Ca_19057, Ca_19057_v1.0_kabuli (mRNA) Cicer arietinum

Transcript Overview


Name	Ca_19057
Unique Name	Ca_19057_v1.0_kabuli
Type	mRNA
Organism	Cicer arietinum (chickpea)
Sequence length	588

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Ca4	chromosome	Ca4:21205937..21206524 -	Cicer arietinum CDC Frontier genome v1.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum CDC Frontier genome v1.0	2013-01-01
InterProScan analysis for kabuli C. arietinum unigenes	2013-10-24
Homology Analysis: Kabuli C.arietinum mRNA vs Swissprot	2013-10-24
Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL	2013-10-24
BLAST: C. arietinum CDC Frontier (kabuli), Swissprot	2019-05-21

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
capvR380	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
capvR389	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
caccR0453	Cajanus cajan Asha genome v1.0	Cajanus cajan
ancaL0161	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancaL0282	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancaL0903	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancaL1204	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
cazwsR254	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
cazwsR283	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
cazwsR320	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
catifR294	Vicia faba cv. Tiffany genome v1.0	Vicia faba
catifR333	Vicia faba cv. Tiffany genome v1.0	Vicia faba
cavfhR292	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
cavrvR356	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
cavrvR367	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
cavssR355	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
cavssR393	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
cavssR397	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
cacanR131	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
cacarR292		Cicer arietinum
cacarR308		Cicer arietinum

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Ca_19057-CDS1	Ca_19057-CDS1	Cicer arietinum	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Ca_19057_v1.0_kabuli	Ca_19057_v1.0_kabuli	Cicer arietinum	polypeptide

Homology

[Close]

BLAST of Ca_19057 vs. SwissProt
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 1.858e-34
Identity = 77/181 (42.54%), Postives = 111/181 (61.33%), Query Frame = 1

Query:   34 LNRILQYLKGTPGRELYFQKS--HNQGIEVYTDSDWAGSLSDRKSTTGYCTFVWG-NLVTWRSKKQSVVARSSAEAEFRAMAQGICEGIWLKRMLDEIKIPTNYTMRILCDNKAAISIAKNPVHHDRTKHVEIDKHFIKEKIDHEIISVNHISSNRQTADILTKALSRHTYETIRSNLGMI 567
            L R+L+YLKGT   +L F+K+      I  Y DSDWAGS  DRKSTTGY   ++  NL+ W +K+Q+ VA SS EAE+ A+ + + E +WLK +L  I I     ++I  DN+  ISIA NP  H R KH++I  HF +E++ + +I + +I +  Q ADI TK L    +  +R  LG++
Sbjct: 1221 LKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGLL 1401

[Close]

BLAST of Ca_19057 vs. SwissProt
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.975e-33
Identity = 75/188 (39.89%), Postives = 119/188 (63.30%), Query Frame = 1

Query:    1 MSNPIETHMKALNRILQYLKGTPGRELYFQKSHNQGIEVYTDSDWAGSLSDRKSTTGYCTFVWGNLVTWRSKKQSVVARSSAEAEFRAMAQGICEGIWLKRMLDEIKIPTNYTMRILCDNKAAISIAKNPVHHDRTKHVEIDKHFIKEKIDHEIISVNHISSNRQTADILTKALSRHTYETIRSNLGM 564
            + NP + H +A+  IL+YL+GT G  L F  S +  ++ YTD+D AG + +RKS+TGY     G  ++W+SK Q  VA S+ EAE+ A  +   E IWLKR L E+ +     + + CD+++AI ++KN ++H RTKH+++  H+I+E +D E + V  IS+N   AD+LTK + R+ +E  +  +GM
Sbjct: 1140 LENPGKEHWEAVKWILRYLRGTTGDCLCFGGS-DPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYV-VYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFELCKELVGM 1325

[Close]

BLAST of Ca_19057 vs. SwissProt
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.866e-18
Identity = 42/98 (42.86%), Postives = 60/98 (61.22%), Query Frame = 1

Query:    1 MSNPIETHMKALNRILQYLKGTPGRELYFQKSHNQGIEVYTDSDWAGSLSDRKSTTGYCTFVWGNLVTWRSKKQSVVARSSAEAEFRAMAQGICEGIW 294
            M  P       L R+L+Y+KGT    LY  K+    ++ + DSDWAG  S R+STTG+CTF+  N+++W +K+Q  V+RSS E E+RA+A    E  W
Sbjct:  128 MHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Ca_19057 vs. SwissProt
Match: YJ41B_YEAST (Transposon Ty4-J Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY4B-J PE=2 SV=3)

HSP 1 Score: 58.151 bits (139), Expect = 3.900e-8
Identity = 48/178 (26.97%), Postives = 79/178 (44.38%), Query Frame = 1

Query:   10 PIETHMKALNRILQYLKGTPGRELYFQKSHNQGIEVYTDSDWA-GSLSDRKSTTGYCTFVWGNLVTWRSKKQSVVARSSAEAEFRAMAQGICEGIWLKRMLDEIKIPTNYTMRILCDNKAAISIAKNPVHHDRTKHVEIDKHFIKEKIDHEIISVNHISSNRQTADILTKALSRHTYE 540
            P E     + +I+QYL       +++ +  N+  +V   +D + GS  D +S  G   +   N+    S K +    SS EAE  A+ +G  +   LK  L E+    N  + ++ D+K AI          + K   I    IKEKI  + I +  I+     AD+LTK +S   ++
Sbjct: 1605 PHERVFYMIYKIIQYLVRYKDIGIHYDRDCNKDKKVIAITDASVGSEYDAQSRIGVILWYGMNIFNVYSNKSTNRCVSSTEAELHAIYEGYADSETLKVTLKELGEGDNNDIVMITDSKPAIQGLNRSYQQPKEKFTWIKTEIIKEKIKEKSIKLLKITGKGNIADLLTKPVSASDFK 1782

[Close]

BLAST of Ca_19057 vs. SwissProt
Match: YH41B_YEAST (Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY4B-H PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 3.900e-8
Identity = 48/178 (26.97%), Postives = 79/178 (44.38%), Query Frame = 1

Query:   10 PIETHMKALNRILQYLKGTPGRELYFQKSHNQGIEVYTDSDWA-GSLSDRKSTTGYCTFVWGNLVTWRSKKQSVVARSSAEAEFRAMAQGICEGIWLKRMLDEIKIPTNYTMRILCDNKAAISIAKNPVHHDRTKHVEIDKHFIKEKIDHEIISVNHISSNRQTADILTKALSRHTYE 540
            P E     + +I+QYL       +++ +  N+  +V   +D + GS  D +S  G   +   N+    S K +    SS EAE  A+ +G  +   LK  L E+    N  + ++ D+K AI          + K   I    IKEKI  + I +  I+     AD+LTK +S   ++
Sbjct: 1604 PHERVFYMIYKIIQYLVRYKDIGIHYDRDCNKDKKVIAITDASVGSEYDAQSRIGVILWYGMNIFNVYSNKSTNRCVSSTEAELHAIYEGYADSETLKVTLKELGEGDNNDIVMITDSKPAIQGLNRSYQQPKEKFTWIKTEIIKEKIKEKSIKLLKITGKGNIADLLTKPVSASDFK 1781

[Close]

BLAST of Ca_19057 vs. TrEMBL
Match: A5C0P1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021615 PE=4 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 5.416e-76
Identity = 137/194 (70.62%), Postives = 169/194 (87.11%), Query Frame = 1

Query:    1 MSNPIETHMKALNRILQYLKGTPGRELYFQKSHNQGIEVYTDSDWAGSLSDRKSTTGYCTFVWGNLVTWRSKKQSVVARSSAEAEFRAMAQGICEGIWLKRMLDEIKIPTNYTMRILCDNKAAISIAKNPVHHDRTKHVEIDKHFIKEKIDHEIISVNHISSNRQTADILTKALSRHTYETIRSNLGMIDIYHP 582
            M+NP E +MKA+ RILQYLK +PGR LYF+K+ ++ +EV+TD+DWAGSL+DR+STTGYC++VWGNLVTWRSKKQSVVARSSAEAEFRAMA GICEG+WL+R+L E+ I +N TM +LCDNKA ISIAKNPV HDRTKHVEID+HFIKEK++   I + +I S+RQTADILTKAL + TYE ++S LGM+DIY+P
Sbjct:   85 MNNPNERNMKAVYRILQYLKKSPGRGLYFKKTSSREVEVFTDADWAGSLTDRRSTTGYCSYVWGNLVTWRSKKQSVVARSSAEAEFRAMAHGICEGMWLQRILKELGIISNSTMTVLCDNKATISIAKNPVQHDRTKHVEIDRHFIKEKLEGGTIRLMYIPSSRQTADILTKALPKTTYENMKSKLGMLDIYYP 278

[Close]

BLAST of Ca_19057 vs. TrEMBL
Match: A5B6M3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015023 PE=4 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 6.621e-74
Identity = 130/193 (67.36%), Postives = 166/193 (86.01%), Query Frame = 1

Query:    1 MSNPIETHMKALNRILQYLKGTPGRELYFQKSHNQGIEVYTDSDWAGSLSDRKSTTGYCTFVWGNLVTWRSKKQSVVARSSAEAEFRAMAQGICEGIWLKRMLDEIKIPTNYTMRILCDNKAAISIAKNPVHHDRTKHVEIDKHFIKEKIDHEIISVNHISSNRQTADILTKALSRHTYETIRSNLGMIDIYH 579
            M+NP E HM A+ RIL+YLK TPG+ L+FQ++ N+ IE+++D+DWAGS++DR+ST+GYC+FVWGNLVTWRSKKQSVVARSSAEAEFRAMAQGICEGIWL R+L+E+++P  + M + CDN+AAISIAKNPVHHDRTKHVEID+HFIKEKI+  +  V++  +N QTADILTKAL+R  +E +   LGMI+IY+
Sbjct:  816 MNNPTEKHMTAVIRILRYLKMTPGKGLFFQRTTNKEIEIFSDADWAGSVTDRRSTSGYCSFVWGNLVTWRSKKQSVVARSSAEAEFRAMAQGICEGIWLNRLLEELRVPLKHPMVLYCDNQAAISIAKNPVHHDRTKHVEIDRHFIKEKIEEGVFKVSYTPTNCQTADILTKALARVNFEDLTEKLGMINIYN 1008

[Close]

BLAST of Ca_19057 vs. TrEMBL
Match: A5ALH5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004341 PE=4 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 6.621e-74
Identity = 133/194 (68.56%), Postives = 165/194 (85.05%), Query Frame = 1

Query:    1 MSNPIETHMKALNRILQYLKGTPGRELYFQKSHNQGIEVYTDSDWAGSLSDRKSTTGYCTFVWGNLVTWRSKKQSVVARSSAEAEFRAMAQGICEGIWLKRMLDEIKIPTNYTMRILCDNKAAISIAKNPVHHDRTKHVEIDKHFIKEKIDHEIISVNHISSNRQTADILTKALSRHTYETIRSNLGMIDIYHP 582
            M+NP E HMK + RILQYLK +P R LYF+K+ ++ +EV+TD+DWAGSL+DR+STTGYC++VWGNLVTWRSKKQSVVARSSA+AEFRAMA GICEG+WL+R+L E+ I +N T+ +LCDNKA ISIAKNPV HDRTKHVEID HFIKEK++   I + +I S+RQT DILTKAL + TYE ++S LGM+DIY+P
Sbjct: 1166 MNNPTERHMKVVYRILQYLKKSPSRGLYFKKTSSREVEVFTDADWAGSLTDRRSTTGYCSYVWGNLVTWRSKKQSVVARSSAKAEFRAMAHGICEGMWLQRILKELGIISNSTLTVLCDNKATISIAKNPVQHDRTKHVEIDCHFIKEKLEGGTIRLMYIPSSRQTVDILTKALPKATYENMKSKLGMLDIYNP 1359

[Close]

BLAST of Ca_19057 vs. TrEMBL
Match: A5AET3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027250 PE=4 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 1.926e-73
Identity = 133/194 (68.56%), Postives = 165/194 (85.05%), Query Frame = 1

Query:    1 MSNPIETHMKALNRILQYLKGTPGRELYFQKSHNQGIEVYTDSDWAGSLSDRKSTTGYCTFVWGNLVTWRSKKQSVVARSSAEAEFRAMAQGICEGIWLKRMLDEIKIPTNYTMRILCDNKAAISIAKNPVHHDRTKHVEIDKHFIKEKIDHEIISVNHISSNRQTADILTKALSRHTYETIRSNLGMIDIYHP 582
            M+NP E HMKA+ RILQYLK +PGR L+F+K+ ++ +EV+T +DWAGSL+ R+STTGYC++VWGNLVTWRSKKQSVVARSSAEAEF+AMA GICEG+WL+R L E+ I +N TM +LCDNKA ISIAKNPV HDRTKHVEID+HFIKEK++   I + +I S+RQT DILTKAL + TYE ++S LGM+DIY+P
Sbjct:  914 MNNPTERHMKAVCRILQYLKKSPGRGLHFKKTSSREVEVFTKADWAGSLTYRRSTTGYCSYVWGNLVTWRSKKQSVVARSSAEAEFKAMAHGICEGMWLQRKLKELGIISNSTMTVLCDNKATISIAKNPVQHDRTKHVEIDRHFIKEKLEGGTIXLMYIPSSRQTTDILTKALPKATYENMKSKLGMLDIYYP 1107

[Close]

BLAST of Ca_19057 vs. TrEMBL
Match: A5AQS6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006799 PE=4 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 3.286e-73
Identity = 129/193 (66.84%), Postives = 165/193 (85.49%), Query Frame = 1

Query:    1 MSNPIETHMKALNRILQYLKGTPGRELYFQKSHNQGIEVYTDSDWAGSLSDRKSTTGYCTFVWGNLVTWRSKKQSVVARSSAEAEFRAMAQGICEGIWLKRMLDEIKIPTNYTMRILCDNKAAISIAKNPVHHDRTKHVEIDKHFIKEKIDHEIISVNHISSNRQTADILTKALSRHTYETIRSNLGMIDIYH 579
            M+NP E HM A+ RIL+YLK TPG+ L+FQ++  + IE+++D+DWAGS++DR+ST+GYC+FVWGNLVTWRSKKQSVVARSSAEAEFRAMAQGICEGIWL R+L+E+++P  + M + CDN+AAISIAKNPVHHDRTKHVEID+HFIKEKI+  +  V++  +N QTADILTKAL+R  +E +   LGMI+IY+
Sbjct:  986 MNNPTEKHMTAVIRILRYLKMTPGKGLFFQRTTKKEIEIFSDADWAGSVTDRRSTSGYCSFVWGNLVTWRSKKQSVVARSSAEAEFRAMAQGICEGIWLNRLLEELRVPLKHPMVLYCDNQAAISIAKNPVHHDRTKHVEIDRHFIKEKIEEGVFKVSYTPTNCQTADILTKALARVNFEDLTEKLGMINIYN 1178

[Close]

BLAST of Ca_19057 vs. TrEMBL
Match: A5AP66_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042460 PE=4 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 3.286e-73
Identity = 129/193 (66.84%), Postives = 165/193 (85.49%), Query Frame = 1

Query:    1 MSNPIETHMKALNRILQYLKGTPGRELYFQKSHNQGIEVYTDSDWAGSLSDRKSTTGYCTFVWGNLVTWRSKKQSVVARSSAEAEFRAMAQGICEGIWLKRMLDEIKIPTNYTMRILCDNKAAISIAKNPVHHDRTKHVEIDKHFIKEKIDHEIISVNHISSNRQTADILTKALSRHTYETIRSNLGMIDIYH 579
            M+NP E HM A+ RIL+YLK TPG+ L+FQ++  + IE+++D+DWAGS++DR+ST+GYC+FVWGNLVTWRSKKQSVVARSSAEAEFRAMAQGICEGIWL R+L+E+++P  + M + CDN+AAISIAKNPVHHDRTKHVEID+HFIKEKI+  +  V++  +N QTADILTKAL+R  +E +   LGMI+IY+
Sbjct: 1093 MNNPTEKHMTAVIRILRYLKMTPGKGLFFQRTTKKEIEIFSDADWAGSVTDRRSTSGYCSFVWGNLVTWRSKKQSVVARSSAEAEFRAMAQGICEGIWLNRLLEELRVPLKHPMVLYCDNQAAISIAKNPVHHDRTKHVEIDRHFIKEKIEEGVFKVSYTPTNCQTADILTKALARVNFEDLTEKLGMINIYN 1285

[Close]

BLAST of Ca_19057 vs. TrEMBL
Match: A5BFQ4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020105 PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 9.560e-73
Identity = 128/193 (66.32%), Postives = 165/193 (85.49%), Query Frame = 1

Query:    1 MSNPIETHMKALNRILQYLKGTPGRELYFQKSHNQGIEVYTDSDWAGSLSDRKSTTGYCTFVWGNLVTWRSKKQSVVARSSAEAEFRAMAQGICEGIWLKRMLDEIKIPTNYTMRILCDNKAAISIAKNPVHHDRTKHVEIDKHFIKEKIDHEIISVNHISSNRQTADILTKALSRHTYETIRSNLGMIDIYH 579
            M+NP + HM A+ RIL+YLK TPG+ L+FQ++  + IE+++D+DWAGS++DR+ST+GYC+FVWGNLVTWRSKKQSVVARSSAEAEFRAMAQGICEGIWL R+L+E+++P  + M + CDN+AAISIAKNPVHHDRTKHVEID+HFIKEKI+  +  V++  +N QTADILTKAL+R  +E +   LGMI+IY+
Sbjct:  448 MNNPTKKHMTAVIRILRYLKMTPGKGLFFQRTTKKEIEIFSDADWAGSVTDRRSTSGYCSFVWGNLVTWRSKKQSVVARSSAEAEFRAMAQGICEGIWLNRLLEELRVPLKHPMVLYCDNQAAISIAKNPVHHDRTKHVEIDRHFIKEKIEEGVFKVSYTPTNCQTADILTKALTRVNFEDLTEKLGMINIYN 640

[Close]

BLAST of Ca_19057 vs. TrEMBL
Match: A5B5M2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040578 PE=4 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 1.631e-72
Identity = 131/194 (67.53%), Postives = 165/194 (85.05%), Query Frame = 1

Query:    1 MSNPIETHMKALNRILQYLKGTPGRELYFQKSHNQGIEVYTDSDWAGSLSDRKSTTGYCTFVWGNLVTWRSKKQSVVARSSAEAEFRAMAQGICEGIWLKRMLDEIKIPTNYTMRILCDNKAAISIAKNPVHHDRTKHVEIDKHFIKEKIDHEIISVNHISSNRQTADILTKALSRHTYETIRSNLGMIDIYHP 582
            M+NP E HMKA+ RIL YLK +P R LYF+K+ ++ +EV+TD+DWAGSL++++STTGYC++VWGNLVTWRSKKQS+VARSSAE EFRAMA GICEG+WL+R+L E+ I +N TM +L DNKA ISIAKNPV HDRTKHVEID+HFIKEK++   I + +I S+RQTADILTKAL + TYE ++S LGM+DIY+P
Sbjct: 1159 MNNPTERHMKAVYRILXYLKKSPXRGLYFKKTSSREVEVFTDADWAGSLTNQRSTTGYCSYVWGNLVTWRSKKQSIVARSSAEVEFRAMAHGICEGMWLQRILKELGIISNSTMTVLRDNKATISIAKNPVQHDRTKHVEIDRHFIKEKLEGGTIRLMYIHSSRQTADILTKALPKATYENMKSKLGMLDIYYP 1352

[Close]

BLAST of Ca_19057 vs. TrEMBL
Match: A5ALJ9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034932 PE=4 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 2.130e-72
Identity = 128/193 (66.32%), Postives = 164/193 (84.97%), Query Frame = 1

Query:    1 MSNPIETHMKALNRILQYLKGTPGRELYFQKSHNQGIEVYTDSDWAGSLSDRKSTTGYCTFVWGNLVTWRSKKQSVVARSSAEAEFRAMAQGICEGIWLKRMLDEIKIPTNYTMRILCDNKAAISIAKNPVHHDRTKHVEIDKHFIKEKIDHEIISVNHISSNRQTADILTKALSRHTYETIRSNLGMIDIYH 579
            M+NP E  M A+ RIL+YLK TPG+ L+FQ++  + IE+++D+DWAGS++DR+ST+GYC+FVWGNLVTWRSKKQSVVARSSAEAEFRAMAQGICEGIWL R+L+E+++P  + M + CDN+AAISIAKNPVHHDRTKHVEID+HFIKEKI+  +  V++  +N QTADILTKAL+R  +E +   LGMI+IY+
Sbjct: 1070 MNNPTEKRMTAVIRILRYLKMTPGKGLFFQRTTKKEIEIFSDADWAGSVTDRRSTSGYCSFVWGNLVTWRSKKQSVVARSSAEAEFRAMAQGICEGIWLNRLLEELRVPLKHPMVLYCDNQAAISIAKNPVHHDRTKHVEIDRHFIKEKIEEGVFKVSYTPTNCQTADILTKALARGNFEDLTEKLGMINIYN 1262

[Close]

BLAST of Ca_19057 vs. TrEMBL
Match: A5B5H3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011263 PE=4 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 3.633e-72
Identity = 127/193 (65.80%), Postives = 165/193 (85.49%), Query Frame = 1

Query:    1 MSNPIETHMKALNRILQYLKGTPGRELYFQKSHNQGIEVYTDSDWAGSLSDRKSTTGYCTFVWGNLVTWRSKKQSVVARSSAEAEFRAMAQGICEGIWLKRMLDEIKIPTNYTMRILCDNKAAISIAKNPVHHDRTKHVEIDKHFIKEKIDHEIISVNHISSNRQTADILTKALSRHTYETIRSNLGMIDIYH 579
            M+NP E +M A+ RIL+YLK TPG+ L+FQ++  + IE+++++DWAGS++DR+ST+GYC+FVWGNLVTWRSKKQSVVARSSAEAEFRAMAQGICEGIWL R+L+E+++P  + M + CDN+AAISIAKNPVHHDRTKHVEID+HFIKEKI+  +  V++  +N QTADILTKAL+R  +E +   LGMI+IY+
Sbjct:  846 MNNPTEKYMTAVIRILRYLKMTPGKGLFFQRTTKKEIEIFSBADWAGSVTDRRSTSGYCSFVWGNLVTWRSKKQSVVARSSAEAEFRAMAQGICEGIWLNRLLEELRVPLKHPMVLYCDNQAAISIAKNPVHHDRTKHVEIDRHFIKEKIEXGVFKVSYTPTNCQTADILTKALARVNFEDLTEKLGMINIYN 1038

[Close]

BLAST of Ca_19057 vs. DB:Swiss
Match: POLR1_ARATH (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.211e-43
Identity = 76/191 (39.79%), Postives = 111/191 (58.12%), Query Frame = 1

Query:    1 MSNPIETHMKALNRILQYLKGTPGRELYFQKSHNQGIEVYTDSDWAGSLSDRKSTTGYCTFVWGNLVTWRSKKQSVVARSSAEAEFRAMAQGICEGIWLKRMLDEIKIPTNYTMRILCDNKAAISIAKNPVHHDRTKHVEIDKHFIKEKIDHEIISVNHISSNRQTADILTKALSRHTYETIRSNLGMIDI 573
            M  P E H++AL RIL+YL GTP   ++ +K +   +  Y+D+DWAG   D  ST GY  ++  + ++W SKKQ  V RSS EAE+R++A    E  W+  +L E+ I       I CDN  A  +  NPV H R KH+ ID HFI+ ++    + V H+S++ Q AD LTK LSR  ++   S +G+  +
Sbjct: 1273 MHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFASKIGVTRV 1463

[Close]

BLAST of Ca_19057 vs. DB:Swiss
Match: POLR2_ARATH (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.273e-42
Identity = 73/191 (38.22%), Postives = 111/191 (58.12%), Query Frame = 1

Query:    1 MSNPIETHMKALNRILQYLKGTPGRELYFQKSHNQGIEVYTDSDWAGSLSDRKSTTGYCTFVWGNLVTWRSKKQSVVARSSAEAEFRAMAQGICEGIWLKRMLDEIKIPTNYTMRILCDNKAAISIAKNPVHHDRTKHVEIDKHFIKEKIDHEIISVNHISSNRQTADILTKALSRHTYETIRSNLGMIDI 573
            M  P + H  AL R+L+YL GTP   ++ +K +   +  Y+D+DWAG   D  ST GY  ++  + ++W SKKQ  V RSS EAE+R++A    E  W+  +L E+ I  ++   I CDN  A  +  NPV H R KH+ +D HFI+ ++    + V H+S++ Q AD LTK LSR  ++     +G+I +
Sbjct: 1256 MHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGVIKV 1446

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BLAST of Ca_19057 vs. DB:Swiss
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 4.499e-40
Identity = 77/181 (42.54%), Postives = 111/181 (61.33%), Query Frame = 1

Query:   34 LNRILQYLKGTPGRELYFQK--SHNQGIEVYTDSDWAGSLSDRKSTTGYCTFVWG-NLVTWRSKKQSVVARSSAEAEFRAMAQGICEGIWLKRMLDEIKIPTNYTMRILCDNKAAISIAKNPVHHDRTKHVEIDKHFIKEKIDHEIISVNHISSNRQTADILTKALSRHTYETIRSNLGMI 567
            L R+L+YLKGT   +L F+K  +    I  Y DSDWAGS  DRKSTTGY   ++  NL+ W +K+Q+ VA SS EAE+ A+ + + E +WLK +L  I I     ++I  DN+  ISIA NP  H R KH++I  HF +E++ + +I + +I +  Q ADI TK L    +  +R  LG++
Sbjct: 1221 LKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGLL 1401

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BLAST of Ca_19057 vs. DB:Swiss
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.165e-37
Identity = 75/188 (39.89%), Postives = 119/188 (63.30%), Query Frame = 1

Query:    1 MSNPIETHMKALNRILQYLKGTPGRELYFQKSHNQGIEVYTDSDWAGSLSDRKSTTGYCTFVWGNLVTWRSKKQSVVARSSAEAEFRAMAQGICEGIWLKRMLDEIKIPTNYTMRILCDNKAAISIAKNPVHHDRTKHVEIDKHFIKEKIDHEIISVNHISSNRQTADILTKALSRHTYETIRSNLGM 564
            + NP + H +A+  IL+YL+GT G  L F  S +  ++ YTD+D AG + +RKS+TGY     G  ++W+SK Q  VA S+ EAE+ A  +   E IWLKR L E+ +     + + CD+++AI ++KN ++H RTKH+++  H+I+E +D E + V  IS+N   AD+LTK + R+ +E  +  +GM
Sbjct: 1140 LENPGKEHWEAVKWILRYLRGTTGDCLCFGGS-DPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYV-VYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFELCKELVGM 1325

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BLAST of Ca_19057 vs. DB:Swiss
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 6.628e-23
Identity = 42/98 (42.86%), Postives = 60/98 (61.22%), Query Frame = 1

Query:    1 MSNPIETHMKALNRILQYLKGTPGRELYFQKSHNQGIEVYTDSDWAGSLSDRKSTTGYCTFVWGNLVTWRSKKQSVVARSSAEAEFRAMAQGICEGIW 294
            M  P       L R+L+Y+KGT    LY  K+    ++ + DSDWAG  S R+STTG+CTF+  N+++W +K+Q  V+RSS E E+RA+A    E  W
Sbjct:  128 MHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

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BLAST of Ca_19057 vs. DB:Swiss
Match: M240_ARATH (Uncharacterized mitochondrial protein AtMg00240 OS=Arabidopsis thaliana OX=3702 GN=AtMg00240 PE=4 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 1.709e-8
Identity = 20/55 (36.36%), Postives = 36/55 (65.45%), Query Frame = 1

Query:   22 HMKALNRILQYLKGTPGRELYFQKSHNQGIEVYTDSDWAGSLSDRKSTTGYCTFV 186
             M+A+ ++L Y+KGT G+ L++  + +  ++ + DSDWA     R+S TG+C+ V
Sbjct:   28 QMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFADSDWASCPDTRRSVTGFCSLV 82

The following BLAST results are available for this feature:

BLAST of Ca_19057 vs. SwissProt
BLAST of Ca_19057 vs. TrEMBL
BLAST of Ca_19057 vs. DB:Swiss

BLAST of Ca_19057 vs. SwissProt
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs Swissprot)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
COPIA_DROME	1.858e-34	42.54	Copia protein OS=Drosophila melanogaster GN=GIP PE...	[more]
POLX_TOBAC	5.975e-33	39.89	Retrovirus-related Pol polyprotein from transposon...	[more]
M810_ARATH	1.866e-18	42.86	Uncharacterized mitochondrial protein AtMg00810 OS...	[more]
YJ41B_YEAST	3.900e-8	26.97	Transposon Ty4-J Gag-Pol polyprotein OS=Saccharomy...	[more]
YH41B_YEAST	3.900e-8	26.97	Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomy...	[more]

BLAST of Ca_19057 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL)
Total hits: 25

Position :

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Match Name	E-value	Identity	Description
A5C0P1_VITVI	5.416e-76	70.62	Putative uncharacterized protein OS=Vitis vinifera...	[more]
A5B6M3_VITVI	6.621e-74	67.36	Putative uncharacterized protein OS=Vitis vinifera...	[more]
A5ALH5_VITVI	6.621e-74	68.56	Putative uncharacterized protein OS=Vitis vinifera...	[more]
A5AET3_VITVI	1.926e-73	68.56	Putative uncharacterized protein OS=Vitis vinifera...	[more]
A5AQS6_VITVI	3.286e-73	66.84	Putative uncharacterized protein OS=Vitis vinifera...	[more]
A5AP66_VITVI	3.286e-73	66.84	Putative uncharacterized protein OS=Vitis vinifera...	[more]
A5BFQ4_VITVI	9.560e-73	66.32	Putative uncharacterized protein OS=Vitis vinifera...	[more]
A5B5M2_VITVI	1.631e-72	67.53	Putative uncharacterized protein OS=Vitis vinifera...	[more]
A5ALJ9_VITVI	2.130e-72	66.32	Putative uncharacterized protein OS=Vitis vinifera...	[more]
A5B5H3_VITVI	3.633e-72	65.80	Putative uncharacterized protein OS=Vitis vinifera...	[more]

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BLAST of Ca_19057 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot)
Total hits: 6

Position :

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Match Name	E-value	Identity	Description
POLR1_ARATH	2.211e-43	39.79	Retrovirus-related Pol polyprotein from transposon...	[more]
POLR2_ARATH	3.273e-42	38.22	Retrovirus-related Pol polyprotein from transposon...	[more]
COPIA_DROME	4.499e-40	42.54	Copia protein OS=Drosophila melanogaster OX=7227 G...	[more]
POLX_TOBAC	1.165e-37	39.89	Retrovirus-related Pol polyprotein from transposon...	[more]
M810_ARATH	6.628e-23	42.86	Uncharacterized mitochondrial protein AtMg00810 OS...	[more]
M240_ARATH	1.709e-8	36.36	Uncharacterized mitochondrial protein AtMg00240 OS...	[more]

InterPro

Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	FAMILY NOT NAMED	coord: 1..194 score: 2.6
None	No IPR available	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 6..146 score: 1.9
None	No IPR available	SEG	seg	seg	coord: 24..42 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Ca4:21205937..21206524-
coding sequence from alignment at Ca4:21205937..21206524-

mRNA sequence

>Ca_19057_v1.0_kabuli ID=Ca_19057_v1.0_kabuli; Name=Ca_19057; organism=Cicer arietinum; type=mRNA; length=588bp
ATGTCCAACCCAATTGAGACTCACATGAAGGCTCTAAATAGAATCCTTCA
ATACCTAAAGGGTACACCTGGCCGCGAGCTCTATTTCCAAAAGAGCCACA
ACCAGGGAATTGAAGTTTATACCGACTCAGATTGGGCAGGGAGTTTATCT
GACAGGAAATCCACCACAGGCTATTGCACCTTTGTATGGGGAAACTTGGT
AACATGGAGAAGTAAGAAACAATCTGTGGTCGCTAGAAGTAGTGCAGAAG
CTGAATTCAGAGCTATGGCACAAGGAATTTGTGAAGGGATTTGGCTCAAA
CGAATGTTGGATGAGATCAAAATTCCTACTAACTACACTATGAGAATACT
TTGTGACAACAAGGCAGCTATAAGTATTGCAAAAAACCCGGTTCACCATG
ATAGAACAAAGCATGTGGAAATAGACAAACACTTCATTAAGGAGAAAATT
GATCATGAGATCATAAGTGTTAACCACATCTCATCAAACAGACAAACAGC
AGACATTCTAACAAAGGCACTTTCAAGGCACACATACGAAACTATCAGGT
CCAATCTGGGTATGATAGATATCTACCACCCAGATTGA

protein sequence of Ca_19057_v1.0_kabuli

>Ca_19057_v1.0_kabuli ID=Ca_19057_v1.0_kabuli; Name=Ca_19057_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=195bp
MSNPIETHMKALNRILQYLKGTPGRELYFQKSHNQGIEVYTDSDWAGSLS
DRKSTTGYCTFVWGNLVTWRSKKQSVVARSSAEAEFRAMAQGICEGIWLK
RMLDEIKIPTNYTMRILCDNKAAISIAKNPVHHDRTKHVEIDKHFIKEKI
DHEIISVNHISSNRQTADILTKALSRHTYETIRSNLGMIDIYHPD

mRNA from alignment at Ca4:21205937..21206524-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ca_19057_v1.0_kabuli ID=Ca_19057_v1.0_kabuli; Name=Ca_19057; organism=Cicer arietinum; type=mRNA; length=588bp; location=Sequence derived from: Ca4:21205937..21206524- (Cicer arietinum
ATGTCCAACCCAATTGAGACTCACATGAAGGCTCTAAATAGAATCCTTCA
ATACCTAAAGGGTACACCTGGCCGCGAGCTCTATTTCCAAAAGAGCCACA
ACCAGGGAATTGAAGTTTATACCGACTCAGATTGGGCAGGGAGTTTATCT
GACAGGAAATCCACCACAGGCTATTGCACCTTTGTATGGGGAAACTTGGT
AACATGGAGAAGTAAGAAACAATCTGTGGTCGCTAGAAGTAGTGCAGAAG
CTGAATTCAGAGCTATGGCACAAGGAATTTGTGAAGGGATTTGGCTCAAA
CGAATGTTGGATGAGATCAAAATTCCTACTAACTACACTATGAGAATACT
TTGTGACAACAAGGCAGCTATAAGTATTGCAAAAAACCCGGTTCACCATG
ATAGAACAAAGCATGTGGAAATAGACAAACACTTCATTAAGGAGAAAATT
GATCATGAGATCATAAGTGTTAACCACATCTCATCAAACAGACAAACAGC
AGACATTCTAACAAAGGCACTTTCAAGGCACACATACGAAACTATCAGGT
CCAATCTGGGTATGATAGATATCTACCACCCAGATTGA

Coding sequence (CDS) from alignment at Ca4:21205937..21206524-

>Ca_19057_v1.0_kabuli ID=Ca_19057_v1.0_kabuli; Name=Ca_19057; organism=Cicer arietinum; type=CDS; length=588bp; location=Sequence derived from: Ca4:21205937..21206524- (Cicer arietinum
ATGTCCAACCCAATTGAGACTCACATGAAGGCTCTAAATAGAATCCTTCA
ATACCTAAAGGGTACACCTGGCCGCGAGCTCTATTTCCAAAAGAGCCACA
ACCAGGGAATTGAAGTTTATACCGACTCAGATTGGGCAGGGAGTTTATCT
GACAGGAAATCCACCACAGGCTATTGCACCTTTGTATGGGGAAACTTGGT
AACATGGAGAAGTAAGAAACAATCTGTGGTCGCTAGAAGTAGTGCAGAAG
CTGAATTCAGAGCTATGGCACAAGGAATTTGTGAAGGGATTTGGCTCAAA
CGAATGTTGGATGAGATCAAAATTCCTACTAACTACACTATGAGAATACT
TTGTGACAACAAGGCAGCTATAAGTATTGCAAAAAACCCGGTTCACCATG
ATAGAACAAAGCATGTGGAAATAGACAAACACTTCATTAAGGAGAAAATT
GATCATGAGATCATAAGTGTTAACCACATCTCATCAAACAGACAAACAGC
AGACATTCTAACAAAGGCACTTTCAAGGCACACATACGAAACTATCAGGT
CCAATCTGGGTATGATAGATATCTACCACCCAGATTGA

Search form

Ca_19057, Ca_19057_v1.0_kabuli (mRNA) Cicer arietinum

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