Ca_01479, Ca_01479_v1.0_kabuli (mRNA) Cicer arietinum

Transcript Overview
NameCa_01479
Unique NameCa_01479_v1.0_kabuli
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length294
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca5chromosomeCa5:37396808..37397101 -Cicer arietinum CDC Frontier genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum CDC Frontier genome v1.02013-01-01
InterProScan analysis for kabuli C. arietinum unigenes2013-10-24
Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL2013-10-24
BLAST: C. arietinum CDC Frontier (kabuli), Swissprot2019-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
capsR371Pisum sativum Cameor genome v1aPisum sativum
capsR381Pisum sativum Cameor genome v1aPisum sativum
capsR402Pisum sativum Cameor genome v1aPisum sativum
cavuR390Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
cavuR412Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
cavuR446Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
capvR476Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
capvR514Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caccR0644Cajanus cajan Asha genome v1.0Cajanus cajan
ancaL0189Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0333Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0343Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0386Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0397Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0644Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0770Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL1213Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
cazwsR337Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
cazwsR353Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
catifR373Vicia faba cv. Tiffany genome v1.0Vicia faba
catifR400Vicia faba cv. Tiffany genome v1.0Vicia faba
cavfhR375Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavfhR402Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavrvR425Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavssR440Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavssR472Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavuaR371Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cavuaR402Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cavuaR415Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cacanR169Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cacanR189Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cacarR362Cicer arietinum
cacarR393Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
Psat5g049120.1Pisum sativum Cameor genome v1aPisum sativum
Vfaba.Tiffany.R1.2g129640.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vfaba.Hedin2.R1.2g160560.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-TanjilR_32509Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-TanjilR_12602Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-KK1_031112Cajanus cajan Asha genome v1.0Cajanus cajan
evm.model.Chr08.1733Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
jg54783.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Psat05G0160500-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vigun08g109100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Phvul.008G182300.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-XM_004501598.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_01479-CDS1Ca_01479-CDS1Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_01479_v1.0_kabuliCa_01479_v1.0_kabuliCicer arietinumpolypeptide


Homology
BLAST of Ca_01479 vs. TrEMBL
Match: G7IN16_MEDTR (Taxadien-5-alpha-ol O-acetyltransferase OS=Medicago truncatula GN=MTR_2g036780 PE=4 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 2.476e-33
Identity = 74/105 (70.48%), Postives = 82/105 (78.10%), Query Frame = 1
Query:    1 MNENHVLEKFEEEG--------YGAKLTFVDLEESEFYGVKLNGKKPIMTNCDFRGVGDQGVVLVLPAPQDDDDDGNNGRMITVSLPGNELNQMKSKLAREWGIQ 291
            +NEN+ LEK  E+G        YGAKLTFVDLEE++ YGVKLNGKKPI  NCD RGVGDQGVVLV P P  +DDDGNNGRMI VSLPG EL+Q+K KL REWGIQ
Sbjct:  333 INENYALEKLVEKGDGKDDFFVYGAKLTFVDLEEADLYGVKLNGKKPIRANCDLRGVGDQGVVLVFPGP--EDDDGNNGRMIKVSLPGKELDQLKYKLEREWGIQ 435          
BLAST of Ca_01479 vs. TrEMBL
Match: G7J4L2_MEDTR (Omega-hydroxypalmitate O-feruloyl transferase OS=Medicago truncatula GN=MTR_3g100150 PE=4 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 7.456e-30
Identity = 68/99 (68.69%), Postives = 78/99 (78.79%), Query Frame = 1
Query:    1 MNENHVLEKFEEEG--------YGAKLTFVDLEESEFYGVKLNGKKPIMTNCDFRGVGDQGVVLVLPAPQDDDDDGNNGRMITVSLPGNELNQMKSKLA 273
            MNENH LEK  EEG        YGAKLTFVDLEE  FYGVK+NG+KPI+ NCDFRGVGDQGVVLVL  P  +D +GNNGRM+T+SLPG EL+Q+K KL+
Sbjct:  333 MNENHGLEKMMEEGEGKDDFIVYGAKLTFVDLEEGNFYGVKINGQKPILANCDFRGVGDQGVVLVLSGP--EDYNGNNGRMVTISLPGKELDQLKCKLS 429          
BLAST of Ca_01479 vs. TrEMBL
Match: I1K9R7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 5.001e-26
Identity = 66/105 (62.86%), Postives = 77/105 (73.33%), Query Frame = 1
Query:    1 MNENHVLEKFEE--EG------YGAKLTFVDLEESEFY-GVKLNGKKPIMTNCDFRGVGDQGVVLVLPAPQDDDDDGNNGRMITVSLPGNELNQMKSKLAREWGI 288
            M ENHV+EK  E  EG      YG  LTFV+LEE+  Y G+ LNG+KPIM NC FRGV D+GVVLVLPAP +DD+DG NGR++TVSLP  EL Q+K KL  EWGI
Sbjct:  340 MVENHVMEKLVEADEGKEDFIVYGVNLTFVNLEEANIYDGMNLNGQKPIMANCTFRGVSDKGVVLVLPAP-EDDEDGGNGRIVTVSLPREELYQLKDKLGGEWGI 443          
BLAST of Ca_01479 vs. TrEMBL
Match: I1JH08_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.043e-23
Identity = 58/101 (57.43%), Postives = 70/101 (69.31%), Query Frame = 1
Query:    7 ENHVLEKFEEEG--------YGAKLTFVDLEESEFYGVKLNGKKPIMTNCDFRGVGDQGVVLVLPAPQDDDDDGNNGRMITVSLPGNELNQMKSKLAREWG 285
            EN V+EK  EE         YGA LTFVDLEE + Y V LNG KP++TNC   GVGDQGVVLVLP  +D+++  N GRM+TVSLP  E++Q+K KL  EWG
Sbjct:  337 ENVVVEKLVEESQGKGDFVVYGANLTFVDLEEGDMYEVVLNGHKPVVTNCSIHGVGDQGVVLVLPGLEDEENGRNIGRMVTVSLPEKEVDQLKEKLRGEWG 437          
BLAST of Ca_01479 vs. TrEMBL
Match: M5XQ19_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006117mg PE=4 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.838e-18
Identity = 45/82 (54.88%), Postives = 61/82 (74.39%), Query Frame = 1
Query:   43 YGAKLTFVDLEESEFYGVKLNGKKPIMTNCDFRGVGDQGVVLVLPAPQDDDDDGN--NGRMITVSLPGNELNQMKSKLAREW 282
            YGA LTFV+LEE+E YG++L G+KP+  N    GVGD+GVVLVLP P+   ++ N   GR++TV LP NE+ Q+K++L REW
Sbjct:  342 YGANLTFVNLEEAEIYGLELKGQKPVYANYSINGVGDEGVVLVLPGPKYGKEEANIHGGRLVTVVLPENEVAQLKTELQREW 423          
BLAST of Ca_01479 vs. TrEMBL
Match: K7KJ60_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 6.547e-18
Identity = 57/105 (54.29%), Postives = 67/105 (63.81%), Query Frame = 1
Query:    1 MNENHVLEKFEE--EG------YGAKLTFVDLEESEFY-GVKLNGKKPIMTNCDFRGVGDQGVVLVLPAPQDDDDDGNNGRMITVSLPGNELNQMKSKLAREWGI 288
            M ENHV+E+  E  EG      YG  LTFV+LEE+  Y GVKLN +KPIM NC FRGV DQG           + DGN GR++TVSLP  EL+Q+K KL  EWGI
Sbjct:  188 MVENHVMEELVEGDEGREDFIAYGVNLTFVNLEEANIYDGVKLNEQKPIMANCTFRGVSDQG-----------EHDGN-GRIVTVSLPHEELDQLKDKLGEEWGI 280          
BLAST of Ca_01479 vs. TrEMBL
Match: F6GWE4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0029g00480 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.488e-17
Identity = 43/83 (51.81%), Postives = 62/83 (74.70%), Query Frame = 1
Query:   43 YGAKLTFVDLEESEFYGVKLNGKKPIMTNCDFRGVGDQGVVLVL-PAPQDDDDDGNNGRMITVSLPGNELNQMKSKLAREWGI 288
            YGA LTFV+LEE+ FYG++LNG+KP+  +    G+GD+GVVLV  P P+D   D N G+++TV LP +++ ++KS+L REW I
Sbjct:  352 YGANLTFVNLEEASFYGLELNGQKPVHVSYLIDGIGDEGVVLVAPPGPKDSGKDSNEGKIVTVILPEDQVMELKSELKREWSI 434          
BLAST of Ca_01479 vs. TrEMBL
Match: A5BTN3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003221 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.488e-17
Identity = 43/83 (51.81%), Postives = 62/83 (74.70%), Query Frame = 1
Query:   43 YGAKLTFVDLEESEFYGVKLNGKKPIMTNCDFRGVGDQGVVLVL-PAPQDDDDDGNNGRMITVSLPGNELNQMKSKLAREWGI 288
            YGA LTFV+LEE+ FYG++LNG+KP+  +    G+GD+GVVLV  P P+D   D N G+++TV LP +++ ++KS+L REW I
Sbjct:  229 YGANLTFVNLEEASFYGLELNGQKPVHVSYLIDGIGDEGVVLVAPPGPKDSGKDSNEGKIVTVILPEDQVMELKSELKREWSI 311          
BLAST of Ca_01479 vs. TrEMBL
Match: B9H6U6_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_558994 PE=4 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.128e-16
Identity = 42/89 (47.19%), Postives = 62/89 (69.66%), Query Frame = 1
Query:   25 KFEEEGYGAKLTFVDLEESEFYGVKLNGKKPIMTNCDFRGVGDQGVVLVLPA-PQDDDDDGNNGRMITVSLPGNELNQMKSKLAREWGI 288
            +F+   YG  LTFVDLEE+  YG++L G+KPI  N   +GVG+ GVVLVLPA P +     ++GR +TV+LP N+L+++ ++L   WG+
Sbjct:  347 EFDRIAYGTNLTFVDLEEANIYGLELKGQKPIFANYSIKGVGEGGVVLVLPAGPGNGSGKVSSGRTVTVTLPENQLSRLMNELKLHWGL 435          
BLAST of Ca_01479 vs. TrEMBL
Match: B9TB76_RICCO (Transferase, putative OS=Ricinus communis GN=RCOM_0345770 PE=4 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 8.848e-15
Identity = 38/76 (50.00%), Postives = 55/76 (72.37%), Query Frame = 1
Query:   43 YGAKLTFVDLEESEFYGVKLNGKKPIMTNCDFRGVGDQGVVLVLPAPQDDDDDGNNGRMITVSLPGNELNQMKSKL 270
            YGA LTF++LEE+  YG++  G KPI  +   +GVGD+G V+VLP P+DD   G+ GR++TV LP  E+ ++KS+L
Sbjct:  228 YGANLTFLNLEEANIYGLEWKGNKPIFVHYSIQGVGDEGAVIVLPWPEDDGKRGDTGRVVTVILPEKEMIELKSEL 303          
BLAST of Ca_01479 vs. DB:Swiss
Match: CER2_ARATH (Protein ECERIFERUM 2 OS=Arabidopsis thaliana OX=3702 GN=CER2 PE=1 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 6.613e-11
Identity = 31/77 (40.26%), Postives = 47/77 (61.04%), Query Frame = 1
Query:   43 YGAKLTFVDLEESEFYGVKLNGKKPIMTNCDFRGVGDQGVVLVLPAPQDDDDDGNNGRMITVSLPGNELNQMKSKLA 273
            YGA LTFV+L+E + Y +++NG KP   N    GVGD+GVVLV P         N  R+++V +P  +L ++K ++ 
Sbjct:  348 YGANLTFVNLDEIDMYELEINGGKPDFVNYTIHGVGDKGVVLVFPKQ-------NFARIVSVVMPEEDLAKLKEEVT 417          
BLAST of Ca_01479 vs. DB:Swiss
Match: CER26_ARATH (Protein ECERIFERUM 26 OS=Arabidopsis thaliana OX=3702 GN=CER26 PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.626e-10
Identity = 28/78 (35.90%), Postives = 48/78 (61.54%), Query Frame = 1
Query:   43 YGAKLTFVDLEESEFYGVKLNGKKPIMTNCDFRGVGDQGVVLVLPAPQDDDDDGNNGRMITVSLPGNELNQMKSKLAR 276
            YGAKLTF+DL   + Y  K+ GK P    C+  G+G++G+V+V  A + ++      R++TV+LP  E+ ++K +  +
Sbjct:  351 YGAKLTFLDLTGEDLYEAKVMGKSPESVYCNVEGIGEEGLVVVYAAAKSEE------RVVTVTLPEEEMERVKLEFKK 422          
BLAST of Ca_01479 vs. DB:Swiss
Match: CR26L_ARATH (Protein ECERIFERUM 26-like OS=Arabidopsis thaliana OX=3702 GN=CER26L PE=2 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 1.412e-9
Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 1
Query:   43 YGAKLTFVDLEESEFYGVKLNGKKPIMTNCDFRGVGDQGVVLVLPA 180
            YGA LTFVD+ E +FY  K+ GK P    C+ +G+GD G V+VLP 
Sbjct:  341 YGANLTFVDMSEVDFYEAKVMGKSPESVYCNVQGIGDDGAVVVLPG 386          
The following BLAST results are available for this feature:
BLAST of Ca_01479 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
G7IN16_MEDTR2.476e-3370.48Taxadien-5-alpha-ol O-acetyltransferase OS=Medicag... [more]
G7J4L2_MEDTR7.456e-3068.69Omega-hydroxypalmitate O-feruloyl transferase OS=M... [more]
I1K9R7_SOYBN5.001e-2662.86Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
I1JH08_SOYBN1.043e-2357.43Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
M5XQ19_PRUPE3.838e-1854.88Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
K7KJ60_SOYBN6.547e-1854.29Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
F6GWE4_VITVI2.488e-1751.81Putative uncharacterized protein OS=Vitis vinifera... [more]
A5BTN3_VITVI2.488e-1751.81Putative uncharacterized protein OS=Vitis vinifera... [more]
B9H6U6_POPTR6.128e-1647.19Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9TB76_RICCO8.848e-1550.00Transferase, putative OS=Ricinus communis GN=RCOM_... [more]

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BLAST of Ca_01479 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot)
Total hits: 3
Match NameE-valueIdentityDescription
CER2_ARATH6.613e-1140.26Protein ECERIFERUM 2 OS=Arabidopsis thaliana OX=37... [more]
CER26_ARATH1.626e-1035.90Protein ECERIFERUM 26 OS=Arabidopsis thaliana OX=3... [more]
CR26L_ARATH1.412e-952.17Protein ECERIFERUM 26-like OS=Arabidopsis thaliana... [more]
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InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 20..26
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_01479_v1.0_kabuli ID=Ca_01479_v1.0_kabuli; Name=Ca_01479; organism=Cicer arietinum; type=mRNA; length=294bp
ATGAATGAGAATCATGTATTGGAAAAATTTGAGGAGGAAGGTTATGGAGC
AAAGTTAACATTTGTAGACTTGGAAGAAAGTGAATTTTATGGGGTAAAGC
TTAATGGGAAAAAACCCATTATGACAAATTGCGATTTTCGTGGTGTGGGT
GATCAAGGAGTTGTTTTGGTTCTTCCAGCACCACAAGACGATGATGATGA
TGGTAATAATGGAAGAATGATTACAGTTTCTTTGCCTGGAAATGAACTCA
ACCAAATGAAATCTAAGCTAGCAAGAGAATGGGGTATACAATAA
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protein sequence of Ca_01479_v1.0_kabuli

>Ca_01479_v1.0_kabuli ID=Ca_01479_v1.0_kabuli; Name=Ca_01479_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=97bp
MNENHVLEKFEEEGYGAKLTFVDLEESEFYGVKLNGKKPIMTNCDFRGVG
DQGVVLVLPAPQDDDDDGNNGRMITVSLPGNELNQMKSKLAREWGIQ
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mRNA from alignment at Ca5:37396808..37397101-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_01479_v1.0_kabuli ID=Ca_01479_v1.0_kabuli; Name=Ca_01479; organism=Cicer arietinum; type=mRNA; length=294bp; location=Sequence derived from: Ca5:37396808..37397101- (Cicer arietinum
ATGAATGAGAATCATGTATTGGAAAAATTTGAGGAGGAAGGTTATGGAGC AAAGTTAACATTTGTAGACTTGGAAGAAAGTGAATTTTATGGGGTAAAGC TTAATGGGAAAAAACCCATTATGACAAATTGCGATTTTCGTGGTGTGGGT GATCAAGGAGTTGTTTTGGTTCTTCCAGCACCACAAGACGATGATGATGA TGGTAATAATGGAAGAATGATTACAGTTTCTTTGCCTGGAAATGAACTCA ACCAAATGAAATCTAAGCTAGCAAGAGAATGGGGTATACAATAA
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Coding sequence (CDS) from alignment at Ca5:37396808..37397101-

>Ca_01479_v1.0_kabuli ID=Ca_01479_v1.0_kabuli; Name=Ca_01479; organism=Cicer arietinum; type=CDS; length=294bp; location=Sequence derived from: Ca5:37396808..37397101- (Cicer arietinum
ATGAATGAGAATCATGTATTGGAAAAATTTGAGGAGGAAGGTTATGGAGC
AAAGTTAACATTTGTAGACTTGGAAGAAAGTGAATTTTATGGGGTAAAGC
TTAATGGGAAAAAACCCATTATGACAAATTGCGATTTTCGTGGTGTGGGT
GATCAAGGAGTTGTTTTGGTTCTTCCAGCACCACAAGACGATGATGATGA
TGGTAATAATGGAAGAATGATTACAGTTTCTTTGCCTGGAAATGAACTCA
ACCAAATGAAATCTAAGCTAGCAAGAGAATGGGGTATACAATAA
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