Ca_01645, Ca_01645_v1.0_kabuli (mRNA) Cicer arietinum

Transcript Overview
NameCa_01645
Unique NameCa_01645_v1.0_kabuli
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length681
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca5chromosomeCa5:35800570..35802677 +Cicer arietinum CDC Frontier genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
capsR381Pisum sativum Cameor genome v1aPisum sativum
capsR431Pisum sativum Cameor genome v1aPisum sativum
capsR434Pisum sativum Cameor genome v1aPisum sativum
cavuR434Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
capvR427Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
capvR512Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caccR0689Cajanus cajan Asha genome v1.0Cajanus cajan
ancaL0040Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0235Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0331Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0383Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0754Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaL553Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaL577Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaL748Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaL763Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cazwsR351Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
cazwsR353Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
cazwsR387Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
catifR400Vicia faba cv. Tiffany genome v1.0Vicia faba
catifR418Vicia faba cv. Tiffany genome v1.0Vicia faba
catifR431Vicia faba cv. Tiffany genome v1.0Vicia faba
cavfhR402Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavfhR420Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavfhR426Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavrvR410Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavrvR443Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavssR421Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavssR458Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavssR464Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavssR485Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavuaR386Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cavuaR421Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cacanR181Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cacanR189Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cacanR208Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjcaL278Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcaL546Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcaL747Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
cacarR374Cicer arietinum
cacarR393Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
jg55153.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-KK1_040234Cajanus cajan Asha genome v1.0Cajanus cajan
rna-TanjilR_30665Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
LR48_mrnaVigan04g233700Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vfaba.Tiffany.R1.2g140680.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Psat05G0124500-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vfaba.Hedin2.R1.2g174280.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-XM_004501396.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_01645-CDS1Ca_01645-CDS1Cicer arietinumCDS
Ca_01645-CDS2Ca_01645-CDS2Cicer arietinumCDS
Ca_01645-CDS3Ca_01645-CDS3Cicer arietinumCDS
Ca_01645-CDS4Ca_01645-CDS4Cicer arietinumCDS
Ca_01645-CDS5Ca_01645-CDS5Cicer arietinumCDS
Ca_01645-CDS6Ca_01645-CDS6Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_01645_v1.0_kabuliCa_01645_v1.0_kabuliCicer arietinumpolypeptide


Homology
[Close]
BLAST of Ca_01645 vs. SwissProt
Match: RU1A_ARATH (U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana GN=U1A PE=1 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 5.736e-7
Identity = 51/197 (25.89%), Postives = 78/197 (39.59%), Query Frame = 1 
Query:   52 TFSRTSYAGFIPSETPSLASPHPKSTDFPGYGSDY---LHKDVSLFRMEPYGVDDTRGSRVHSEHNATGYSHPEDPELSTKRDTPL-----GVNPGVPDLNNESMP---KSNYDAVPVTAAESNILFVGGLPKDCTRREVGHLFRPFIGYKDIKLVHKEPRRSGDKSMILCFVEFTEPKCALTAMEALQGYKFDDKK 609
            TF     A  +   T S ++   K  +FP Y  +      K  S    +  G    R  R   E    G    +    ST+   P+     GV    P L+    P   K N    P  A  +NILFV  LP + T   +  LF  + G+K+++++  +P         + FVEF +   +  AM+ LQG+K    +
Sbjct:   56 TFKHKGQAWVVFDNTESASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGGKKKKDQHHDSTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAP--APPNNILFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPG--------IAFVEFADEMQSTVAMQGLQGFKIQQNQ 242
[Close]
BLAST of Ca_01645 vs. TrEMBL
Match: G7J8B6_MEDTR (RNA-binding protein with multiple splicing OS=Medicago truncatula GN=MTR_3g104670 PE=4 SV=1)

HSP 1 Score: 401.749 bits (1031), Expect = 8.504e-110
Identity = 194/228 (85.09%), Postives = 210/228 (92.11%), Query Frame = 1 
Query:    1 MADPYHPYPTPAPSDGATFSRTSYAGFIPSETPSLASPHPKSTDFPGYGSDYLHKDVSLFRMEPYGVDDTRGSRVHSEHNATGYSHPEDPELSTKRDTPLGVNPGVPD--LNNE-SMPKSNYDAVPVTAAESNILFVGGLPKDCTRREVGHLFRPFIGYKDIKLVHKEPRRSGDKSMILCFVEFTEPKCALTAMEALQGYKFDDKKPDSSILKIQFAHFPFRPPTNDG 675
            M DPY+PYPTPAPSDGA+F+R+SYAG+IPSE PSLASP PKSTDFPGYGSDYL+KDVSLFRMEPYGVDDTRGSRVHSEHNAT Y+  ED +LSTKRD  LGV+ GVPD   NNE S+ KSNYDA+PV+AAESNILFVGGLPKDCTRREVGHLFRPFIGYKDIK+VHKEPRRSGDK+MI CFVEFTEPKCALTAMEALQGYKFDDKKPDS  LKI+FAHFPFRPPT+DG
Sbjct:    1 MTDPYYPYPTPAPSDGASFARSSYAGYIPSEAPSLASPLPKSTDFPGYGSDYLNKDVSLFRMEPYGVDDTRGSRVHSEHNATSYNPLEDVDLSTKRDALLGVSTGVPDPIANNERSISKSNYDALPVSAAESNILFVGGLPKDCTRREVGHLFRPFIGYKDIKVVHKEPRRSGDKAMIFCFVEFTEPKCALTAMEALQGYKFDDKKPDSPTLKIKFAHFPFRPPTDDG 228
[Close]
BLAST of Ca_01645 vs. TrEMBL
Match: I1K8E6_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 4.710e-76
Identity = 147/227 (64.76%), Postives = 174/227 (76.65%), Query Frame = 1 
Query:    1 MADPYHPYPTPAPSDGATFSRTSYAGFIPSETPSLASPHPKSTDFPGYGSDYLHKDVSLFRMEPYGVDDTRGSRVHSEHNATGYSHPEDPELSTKRDT-PLGVNPGVPDLNNES-MPKSNYDAVPVTAAESNILFVGGLPKDCTRREVGHLFRPFIGYKDIKLVHKEPRRSGDKSMILCFVEFTEPKCALTAMEALQGYKFDDKKPDSSILKIQFAHFPFRPPTNDG 675
            MADPY+ Y  PA +DGA+ +R+S+AG+IPSE      P   +T+    GSDYL +D+ LF    Y  DDT GSRVHSE    GYS   DP+ S KRDT PL +  GVPD+N+E    KS+YD +P++AA+SNILFVGGLP DCTRREVGHLFRPFIGYKDI++VHKEPRRSGDK+M LCFVEF + KCALTAMEALQGYKFDDKKPDS  LKI+FAHFPFR P++ G
Sbjct:    1 MADPYYSYGAPAAADGASIARSSFAGYIPSE------PSNSTTELRSIGSDYLQRDIGLF----YSADDTFGSRVHSEP-VKGYSPLADPDPSKKRDTTPLSITHGVPDVNSERPASKSSYDGLPISAADSNILFVGGLPNDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMTLCFVEFVDSKCALTAMEALQGYKFDDKKPDSPTLKIEFAHFPFRLPSDHG 216
[Close]
BLAST of Ca_01645 vs. TrEMBL
Match: I3T8X8_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 6.151e-76
Identity = 148/231 (64.07%), Postives = 178/231 (77.06%), Query Frame = 1 
Query:    1 MADPYHPYP--TPAPSDGATFSRTSYAGFIPSETPSLASPHPK---STDFPGYGSDYLHKDVSLFRMEPYG-VDDTRGSRVHSEHNATGYSHPEDPELSTKRDTPLGVNPGVPDLNNESMPKSNYDAVPVTAAESNILFVGGLPKDCTRREVGHLFRPFIGYKDIKLVHKEPRRSGDKSMILCFVEFTEPKCALTAMEALQGYKFDDKKPDSSILKIQFAHFPFRPPTNDG 675
            MA+PY PY   T AP+DGA+ +R+S+AG+IPSE  SLASP+P+   S +  G G+DYL  D++L R+ PY  VDD   SRV SE N  GYS  +DP L TKRDT LGVNP V   +   +PK+N + +    A+SN+LFV  LP+DCTRREVGHLFRPFIGYKDI++VHKEPRRSGDK+M+LCFVEF + KCALTAMEALQGYKFDDKKPDS  LKIQFAHFPFRPP ++G
Sbjct:    1 MAEPYDPYAPSTAAPADGASIARSSFAGYIPSEPVSLASPYPRFSNSAELRGIGADYLQNDINLSRVGPYSSVDDAVSSRVLSEPNIKGYSPLDDPVLRTKRDTSLGVNPDVS--SERPIPKANREGL----ADSNVLFVDVLPRDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMVLCFVEFDDSKCALTAMEALQGYKFDDKKPDSRTLKIQFAHFPFRPPADNG 225
[Close]
BLAST of Ca_01645 vs. TrEMBL
Match: I1JTZ5_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 2.338e-75
Identity = 149/227 (65.64%), Postives = 175/227 (77.09%), Query Frame = 1 
Query:    1 MADPYHPYPTPAPSDGATFSRTSYAGFIPSETPSLASPHPKSTDFPGYGSDYLHKDVSLFRMEPYGVDDTRGSRVHSEHNATGYSHPEDPELSTKRDT-PLGVNPGVPDLNNES-MPKSNYDAVPVTAAESNILFVGGLPKDCTRREVGHLFRPFIGYKDIKLVHKEPRRSGDKSMILCFVEFTEPKCALTAMEALQGYKFDDKKPDSSILKIQFAHFPFRPPTNDG 675
            MADPY+ Y  P  +DGA+ +R+S+AG+IPSE PS       ST+  G GSDYL +D+ LF    Y  DDT GSRVHSE    GYS   DP LS KRDT PLG+N GVPD+++E    KS+YD +P++AA+SNILFVGGLPKDCTRREVGHLFRPFIGYKDI++VHKEPRRSGDK+M LCFVEF +  CALTA+E LQGYKFDDKKPDS  LKIQ AHFPFR P++ G
Sbjct:    1 MADPYYSYGAPVGADGASIARSSFAGYIPSE-PS------NSTELRGIGSDYLQRDIGLF----YSADDTLGSRVHSEP-VKGYSPLADPCLSKKRDTTPLGINNGVPDVSSERPASKSSYDGLPISAADSNILFVGGLPKDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMTLCFVEFVDSNCALTALETLQGYKFDDKKPDSPTLKIQPAHFPFRLPSDHG 215
[Close]
BLAST of Ca_01645 vs. TrEMBL
Match: C6TM53_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 1.515e-74
Identity = 148/227 (65.20%), Postives = 174/227 (76.65%), Query Frame = 1 
Query:    1 MADPYHPYPTPAPSDGATFSRTSYAGFIPSETPSLASPHPKSTDFPGYGSDYLHKDVSLFRMEPYGVDDTRGSRVHSEHNATGYSHPEDPELSTKRDT-PLGVNPGVPDLNNES-MPKSNYDAVPVTAAESNILFVGGLPKDCTRREVGHLFRPFIGYKDIKLVHKEPRRSGDKSMILCFVEFTEPKCALTAMEALQGYKFDDKKPDSSILKIQFAHFPFRPPTNDG 675
            MADPY+ Y  P  +DGA+ +R+S+AG+IPSE PS       ST+  G GSDYL +D+ LF    Y  D T GSRVHSE    GYS   DP LS KRDT PLG+N GVPD+++E    KS+YD +P++AA+SNILFVGGLPKDCTRREVGHLFRPFIGYKDI++VHKEPRRSGDK+M LCFVEF +  CALTA+E LQGYKFDDKKPDS  LKIQ AHFPFR P++ G
Sbjct:    1 MADPYYSYGAPVGADGASIARSSFAGYIPSE-PS------NSTELRGIGSDYLQRDIGLF----YSADGTLGSRVHSEP-VKGYSPLADPCLSKKRDTTPLGINNGVPDVSSERPASKSSYDGLPISAADSNILFVGGLPKDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMTLCFVEFVDSNCALTALETLQGYKFDDKKPDSPTLKIQPAHFPFRLPSDHG 215
[Close]
BLAST of Ca_01645 vs. TrEMBL
Match: G7J8B7_MEDTR (RNA-binding protein with multiple splicing OS=Medicago truncatula GN=MTR_3g104670 PE=4 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 2.425e-64
Identity = 123/152 (80.92%), Postives = 136/152 (89.47%), Query Frame = 1 
Query:    1 MADPYHPYPTPAPSDGATFSRTSYAGFIPSETPSLASPHPKSTDFPGYGSDYLHKDVSLFRMEPYGVDDTRGSRVHSEHNATGYSHPEDPELSTKRDTPLGVNPGVPD--LNNE-SMPKSNYDAVPVTAAESNILFVGGLPKDCTRREVGHL 447
            M DPY+PYPTPAPSDGA+F+R+SYAG+IPSE PSLASP PKSTDFPGYGSDYL+KDVSLFRMEPYGVDDTRGSRVHSEHNAT Y+  ED +LSTKRD  LGV+ GVPD   NNE S+ KSNYDA+PV+AAESNILFVGGLPKDCTRREVG +
Sbjct:    1 MTDPYYPYPTPAPSDGASFARSSYAGYIPSEAPSLASPLPKSTDFPGYGSDYLNKDVSLFRMEPYGVDDTRGSRVHSEHNATSYNPLEDVDLSTKRDALLGVSTGVPDPIANNERSISKSNYDALPVSAAESNILFVGGLPKDCTRREVGRI 152
[Close]
BLAST of Ca_01645 vs. TrEMBL
Match: D7STS7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g01390 PE=4 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 6.395e-57
Identity = 123/239 (51.46%), Postives = 159/239 (66.53%), Query Frame = 1 
Query:    1 MADPYHPYPTPAPSDGATFSRTSYAGFIPSETPSLASPHPK--STDFPGYGSDYLHKDVSLFRMEPYGVDDTRGSRVHSEH---------NATGYSHP-EDPEL-STKRDTPLGVNPGVPDLNNESMPKSNYDAVPVTAAESNILFVGGLPKDCTRREVGHLFRPFIGYKDIKLVHKEPRRSGDKSMILCFVEFTEPKCALTAMEALQGYKFDDKKPDSSILKIQFAHFPFRPPTNDGL 678
            MADPY  +   APSD  +  R+S+ G++P + PS+++ H    + D  G  SDY  KD+   R   +  DD  G RV  +          N  GY +P EDP L   +RD   G++PG+PD+   S    N +++P    ESNILFV GLPKDCTRREVGHLFRPFIG+K+I++VHKEPR SGDK+M+LCFVEF +  C+ TA+EALQGYKFDDKKPDS  L+IQFAHFPFR P++ G+
Sbjct:    1 MADPY--WRRGAPSDRGSIPRSSFPGYLPLD-PSVSAAHHLWGTNDLHGAPSDYPPKDILPVRPGAHDFDDIMGIRVPPKPVIGGFTATTNIKGYPNPVEDPNLIGQRRDVAHGISPGIPDIERPSS-FGNVESLPPPVQESNILFVDGLPKDCTRREVGHLFRPFIGFKEIRVVHKEPRHSGDKAMVLCFVEFNDASCSRTALEALQGYKFDDKKPDSPTLRIQFAHFPFRLPSDLGV 235
[Close]
BLAST of Ca_01645 vs. TrEMBL
Match: B9HDB6_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_819475 PE=4 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 5.067e-54
Identity = 125/270 (46.30%), Postives = 159/270 (58.89%), Query Frame = 1 
Query:    1 MADPYHPYPTPAPSDGATFSRTSYAGFIPSETPSLAS-PHPKSTDFPGYGSDYLHKDVSLFRMEPYGVDDTRGSRVHSE---------HNATGYSHP----------------------------------EDPELSTKR-DTPLGVNPGVPDLNNESMPKS--NYDAVPVTAAESNILFVGGLPKDCTRREVGHLFRPFIGYKDIKLVHKEPRRSGDKSMILCFVEFTEPKCALTAMEALQGYKFDDKKPDSSILKIQFAHFPFRPPTN 669
            MA+PY+ Y   A  D  + SR S+ G++ +E P LAS   P ST+FPG  SD+L +D++  ++  YG++   G     E          +  GYS P                                  EDP L ++R D  + V   +PD+ N+  P S  + D  PV   ESNILFV GLP DCTRREVGHLFRPFIGYK+I++VHKE R+SGD++ +LCFVEFT+  CA TAMEALQGYKFDDKKPDS  LKIQFA FPFRPP++
Sbjct:    1 MAEPYNMYD--ALQDRGSVSRLSFPGYVSTEAPPLASHSFPVSTEFPGASSDFLQRDINPLQLGSYGLNGYSGVGFRPEPVIGGVMPGASGKGYSSPLEDPSLLAQRGDASMHAIGGAIPGSTGKGYPSPLEDPSLLSQRGDASVRVTAAIPDMIND-RPGSLRSADGPPVPKGESNILFVDGLPTDCTRREVGHLFRPFIGYKEIRVVHKEARKSGDRATVLCFVEFTDANCAATAMEALQGYKFDDKKPDSPTLKIQFARFPFRPPSD 267
[Close]
BLAST of Ca_01645 vs. TrEMBL
Match: I1JTZ6_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 2.877e-49
Identity = 107/170 (62.94%), Postives = 128/170 (75.29%), Query Frame = 1 
Query:    1 MADPYHPYPTPAPSDGATFSRTSYAGFIPSETPSLASPHPKSTDFPGYGSDYLHKDVSLFRMEPYGVDDTRGSRVHSEHNATGYSHPEDPELSTKRDT-PLGVNPGVPDLNNES-MPKSNYDAVPVTAAESNILFVGGLPKDCTRREVGHLFRPFIGYKDIKLVHKEPRR 504
            MADPY+ Y  P  +DGA+ +R+S+AG+IPSE PS       ST+  G GSDYL +D+ LF    Y  DDT GSRVHSE    GYS   DP LS KRDT PLG+N GVPD+++E    KS+YD +P++AA+SNILFVGGLPKDCTRREVGHLFRPFIGYKDI++VHKEPRR
Sbjct:    1 MADPYYSYGAPVGADGASIARSSFAGYIPSE-PS------NSTELRGIGSDYLQRDIGLF----YSADDTLGSRVHSEP-VKGYSPLADPCLSKKRDTTPLGINNGVPDVSSERPASKSSYDGLPISAADSNILFVGGLPKDCTRREVGHLFRPFIGYKDIRVVHKEPRR 158
[Close]
BLAST of Ca_01645 vs. TrEMBL
Match: K7KT93_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 9.256e-48
Identity = 102/170 (60.00%), Postives = 124/170 (72.94%), Query Frame = 1 
Query:    1 MADPYHPYPTPAPSDGATFSRTSYAGFIPSETPSLASPHPKSTDFPGYGSDYLHKDVSLFRMEPYGVDDTRGSRVHSEHNATGYSHPEDPELSTKRDT-PLGVNPGVPDLNNES-MPKSNYDAVPVTAAESNILFVGGLPKDCTRREVGHLFRPFIGYKDIKLVHKEPRR 504
            MADPY+ Y  PA +DGA+ +R+S+AG+IPSE      P   +T+    GSDYL +D+ LF    Y  DDT GSRVHSE    GYS   DP+ S KRDT PL +  GVPD+N+E    KS+YD +P++AA+SNILFVGGLP DCTRREVGHLFRPFIGYKDI++VHKEPRR
Sbjct:    1 MADPYYSYGAPAAADGASIARSSFAGYIPSE------PSNSTTELRSIGSDYLQRDIGLF----YSADDTFGSRVHSEP-VKGYSPLADPDPSKKRDTTPLSITHGVPDVNSERPASKSSYDGLPISAADSNILFVGGLPNDCTRREVGHLFRPFIGYKDIRVVHKEPRR 159
[Close]
BLAST of Ca_01645 vs. DB:Swiss
Match: RBP2_MEDTR (RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.137e-30
Identity = 50/100 (50.00%), Postives = 71/100 (71.00%), Query Frame = 1 
Query:  358 DAVPVTAAESNILFVGGLPKDCTRREVGHLFRPFIGYKDIKLVHKEPRRSGDKSMILCFVEFTEPKCALTAMEALQGYKFDDKKPDSSILKIQFAHFPFR 657
            + +P+    S+ L+V GLP D T+REV H+FRPF+GY++++LV KE +  G   +ILCFV+F  P CA TA+ ALQGYK D+  P+SS L++QF+  P R
Sbjct:  142 ETIPLPRDASSTLYVEGLPSDSTKREVAHIFRPFVGYREVRLVAKESKHRGGDPLILCFVDFANPACAATALSALQGYKVDEINPESSYLRLQFSRSPGR 241
[Close]
BLAST of Ca_01645 vs. DB:Swiss
Match: RBP1_MEDTR (RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.519e-30
Identity = 50/89 (56.18%), Postives = 68/89 (76.40%), Query Frame = 1 
Query:  385 SNILFVGGLPKDCTRREVGHLFRPFIGYKDIKLVHKEPRRSGDKSMILCFVEFTEPKCALTAMEALQGYKFDDKKPDSSILKIQFAHFP 651
            S  L++ GLP DCTRREV H+FRPF+GY++++LV KE +  GD  +ILCFV+F  P CA TA+ ALQGYK D+  P+SS L++QF+ +P
Sbjct:  150 SPTLYIEGLPSDCTRREVAHIFRPFVGYREVRLVSKEAKHRGDP-LILCFVDFANPACAATALSALQGYKVDEINPESSHLRLQFSRYP 237
[Close]
BLAST of Ca_01645 vs. DB:Swiss
Match: NSRA_ARATH (Nuclear speckle RNA-binding protein A OS=Arabidopsis thaliana OX=3702 GN=NSRA PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.009e-29
Identity = 47/97 (48.45%), Postives = 68/97 (70.10%), Query Frame = 1 
Query:  385 SNILFVGGLPKDCTRREVGHLFRPFIGYKDIKLVHKEPRRSGDKSMILCFVEFTEPKCALTAMEALQGYKFDDKKPDSSILKIQFAHFPFRPPTNDG 675
            SN L+V GLP +C+RREV H+FRPF+GY++++LV K+ +      ++LCFV+FT P CA TA+ ALQGY+ D+ + DS  L++QF+  P   P   G
Sbjct:  135 SNTLYVEGLPSNCSRREVAHIFRPFVGYREVRLVTKDSKHRNGDPIVLCFVDFTNPACAATALSALQGYRMDENESDSKFLRLQFSRKPGSRPGQRG 231
[Close]
BLAST of Ca_01645 vs. DB:Swiss
Match: NSRB_ARATH (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.641e-25
Identity = 47/90 (52.22%), Postives = 68/90 (75.56%), Query Frame = 1 
Query:  385 SNILFVGGLPKDCTRREVGHLFRPFIGYKDIKLVHKEPR-RSGDKSMILCFVEFTEPKCALTAMEALQGYKFDDKKPDSSILKIQFAHFP 651
            SN L+V GLP +C+RREV H+FRPF+GY++++LV ++ + RSGD + +LCFV+F    CA TA+ ALQ Y+ D+ +PDS IL++QF   P
Sbjct:  322 SNTLYVEGLPSNCSRREVSHIFRPFVGYREVRLVTQDSKHRSGDPT-VLCFVDFENSACAATALSALQDYRMDEDEPDSKILRLQFFRNP 410
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BLAST of Ca_01645 vs. DB:Swiss
Match: MEG5_MAIZE (Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX=4577 GN=MEG5 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.251e-21
Identity = 42/97 (43.30%), Postives = 62/97 (63.92%), Query Frame = 1 
Query:  313 GVPDLNNESMPKSNYDAVPVTAAESNILFVGGLPKDCTRREVGHLFRPFIGYKDIKLVHKEPRRSGDKSMILCFVEFTEPKCALTAMEALQGYKFDD 603
            GV  +++  M        P+    S+ L++ GLP +CTRREV H+FRPF+G+++++LV+KE R  G    +LCFV+F  P  A  A+EALQG+  DD
Sbjct:   13 GVVGMDSRGMGYGGRPEPPLPPDASSTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDNPAQATIALEALQGHVTDD 109
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BLAST of Ca_01645 vs. DB:Swiss
Match: RBPS2_CHICK (RNA-binding protein with multiple splicing 2 OS=Gallus gallus OX=9031 GN=RBPMS2 PE=1 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 6.451e-8
Identity = 36/89 (40.45%), Postives = 46/89 (51.69%), Query Frame = 1 
Query:  382 ESNILFVGGLPKDCTRREVGHLFRPFIGYKD--IKLVHKEPRRSGDKSMILCFVEFTEPKCALTAMEALQGYKFDDKKPDSSILKIQFA 642
            E   LFV GLP D   RE+  LFRPF GY+   IKL  K+P         + FV F     A  A  AL G +FD + P +  L+++FA
Sbjct:   20 EVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQP---------VGFVTFDSRAGAEAAKNALNGIRFDPENPQT--LRLEFA 97
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BLAST of Ca_01645 vs. DB:Swiss
Match: RBPMS_HUMAN (RNA-binding protein with multiple splicing OS=Homo sapiens OX=9606 GN=RBPMS PE=1 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 1.108e-7
Identity = 36/90 (40.00%), Postives = 46/90 (51.11%), Query Frame = 1 
Query:  382 ESNILFVGGLPKDCTRREVGHLFRPFIGYKD--IKLVHKEPRRSGDKSMILCFVEFTEPKCALTAMEALQGYKFDDKKPDSSILKIQFAH 645
            E   LFV GLP D   RE+  LFRPF GY+   IKL  K+P         + FV F     A  A  AL G +FD + P +  L+++FA 
Sbjct:   22 EVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQP---------VGFVSFDSRSEAEAAKNALNGIRFDPEIPQT--LRLEFAK 100
[Close]
BLAST of Ca_01645 vs. DB:Swiss
Match: RBPMS_MOUSE (RNA-binding protein with multiple splicing OS=Mus musculus OX=10090 GN=Rbpms PE=1 SV=2)

HSP 1 Score: 53.5286 bits (127), Expect = 1.580e-7
Identity = 36/90 (40.00%), Postives = 46/90 (51.11%), Query Frame = 1 
Query:  382 ESNILFVGGLPKDCTRREVGHLFRPFIGYKD--IKLVHKEPRRSGDKSMILCFVEFTEPKCALTAMEALQGYKFDDKKPDSSILKIQFAH 645
            E   LFV GLP D   RE+  LFRPF GY+   IKL  K+P         + FV F     A  A  AL G +FD + P +  L+++FA 
Sbjct:   22 EVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQP---------VGFVSFDSRSEAEAAKNALNGIRFDPEIPQT--LRLEFAK 100
[Close]
BLAST of Ca_01645 vs. DB:Swiss
Match: RBPS2_XENLA (RNA-binding protein with multiple splicing 2 OS=Xenopus laevis OX=8355 GN=rbpms2 PE=2 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 2.199e-7
Identity = 35/85 (41.18%), Postives = 45/85 (52.94%), Query Frame = 1 
Query:  394 LFVGGLPKDCTRREVGHLFRPFIGYKD--IKLVHKEPRRSGDKSMILCFVEFTEPKCALTAMEALQGYKFDDKKPDSSILKIQFA 642
            LFV GLP D   RE+  LFRPF GY+   IKL  K+P         + FV F     A  A  AL G +FD + P +  L+++FA
Sbjct:   22 LFVSGLPIDIKPRELYLLFRPFKGYEGSLIKLTSKQP---------VGFVTFDNRAGAEAAKNALNGIRFDPENPQT--LRLEFA 95
[Close]
BLAST of Ca_01645 vs. DB:Swiss
Match: RBPS2_MOUSE (RNA-binding protein with multiple splicing 2 OS=Mus musculus OX=10090 GN=Rbpms2 PE=1 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 3.358e-7
Identity = 35/89 (39.33%), Postives = 46/89 (51.69%), Query Frame = 1 
Query:  382 ESNILFVGGLPKDCTRREVGHLFRPFIGYKD--IKLVHKEPRRSGDKSMILCFVEFTEPKCALTAMEALQGYKFDDKKPDSSILKIQFA 642
            E   LFV GLP D   RE+  LFRPF GY+   IKL  ++P         + FV F     A  A  AL G +FD + P +  L+++FA
Sbjct:   23 EVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSRQP---------VGFVIFDSRAGAEAAKNALNGIRFDPENPQT--LRLEFA 100
The following BLAST results are available for this feature:
BLAST of Ca_01645 vs. SwissProt
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
RU1A_ARATH5.736e-725.89U1 small nuclear ribonucleoprotein A OS=Arabidopsi... [more]
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BLAST of Ca_01645 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
G7J8B6_MEDTR8.504e-11085.09RNA-binding protein with multiple splicing OS=Medi... [more]
I1K8E6_SOYBN4.710e-7664.76Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
I3T8X8_LOTJA6.151e-7664.07Uncharacterized protein OS=Lotus japonicus PE=2 SV... [more]
I1JTZ5_SOYBN2.338e-7565.64Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
C6TM53_SOYBN1.515e-7465.20Putative uncharacterized protein OS=Glycine max PE... [more]
G7J8B7_MEDTR2.425e-6480.92RNA-binding protein with multiple splicing OS=Medi... [more]
D7STS7_VITVI6.395e-5751.46Putative uncharacterized protein OS=Vitis vinifera... [more]
B9HDB6_POPTR5.067e-5446.30Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
I1JTZ6_SOYBN2.877e-4962.94Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
K7KT93_SOYBN9.256e-4860.00Uncharacterized protein OS=Glycine max PE=4 SV=1[more]

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BLAST of Ca_01645 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
RBP2_MEDTR1.137e-3050.00RNA-binding protein 2 OS=Medicago truncatula OX=38... [more]
RBP1_MEDTR1.519e-3056.18RNA-binding protein 1 OS=Medicago truncatula OX=38... [more]
NSRA_ARATH2.009e-2948.45Nuclear speckle RNA-binding protein A OS=Arabidops... [more]
NSRB_ARATH1.641e-2552.22Nuclear speckle RNA-binding protein B OS=Arabidops... [more]
MEG5_MAIZE6.251e-2143.30Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX... [more]
RBPS2_CHICK6.451e-840.45RNA-binding protein with multiple splicing 2 OS=Ga... [more]
RBPMS_HUMAN1.108e-740.00RNA-binding protein with multiple splicing OS=Homo... [more]
RBPMS_MOUSE1.580e-740.00RNA-binding protein with multiple splicing OS=Mus ... [more]
RBPS2_XENLA2.199e-741.18RNA-binding protein with multiple splicing 2 OS=Xe... [more]
RBPS2_MOUSE3.358e-739.33RNA-binding protein with multiple splicing 2 OS=Mu... [more]
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InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 132..203
score: 6.9
IPR000504RNA recognition motif domainSMARTSM00360RNA recognition motifcoord: 131..207
score: 1.7
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 130..216
score: 12
IPR012677Nucleotide-binding, alpha-beta plaitGENE3D3.30.70.330no descriptioncoord: 127..214
score: 8.7
IPR024888U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B''PANTHERPTHR10501U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN Bcoord: 108..219
score: 2.9
NoneNo IPR availablePANTHERPTHR10501:SF0SMALL NUCLEAR RIBONUCLEOPROTEINcoord: 108..219
score: 2.9
NoneNo IPR availableSUPERFAMILY54928RNA-binding domain, RBDcoord: 62..219
score: 3.3
NoneNo IPR availableSEGsegsegcoord: 5..15
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_01645_v1.0_kabuli ID=Ca_01645_v1.0_kabuli; Name=Ca_01645; organism=Cicer arietinum; type=mRNA; length=681bp
ATGGCGGATCCCTACCACCCATACCCAACTCCTGCACCTTCTGACGGAGC
AACCTTTTCCAGAACTAGCTATGCTGGTTTCATTCCATCAGAGACACCAT
CACTGGCTTCTCCTCATCCTAAATCAACTGATTTTCCGGGCTATGGATCA
GATTACCTCCATAAAGATGTAAGCTTGTTCAGGATGGAGCCATATGGTGT
TGATGATACTAGGGGCTCTAGAGTTCATTCTGAACATAATGCTACGGGTT
ATTCTCATCCTGAAGATCCCGAATTAAGTACGAAAAGAGATACTCCATTG
GGCGTTAATCCAGGTGTTCCTGATTTGAACAATGAATCGATGCCTAAAAG
CAATTATGACGCCGTCCCAGTTACGGCTGCAGAATCAAACATTCTGTTTG
TGGGTGGGCTTCCGAAAGATTGCACAAGAAGAGAAGTAGGCCATCTTTTC
CGTCCCTTTATCGGCTATAAGGATATCAAACTTGTTCACAAGGAGCCAAG
ACGTAGTGGGGACAAGTCTATGATTTTGTGTTTTGTGGAGTTTACTGAAC
CCAAATGTGCTCTCACCGCCATGGAAGCTCTGCAAGGCTACAAGTTTGAT
GATAAAAAACCTGATTCGTCAATCTTGAAAATCCAGTTTGCACACTTTCC
TTTCCGCCCGCCAACTAATGATGGACTATAA
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protein sequence of Ca_01645_v1.0_kabuli

>Ca_01645_v1.0_kabuli ID=Ca_01645_v1.0_kabuli; Name=Ca_01645_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=226bp
MADPYHPYPTPAPSDGATFSRTSYAGFIPSETPSLASPHPKSTDFPGYGS
DYLHKDVSLFRMEPYGVDDTRGSRVHSEHNATGYSHPEDPELSTKRDTPL
GVNPGVPDLNNESMPKSNYDAVPVTAAESNILFVGGLPKDCTRREVGHLF
RPFIGYKDIKLVHKEPRRSGDKSMILCFVEFTEPKCALTAMEALQGYKFD
DKKPDSSILKIQFAHFPFRPPTNDGL
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mRNA from alignment at Ca5:35800570..35802677+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_01645_v1.0_kabuli ID=Ca_01645_v1.0_kabuli; Name=Ca_01645; organism=Cicer arietinum; type=mRNA; length=2108bp; location=Sequence derived from: Ca5:35800570..35802677+ (Cicer arietinum
ATGGCGGATCCCTACCACCCATACCCAACTCCTGCACCTTCTGACGGAGG
TACTCCCTCTTCTTATCATTTCCTTAACATTATCCCCATTTTTCTCCATC
ATAATTATGCCTTTGTGATTCTCATTCCCCTAAAACTCCTTACTTTCTTG
ATCACTCTCAAAATTAAAATGTTCAGTTAATACTTAGGGTAAATTTCAAG
ATTCAACTTTTAAATAGCTGAAACGAGTTACATAGATGTTTTAAACCTAA
AGAATAAGAATAGTGTAGTTCTATTCTATTACTAGTAGTACTAAACTTTA
TTATTCCCTTTCAAATAATCACAACAACACTCATTTTTGTGTGTTTCTTT
CTCTGTTATGTCAGCAACCTTTTCCAGAACTAGCTATGCTGGTTTCATTC
CATCAGAGACACCATCACTGGCTTCTCCTCATCCTAAATCAACTGATTTT
CCGGGCTATGGATCAGATTACCTCCATAAAGATGTAAAACTTTAATAACT
TCCGATTAATTTTTAATGCACGTGGTAGAGATTTGTGTTTTTTCACTTTT
CGTGTGGACTATTTTCAGGTAAGCTTGTTCAGGATGGAGCCATATGGTGT
TGATGATACTAGGGGCTCTAGAGTTCATTCTGAACATAATGCTACGGGTT
ATTCTCATCCTGAAGATCCCGAATTAAGTACGAAAAGAGATACTCCATTG
GGCGTTAATCCAGGTGTTCCTGATTTGAACAATGAATCGATGCCTAAAAG
CAATTATGACGCCGTCCCAGTTACGGCTGCAGAATCAAACATTCTGTTTG
TGGGTGGGCTTCCGAAAGATTGCACAAGAAGAGAAGTAGGCCGTATCCTT
TGCCACTTGTATGTCTGATTGTATGCATTGGCATAAATGTTTTTGATCCT
TATGTGTGGATAGTGATGGATAGGATGAACCTGTTTTCAAATTTTTAACT
TTGTTGGATTTTTACTACATGAGAATATGAGATTACGTTAGGTGTTATTT
ATTTCAAAGTTGAGCAAAAACTTTGTATGGACAATAATTTGCCTTCTAAC
AATTTATGGAAATGAAACTACTTGATGTCTGATATAACATTAATTGTATT
TCAGTGTTCTGTTGTTACGAATCCTTGACCTATCCATTTAGATCTTTTCC
GTCCCTTTATCGGCTATAAGGATATCAAACTTGTTCACAAGGAGCCAAGA
CGTGTAAGTGTGTTAATTAGGAATTTCATGCTGATTATTTTAGAAAATTC
CATCATTGTACAATCCATCTAACACTATTATAATTTTGGTTGGGAAAGAA
AAGAAAGAATATATACGAGATTGTGATTATTGTGTATATTTCAGCAATAT
AATATTTGTTTCTACACCTGTTATGATATTCCTCTTAATTGCTATTATTA
GTAAAAAGATGTTTAGCTTAGAGTCTTAAATGCACCATTTCTTTTTGCTT
GATGTATTATGGATATTTAATTGTTTTTAAATGACCAAGCATACTGCAGA
GTGGGGACAAGTCTATGATTTTGTGTTTTGTGGAGTTTACTGAACCCAAA
TGTGCTCTCACCGCCATGGAAGCTCTGCAAGGTAAATGCTTTTTTTCTTG
GTGTCAATATAACTGAGTTTCATGGTGAGGATAGGAGACCTGTAGATTAC
ATAGTGAGGAGAATATATCATATGGAGGATAGTCAAATCATTAGAGGAGG
AAAAGACCGAAGAAAATTATAAGGAAAACTATTAGGAAAAACCTTGAGGT
TAATGAGCTAGAACGAGATATAGAACGAGATATGTTATATGATAGAACAC
TATGACATCGTTTGATCCATTTAGTCGACCCTACTTAGTAGAAAAAGGCT
TGGTTGTTGTCGTCAATATAATTGAGTTTGATATATTGGGTTGCTTGTCA
CTGCTTAACAGAGAATTAAAAATGTTATTTAAGCCAAACTTAAATTAATT
GATGCGTTGTCATTTAATGAACGTGTGGAAAATACATATTCTCAAGCGTA
TAATTTTATGCAGGCTACAAGTTTGATGATAAAAAACCTGATTCGTCAAT
CTTGAAAATCCAGTTTGCACACTTTCCTTTCCGCCCGCCAACTAATGATG
GACTATAA
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Coding sequence (CDS) from alignment at Ca5:35800570..35802677+

>Ca_01645_v1.0_kabuli ID=Ca_01645_v1.0_kabuli; Name=Ca_01645; organism=Cicer arietinum; type=CDS; length=681bp; location=Sequence derived from: Ca5:35800570..35802677+ (Cicer arietinum
ATGGCGGATCCCTACCACCCATACCCAACTCCTGCACCTTCTGACGGAGC
AACCTTTTCCAGAACTAGCTATGCTGGTTTCATTCCATCAGAGACACCAT
CACTGGCTTCTCCTCATCCTAAATCAACTGATTTTCCGGGCTATGGATCA
GATTACCTCCATAAAGATGTAAGCTTGTTCAGGATGGAGCCATATGGTGT
TGATGATACTAGGGGCTCTAGAGTTCATTCTGAACATAATGCTACGGGTT
ATTCTCATCCTGAAGATCCCGAATTAAGTACGAAAAGAGATACTCCATTG
GGCGTTAATCCAGGTGTTCCTGATTTGAACAATGAATCGATGCCTAAAAG
CAATTATGACGCCGTCCCAGTTACGGCTGCAGAATCAAACATTCTGTTTG
TGGGTGGGCTTCCGAAAGATTGCACAAGAAGAGAAGTAGGCCATCTTTTC
CGTCCCTTTATCGGCTATAAGGATATCAAACTTGTTCACAAGGAGCCAAG
ACGTAGTGGGGACAAGTCTATGATTTTGTGTTTTGTGGAGTTTACTGAAC
CCAAATGTGCTCTCACCGCCATGGAAGCTCTGCAAGGCTACAAGTTTGAT
GATAAAAAACCTGATTCGTCAATCTTGAAAATCCAGTTTGCACACTTTCC
TTTCCGCCCGCCAACTAATGATGGACTATAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR024888RRM_U1_A/B''
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO:0017069snRNA binding