVLVFLCSITMVPVLYNLDFVYTSG--KGKMDVDQKEDYV 696 MEWRKCY+DV+LVPLGF+I++ YH WLWHKVRTQP +TI+G NA+GRR WV AMMKDNDKKNILAVQ+LRN IMG+TLMATTSILL +GLAA+ISSTYSVKKPLNDA+YGAHGEFMVALKYVTLL+IFLFSFFCHSL+IRF+NQVN+LINTP DPMS+VTP+Y+ E+LEKGFILN VGNRLFYA +P+LLWIFGPVLVFLC +TMVPVLYNLDFV+ +G KGK+ V+ + ++V Sbjct: 1 MEWRKCYMDVVLVPLGFMITMAYHAWLWHKVRTQPLSTIIGTNATGRRFWVSAMMKDNDKKNILAVQTLRNLIMGSTLMATTSILLSAGLAAIISSTYSVKKPLNDAVYGAHGEFMVALKYVTLLSIFLFSFFCHSLSIRFVNQVNLLINTPPDPMSIVTPDYVSELLEKGFILNTVGNRLFYAAMPLLLWIFGPVLVFLCCVTMVPVLYNLDFVFANGTAKGKVGVNGEREFV 234 The following BLAST results are available for this feature:
BLAST of Ca_11013 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL) Total hits: 25
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BLAST of Ca_11013 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot) Total hits: 0
Expression
Available Analyses Select an Expression Analysis Select a property to group and sort biological samples Select a property to color biological samples Hover the mouse over a column in the graph to view more information about that biological sample. You can click and drag to rearrange groups along the x-axis. You can also click and drag to move the legend. InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
Sequences
The
following sequences are available for this feature:
mRNA sequence >Ca_11013_v1.0_kabuli ID=Ca_11013_v1.0_kabuli; Name=Ca_11013; organism=Cicer arietinum; type=mRNA; length=699bpback to top protein sequence of Ca_11013_v1.0_kabuli >Ca_11013_v1.0_kabuli ID=Ca_11013_v1.0_kabuli; Name=Ca_11013_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=232bpback to top mRNA from alignment at Ca4:40948769..40950768- Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.>Ca_11013_v1.0_kabuli ID=Ca_11013_v1.0_kabuli; Name=Ca_11013; organism=Cicer arietinum; type=mRNA; length=2000bp; location=Sequence derived from: Ca4:40948769..40950768- (Cicer arietinumback to top Coding sequence (CDS) from alignment at Ca4:40948769..40950768- >Ca_11013_v1.0_kabuli ID=Ca_11013_v1.0_kabuli; Name=Ca_11013; organism=Cicer arietinum; type=CDS; length=699bp; location=Sequence derived from: Ca4:40948769..40950768- (Cicer arietinumback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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