Ca_23898, Ca_23898_v1.0_kabuli (mRNA) Cicer arietinum
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Ca_23898 vs. TrEMBL
Match: G7I4F2_MEDTR (Putative uncharacterized protein OS=Medicago truncatula GN=MTR_1g008680 PE=4 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 1.630e-24 Identity = 56/61 (91.80%), Postives = 59/61 (96.72%), Query Frame = 1 Query: 130 QKRKEKKTQETDIIHIDEHKKGKETIVPGPFGQQAVVITVEDDVHVDETKKTDKLGSGLHA 312 QKRKEKKTQETDIIHIDEHKKGKETIVPGPFGQQAVVI+VEDDVHVDE+KK+ KLG GLHA Sbjct: 38 QKRKEKKTQETDIIHIDEHKKGKETIVPGPFGQQAVVISVEDDVHVDESKKSKKLGHGLHA 98 HSP 2 Score: 105.916 bits (263), Expect = 4.909e-21 Identity = 54/80 (67.50%), Postives = 58/80 (72.50%), Query Frame = 1 Query: 166 IIHIDEHKKGKETIVPGPFGQQAVVITVEDDVHVDETKKTDKLGSGLHAKXXXXXXXXXXXXXQEAGASPG-HHQLENKS 402 IIHIDEHKKG ETI PGPFGQQAV I+VEDDVHVDE+KK++KLG GLHAK E G S G HHQLENKS Sbjct: 164 IIHIDEHKKGMETIAPGPFGQQAVAISVEDDVHVDESKKSEKLGHGLHAKSSSAEANHHNSNSLEVGTSHGHHHQLENKS 243 HSP 3 Score: 93.9745 bits (232), Expect = 1.930e-17 Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 1 Query: 166 IIHIDEHKKGKETIVPGPFGQQAVVITVEDDVHVDETKKTDKLGSGLHA 312 IIHIDEHKKGKETIVPGPFGQQAVVI+VEDDVHVDE+KK+ KLG GLHA Sbjct: 107 IIHIDEHKKGKETIVPGPFGQQAVVISVEDDVHVDESKKSKKLGHGLHA 155
BLAST of Ca_23898 vs. TrEMBL
Match: G7I4E5_MEDTR (Putative uncharacterized protein OS=Medicago truncatula GN=MTR_1g008620 PE=4 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 4.909e-21 Identity = 52/62 (83.87%), Postives = 56/62 (90.32%), Query Frame = 1 Query: 130 QKRKEKKTQETDIIHIDEHKKGKETIVPGPFGQQAVVITVEDDVHVDETKKTDKLGSGLHAK 315 QKRKE TQETDIIHIDEHKKGKETIVPGPFGQQAVVI+VEDDVHVDET+K +K GLHA+ Sbjct: 34 QKRKES-TQETDIIHIDEHKKGKETIVPGPFGQQAVVISVEDDVHVDETRKKEKFDHGLHAQ 94 HSP 2 Score: 104.76 bits (260), Expect = 1.094e-20 Identity = 53/79 (67.09%), Postives = 59/79 (74.68%), Query Frame = 1 Query: 169 IHIDEHKKGKETIVPGPFGQQAVVITVEDDVHVDETKKTDKLGSGLHAKXXXXXXXXXXXXXQEAGASPG-HHQLENKS 402 IHIDEHKKGKETI PGPFGQQAV I+VEDDVHVDE+KK++KLG GL+AK + GAS G HHQLENKS Sbjct: 100 IHIDEHKKGKETIAPGPFGQQAVAISVEDDVHVDESKKSEKLGHGLYAKSSSAEANHHNSNSLDVGASHGHHHQLENKS 178
BLAST of Ca_23898 vs. TrEMBL
Match: I1MAE8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2) HSP 1 Score: 95.1301 bits (235), Expect = 8.665e-18 Identity = 41/61 (67.21%), Postives = 53/61 (86.89%), Query Frame = 1 Query: 133 KRKEKKTQETDIIHIDEHKKGKETIVPGPFGQQAVVITVEDDVHVDETKKTDKLGSGLHAK 315 +R++KKTQET+++H DEH+ KETIVPGPFG+ VV+TVEDDVH+DE KT+K+G GLHAK Sbjct: 144 QRRKKKTQETEVLHFDEHQTVKETIVPGPFGRNTVVVTVEDDVHIDEEIKTEKVGHGLHAK 204
BLAST of Ca_23898 vs. TrEMBL
Match: I1MAE9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 4.300e-17 Identity = 52/100 (52.00%), Postives = 62/100 (62.00%), Query Frame = 1 Query: 133 KRKEKKTQETDIIHIDEHKKGKETIVPGPFGQQAVVITVEDDVHVDE--TKKTDKLGSGLHAK-XXXXXXXXXXXXXQEAGASP--------GHHQLENK 399 +R++KKTQET++IH DEHK KETIVPGPFG+ VV+TVEDDVH+DE KK +K G GLHAK E A+P HHQ ENK Sbjct: 144 QRRKKKTQETEVIHFDEHKTVKETIVPGPFGRNTVVVTVEDDVHIDEEIKKKNEKGGHGLHAKSSSPEADQGTSSSIVEVAATPPPPENHDDHHHQPENK 243
BLAST of Ca_23898 vs. TrEMBL
Match: M5VIZ2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb021634mg PE=4 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 4.920e-13 Identity = 39/64 (60.94%), Postives = 51/64 (79.69%), Query Frame = 1 Query: 130 QKRKEKKTQETDIIHIDEHKKGKETIVPGPFGQQAVVITVEDDVHVD-ETKKTDKLG-SGLHAK 315 ++RK+K QETDIIHID+H+K KE IV GP+G QAVV++VEDDVH+D E +K + +G GLH K Sbjct: 120 KRRKKKTIQETDIIHIDKHRKIKEKIVEGPYGPQAVVLSVEDDVHIDEEIRKNETIGHKGLHGK 183 HSP 2 Score: 72.4034 bits (176), Expect = 6.015e-11 Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = 1 Query: 157 ETDIIHIDEHKKGKETIVPGPFGQQAVVITVEDDVHVDE-TKKTDKLGSGLHA 312 ET+II+ DEHKK KE IV GP+G +AVV+T+EDDVH+DE +K +++G GLHA Sbjct: 192 ETEIINFDEHKKVKEDIVGGPYGSKAVVLTIEDDVHMDEVVRKNERVGKGLHA 244
BLAST of Ca_23898 vs. TrEMBL
Match: F6H0A1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g15510 PE=4 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 5.440e-12 Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 1 Query: 130 QKRKEKKTQETDIIHIDEHKKGKETIVPGPFGQQAVVITVEDDVHV-DETKKTDKLGSG-LHAK 315 +KRK+K QETDII +DEH KE IVPGP G+QAVV+ V+DDVH+ +E +K +K G G LH K Sbjct: 98 KKRKKKMVQETDIIKVDEHLTVKEAIVPGPHGEQAVVLFVDDDVHIQEEIRKNEKFGQGHLHGK 161 HSP 2 Score: 70.8626 bits (172), Expect = 1.750e-10 Identity = 31/59 (52.54%), Postives = 44/59 (74.58%), Query Frame = 1 Query: 142 EKKTQETDIIHIDEHKKGKETIVPGPFGQQAVVITVEDDVHV-DETKKTDKLGSGLHAK 315 +K QET+II +DEH K KE ++ GP G+Q V++T EDDVH+ +E +K +K+G GLH K Sbjct: 245 KKMVQETEIIDVDEHSKVKEGVIAGPHGEQVVLLTEEDDVHIQEEIRKNEKIGEGLHGK 303 HSP 3 Score: 65.0846 bits (157), Expect = 9.603e-9 Identity = 28/61 (45.90%), Postives = 44/61 (72.13%), Query Frame = 1 Query: 136 RKEKKTQETDIIHIDEHKKGKETIVPGPFGQQAVVITVEDDVHV-DETKKTDKLGSGLHAK 315 +K+ QET+++++DEH K KE ++ GP G QA+ + +EDD H+ +E +K +KLG GLH K Sbjct: 172 KKKNMVQETEMVNVDEHLKVKEAMLAGPHGAQALALCMEDDKHIHEEIQKNEKLGEGLHGK 232
BLAST of Ca_23898 vs. TrEMBL
Match: F6H0A0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g15470 PE=4 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 5.440e-12 Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 1 Query: 130 QKRKEKKTQETDIIHIDEHKKGKETIVPGPFGQQAVVITVEDDVHV-DETKKTDKLGSG-LHAK 315 +KRK+K QETDII +DEH KE IVPGP G+QAVV+ V+DDVH+ +E +K +K G G LH K Sbjct: 147 KKRKKKMVQETDIIKVDEHLTVKEAIVPGPHGEQAVVLFVDDDVHIQEEIRKNEKFGQGHLHGK 210 HSP 2 Score: 71.633 bits (174), Expect = 1.026e-10 Identity = 31/58 (53.45%), Postives = 43/58 (74.14%), Query Frame = 1 Query: 145 KKTQETDIIHIDEHKKGKETIVPGPFGQQAVVITVEDDVHV-DETKKTDKLGSGLHAK 315 K QET+II +DEH K KE ++ GP G+Q V++T EDDVH+ +E +K +K+G GLH K Sbjct: 435 KMVQETEIIDVDEHSKAKEGVIAGPHGEQVVLLTEEDDVHIQEEIRKNEKIGEGLHGK 492 HSP 3 Score: 66.6254 bits (161), Expect = 3.300e-9 Identity = 29/61 (47.54%), Postives = 44/61 (72.13%), Query Frame = 1 Query: 136 RKEKKTQETDIIHIDEHKKGKETIVPGPFGQQAVVITVEDDVHV-DETKKTDKLGSGLHAK 315 +K+ QET+++++DEH K KE ++ GP G QA+ + +EDD H+ +E KK +KLG GLH K Sbjct: 221 KKKNMVQETEMVNVDEHLKVKEAMLAGPHGAQALALCMEDDKHIHEEIKKNEKLGEGLHGK 281 HSP 4 Score: 59.3066 bits (142), Expect = 5.269e-7 Identity = 29/59 (49.15%), Postives = 41/59 (69.49%), Query Frame = 1 Query: 142 EKKTQETDIIHIDEHKKGKETIVPGPFGQQAVVITVEDDVHV-DETKKTDKLGSGLHAK 315 +K QET+II +DEH K KE ++ P G QA+ + +EDD H+ +E +K +KLG GLH K Sbjct: 294 KKMVQETEIIDVDEHSKVKEAML-APHGAQALALCMEDDKHIHEEIQKNEKLGEGLHGK 351 HSP 5 Score: 59.3066 bits (142), Expect = 5.269e-7 Identity = 29/59 (49.15%), Postives = 41/59 (69.49%), Query Frame = 1 Query: 142 EKKTQETDIIHIDEHKKGKETIVPGPFGQQAVVITVEDDVHV-DETKKTDKLGSGLHAK 315 +K QET+II +DEH K KE ++ P G QA+ + +EDD H+ +E +K +KLG GLH K Sbjct: 364 KKMVQETEIIDVDEHSKVKEAML-APHGAQALALCMEDDKHIHEEIQKNEKLGEGLHGK 421
BLAST of Ca_23898 vs. TrEMBL
Match: B9GTM7_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_754489 PE=4 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 9.279e-12 Identity = 39/93 (41.94%), Postives = 57/93 (61.29%), Query Frame = 1 Query: 130 QKRKEKKTQETDIIHIDEHKKGKETIVPGPFGQQAVVITVEDDVHV-DETKKTDKLGSGLHAK-XXXXXXXXXXXXXQEAGASPGHHQLENKS 402 +K+K+K +ETDI+H+ EH K KE IV GP G +AVV+ + DDVH+ +E K+ +K+G GLHAK + S H +LE+K+ Sbjct: 81 KKKKKKTVEETDIVHVHEHLKVKEAIVEGPHGPKAVVLEIVDDVHIGEEIKEEEKVGEGLHAKAIEGNAGTVDQLAAPSSSGSNNHSRLEHKA 173
BLAST of Ca_23898 vs. TrEMBL
Match: B9SJJ3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0138540 PE=4 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.212e-11 Identity = 40/93 (43.01%), Postives = 55/93 (59.14%), Query Frame = 1 Query: 133 KRKEKKTQETDIIHIDEHKKGKETIVPGPFGQQAVVITVEDDVHVDET---KKTDKLGSGLHAKXXXXXXXXXXXXXQEAGASPGHHQLENKS 402 K+++K+ QETD+I +DEH K KE IV GP G Q+VV+ +EDDVHV+E +K + G GLH + AS H QL+NK+ Sbjct: 76 KKRKKRVQETDVIQVDEHLKVKEAIVEGPNGPQSVVLQIEDDVHVNEVIKKQKEENFGDGLH---NAKNKSLEIGALPSSSASSTHSQLQNKA 165
BLAST of Ca_23898 vs. TrEMBL
Match: A5ANC6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033269 PE=4 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.026e-10 Identity = 31/58 (53.45%), Postives = 43/58 (74.14%), Query Frame = 1 Query: 145 KKTQETDIIHIDEHKKGKETIVPGPFGQQAVVITVEDDVHV-DETKKTDKLGSGLHAK 315 K QET+II +DEH K KE ++ GP G+Q V++T EDDVH+ +E +K +K+G GLH K Sbjct: 213 KMVQETEIIDVDEHSKAKEGVIAGPHGEQVVLLTEEDDVHIQEEIRKNEKIGEGLHGK 270 HSP 2 Score: 67.781 bits (164), Expect = 1.481e-9 Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 1 Query: 154 QETDIIHIDEHKKGKETIVPGPFGQQAVVITVEDDVHV-DETKKTDKLGSG-LHAK 315 QETDII +DEH KE IVPGP G+QAVV+ V+DDVH+ +E +K +K G G LH K Sbjct: 3 QETDIIKVDEHLTVKEAIVPGPHGEQAVVLFVDDDVHIQEEIRKNEKFGQGHLHGK 58 HSP 3 Score: 65.0846 bits (157), Expect = 9.603e-9 Identity = 28/61 (45.90%), Postives = 44/61 (72.13%), Query Frame = 1 Query: 136 RKEKKTQETDIIHIDEHKKGKETIVPGPFGQQAVVITVEDDVHV-DETKKTDKLGSGLHAK 315 +K+ QET+++++DEH K KE ++ GP G QA+ + +EDD H+ +E +K +KLG GLH K Sbjct: 69 KKKNMVQETEMVNVDEHLKVKEAMLAGPHGAQALALCMEDDKHIHEEIQKNEKLGEGLHGK 129 HSP 4 Score: 59.3066 bits (142), Expect = 5.269e-7 Identity = 29/59 (49.15%), Postives = 41/59 (69.49%), Query Frame = 1 Query: 142 EKKTQETDIIHIDEHKKGKETIVPGPFGQQAVVITVEDDVHV-DETKKTDKLGSGLHAK 315 +K QET+II +DEH K KE ++ P G QA+ + +EDD H+ +E +K +KLG GLH K Sbjct: 142 KKMVQETEIIDVDEHSKVKEAML-APHGAQALALCMEDDKHIHEEIQKNEKLGEGLHGK 199 The following BLAST results are available for this feature:
BLAST of Ca_23898 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL) Total hits: 16
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BLAST of Ca_23898 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot) Total hits: 0
Expression
Available Analyses Select an Expression Analysis Select a property to group and sort biological samples Select a property to color biological samples Hover the mouse over a column in the graph to view more information about that biological sample. You can click and drag to rearrange groups along the x-axis. You can also click and drag to move the legend. InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
Sequences
The
following sequences are available for this feature:
mRNA sequence >Ca_23898_v1.0_kabuli ID=Ca_23898_v1.0_kabuli; Name=Ca_23898; organism=Cicer arietinum; type=mRNA; length=405bpback to top protein sequence of Ca_23898_v1.0_kabuli >Ca_23898_v1.0_kabuli ID=Ca_23898_v1.0_kabuli; Name=Ca_23898_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=134bpback to top mRNA from alignment at Ca4:40842152..40842556- Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.>Ca_23898_v1.0_kabuli ID=Ca_23898_v1.0_kabuli; Name=Ca_23898; organism=Cicer arietinum; type=mRNA; length=405bp; location=Sequence derived from: Ca4:40842152..40842556- (Cicer arietinumback to top Coding sequence (CDS) from alignment at Ca4:40842152..40842556- >Ca_23898_v1.0_kabuli ID=Ca_23898_v1.0_kabuli; Name=Ca_23898; organism=Cicer arietinum; type=CDS; length=405bp; location=Sequence derived from: Ca4:40842152..40842556- (Cicer arietinumback to top |