Ca_14908, Ca_14908_v1.0_kabuli (mRNA) Cicer arietinum
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Gene/transcripts from the same species that appear to represent the same gene
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Ca_14908 vs. TrEMBL
Match: I3SXB7_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 6.173e-32 Identity = 77/124 (62.10%), Postives = 82/124 (66.13%), Query Frame = 1 Query: 16 RTIPFAWNLITAGYVEQTVHGVDINIICLLFIGKLLEPVWGPREFLN------------------------------YTPLSGFHGVISGFLVSIKQIIPDQEIPFLKIKMK-----VLLCQSA 282 RTIPFAWNLITAGYVEQTVHGV I+I+CLL IGKLLEPVWGPREF+ YTPLSGFHGVISGFLVSIKQIIPDQE+PF+ IKMK LLC A Sbjct: 59 RTIPFAWNLITAGYVEQTVHGVVISIVCLLLIGKLLEPVWGPREFIKFIFIVNILTSLCIFITAIALYYITRQEIYLYTPLSGFHGVISGFLVSIKQIIPDQELPFVNIKMKWLPSIALLCSIA 182
BLAST of Ca_14908 vs. TrEMBL
Match: G7I9J5_MEDTR (Transmembrane protein OS=Medicago truncatula GN=MTR_1g095490 PE=4 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 6.173e-32 Identity = 77/124 (62.10%), Postives = 82/124 (66.13%), Query Frame = 1 Query: 16 RTIPFAWNLITAGYVEQTVHGVDINIICLLFIGKLLEPVWGPREFLN------------------------------YTPLSGFHGVISGFLVSIKQIIPDQEIPFLKIKMK-----VLLCQSA 282 RTIPFAWNLITAGYVEQTVHGV I+I+CLL IGKLLEPVWGPREF+ YTPLSGFHGVISGFLVSIKQIIPDQE+PF+ IKMK LLC A Sbjct: 59 RTIPFAWNLITAGYVEQTVHGVVISIVCLLLIGKLLEPVWGPREFIKFIFIVNILTSLCIFITAIALYYITRQEIYLYTPLSGFHGVISGFLVSIKQIIPDQELPFVNIKMKWLPSIALLCSIA 182
BLAST of Ca_14908 vs. TrEMBL
Match: I1LD21_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2) HSP 1 Score: 128.257 bits (321), Expect = 9.224e-28 Identity = 71/124 (57.26%), Postives = 78/124 (62.90%), Query Frame = 1 Query: 16 RTIPFAWNLITAGYVEQTVHGVDINIICLLFIGKLLEPVWGPREFLN------------------------------YTPLSGFHGVISGFLVSIKQIIPDQEIPFLKIKMK-----VLLCQSA 282 RTIPFAWNLITAGYVEQ+V+GV ++ I LLFIGKLLEPVWGPREFL Y P SGFHGVI GFLV IKQI+PDQE+PFLKIK+K LLC A Sbjct: 72 RTIPFAWNLITAGYVEQSVYGVVVSTIGLLFIGKLLEPVWGPREFLKFIFIVNFLTSLCIFITAIALYCITGQESYLYMPFSGFHGVIFGFLVGIKQIVPDQELPFLKIKVKWLPSIALLCSIA 195
BLAST of Ca_14908 vs. TrEMBL
Match: I1JCX7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 1.332e-26 Identity = 64/114 (56.14%), Postives = 74/114 (64.91%), Query Frame = 1 Query: 16 RTIPFAWNLITAGYVEQTVHGVDINIICLLFIGKLLEPVWGPREFLN------------------------------YTPLSGFHGVISGFLVSIKQIIPDQEIPFLKIKMKVL 267 RTIPFAWNLITAGYVEQ+++GV ++ + LLFIGKLLEP+WG REF Y PLSGFHGV+SGFLV IKQIIPDQE+PF+KIK K L Sbjct: 50 RTIPFAWNLITAGYVEQSIYGVVVSTLSLLFIGKLLEPIWGSREFFKFIFVVNLLTSVCLFITAIALYYITRLETYLYMPLSGFHGVVSGFLVGIKQIIPDQELPFIKIKTKWL 163
BLAST of Ca_14908 vs. TrEMBL
Match: I1MNM2_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 1.740e-26 Identity = 63/114 (55.26%), Postives = 74/114 (64.91%), Query Frame = 1 Query: 16 RTIPFAWNLITAGYVEQTVHGVDINIICLLFIGKLLEPVWGPREFLN------------------------------YTPLSGFHGVISGFLVSIKQIIPDQEIPFLKIKMKVL 267 RTIPFAWNLITAGYVEQ+++GV ++ + LLFIGKLLEP+WG REF Y PLSGFHGV+SGFLV +KQIIPDQE+PF+KIK K L Sbjct: 50 RTIPFAWNLITAGYVEQSIYGVVVSTLSLLFIGKLLEPIWGSREFFKFIFVVNLLTSVCLFITAIALYYITRLETYLYMPLSGFHGVVSGFLVGVKQIIPDQELPFIKIKTKWL 163
BLAST of Ca_14908 vs. TrEMBL
Match: M5VXK3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009062mg PE=4 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 2.512e-25 Identity = 67/133 (50.38%), Postives = 78/133 (58.65%), Query Frame = 1 Query: 16 RTIPFAWNLITAGYVEQTVHGVDINIICLLFIGKLLEPVWGPREFLN------------------------------YTPLSGFHGVISGFLVSIKQIIPDQEIPFLKIKMKVLLCQSAFQEILKQMMNRQSS 324 RTIPF WNL+TAGY+EQ+V+GV ++ + LLFIGKLLEPVWG REFL Y PLSGF+GV+SGFLV IKQIIPDQE+P LKIK K L S I QS+ Sbjct: 50 RTIPFVWNLLTAGYIEQSVYGVVVSTLGLLFIGKLLEPVWGSREFLKFIFVVNFLTSICTFITAIALYYITMNENYLYLPLSGFYGVLSGFLVGIKQIIPDQELPLLKIKSKWLPSLSILLSIAISFWTAQSA 182
BLAST of Ca_14908 vs. TrEMBL
Match: I3SV60_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 2.512e-25 Identity = 63/114 (55.26%), Postives = 71/114 (62.28%), Query Frame = 1 Query: 16 RTIPFAWNLITAGYVEQTVHGVDINIICLLFIGKLLEPVWGPREFLN------------------------------YTPLSGFHGVISGFLVSIKQIIPDQEIPFLKIKMKVL 267 RTIPFAWNLITAGY+EQTV+GV ++ LLF GKLLEP+WG EF Y PLSGFHGVISGFLV +KQIIPDQE+PF+KIK K L Sbjct: 51 RTIPFAWNLITAGYIEQTVYGVVVSTFSLLFFGKLLEPIWGSGEFCKFIFVVNFLTSVSVFITAIALYYITRQENYLYMPLSGFHGVISGFLVGLKQIIPDQELPFIKIKTKWL 164
BLAST of Ca_14908 vs. TrEMBL
Match: A9NUR8_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 6.841e-23 Identity = 56/104 (53.85%), Postives = 67/104 (64.42%), Query Frame = 1 Query: 16 RTIPFAWNLITAGYVEQTVHGVDINIICLLFIGKLLEPVWGPREFLN------------------------------YTPLSGFHGVISGFLVSIKQIIPDQEI 237 +T+PFAWNL+TAGY+EQ++ G+ +NI CLLF GKLLEPVWGPREFL YTPLSGFHGV+SGFLV +KQI+P QEI Sbjct: 45 KTVPFAWNLLTAGYLEQSIFGLILNIACLLFSGKLLEPVWGPREFLKFIAAVNFSTSISIFFTAILLFYITGRDEFLYTPLSGFHGVLSGFLVGVKQIMPYQEI 148
BLAST of Ca_14908 vs. TrEMBL
Match: B9T4T0_RICCO (Transmembrane protein, putative OS=Ricinus communis GN=RCOM_0332900 PE=4 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 1.524e-22 Identity = 56/114 (49.12%), Postives = 71/114 (62.28%), Query Frame = 1 Query: 16 RTIPFAWNLITAGYVEQTVHGVDINIICLLFIGKLLEPVWGPREFLN------------------------------YTPLSGFHGVISGFLVSIKQIIPDQEIPFLKIKMKVL 267 +TIPF WNLITAGY+EQ+++GV ++ +CLL +GKLLEPVWG +EFL Y P+SGF GV+SGFLV +KQIIPDQE+ L+IK K L Sbjct: 50 KTIPFGWNLITAGYIEQSIYGVVVSTLCLLIMGKLLEPVWGSKEFLKFIFIVNFLTSVCVFITAIALYYITTQENYLYMPISGFQGVLSGFLVGMKQIIPDQELSVLRIKAKWL 163
BLAST of Ca_14908 vs. TrEMBL
Match: D7TMB0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g04120 PE=4 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.990e-22 Identity = 59/117 (50.43%), Postives = 72/117 (61.54%), Query Frame = 1 Query: 16 RTIPFAWNLITAGYVEQTVHGVDINIICLLFIGKLLEPVWGPREFLN------------------------------YTPLSGFHGVISGFLVSIKQIIPDQEI---PFLKIKMKVL 267 RTIPFAWNLIT+GY+EQT++G ++ + LLF+GKLLEP+WG REFL Y PLSGFHGV+SGFLV IKQIIPDQE+ LKI+ + L Sbjct: 50 RTIPFAWNLITSGYIEQTIYGTVVSTVGLLFLGKLLEPIWGTREFLKFIFVVNFLTSVCVFITAIALYYITRQENYLYMPLSGFHGVLSGFLVGIKQIIPDQELSLFSLLKIRARWL 166
BLAST of Ca_14908 vs. DB:Swiss
Match: RBL19_ARATH (Rhomboid-like protein 19 OS=Arabidopsis thaliana OX=3702 GN=RBL19 PE=2 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 1.814e-27 Identity = 57/114 (50.00%), Postives = 66/114 (57.89%), Query Frame = 1 Query: 16 RTIPFAWNLITAGYVEQTVHGVDINIICLLFIGKLLEPVWGPREFLN------------------------------YTPLSGFHGVISGFLVSIKQIIPDQEIPFLKIKMKVL 267 RTIPFAWNLIT+GY E +V+GV + + LLF+GK LEPVWG EFL Y P +GFHGV++G LV IKQIIPDQEI LKIK K L Sbjct: 46 RTIPFAWNLITSGYFELSVYGVVFSTVSLLFMGKFLEPVWGSTEFLKFIFVVNFLTYLCVFVTAIALYYITRLEVYLYMPFAGFHGVLAGLLVGIKQIIPDQEILLLKIKAKWL 159 The following BLAST results are available for this feature:
BLAST of Ca_14908 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL) Total hits: 25
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BLAST of Ca_14908 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
Sequences
The
following sequences are available for this feature:
mRNA sequence >Ca_14908_v1.0_kabuli ID=Ca_14908_v1.0_kabuli; Name=Ca_14908; organism=Cicer arietinum; type=mRNA; length=501bpback to top protein sequence of Ca_14908_v1.0_kabuli >Ca_14908_v1.0_kabuli ID=Ca_14908_v1.0_kabuli; Name=Ca_14908_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=166bpback to top mRNA from alignment at Ca4:40096228..40097962+ Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.>Ca_14908_v1.0_kabuli ID=Ca_14908_v1.0_kabuli; Name=Ca_14908; organism=Cicer arietinum; type=mRNA; length=1735bp; location=Sequence derived from: Ca4:40096228..40097962+ (Cicer arietinumback to top Coding sequence (CDS) from alignment at Ca4:40096228..40097962+ >Ca_14908_v1.0_kabuli ID=Ca_14908_v1.0_kabuli; Name=Ca_14908; organism=Cicer arietinum; type=CDS; length=501bp; location=Sequence derived from: Ca4:40096228..40097962+ (Cicer arietinumback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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