Ca_01730, Ca_01730_v1.0_kabuli (mRNA) Cicer arietinum

Transcript Overview
NameCa_01730
Unique NameCa_01730_v1.0_kabuli
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length156
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca5chromosomeCa5:35057551..35057888 -Cicer arietinum CDC Frontier genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
capsR381Pisum sativum Cameor genome v1aPisum sativum
capsR429Pisum sativum Cameor genome v1aPisum sativum
cavuR422Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
cavuR434Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
capvR428Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
capvR512Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ancaL0032Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0104Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0106Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0331Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0383Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0754Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0761Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0954Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaL053Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaL553Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaL644Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaL755Vigna angularis Jingnong 6 genome v1.1Vigna angularis
catifR400Vicia faba cv. Tiffany genome v1.0Vicia faba
catifR418Vicia faba cv. Tiffany genome v1.0Vicia faba
cavfhR402Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavfhR420Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavrvR409Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavrvR440Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavrvR455Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavrvR463Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cacanR165Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cacanR181Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cacanR189Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
rna-TanjilR_07859Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigun09g213500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
LR48_mrnaVigan01g247400Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-TanjilR_30704Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Phvul.009G089400.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-TanjilR_12481Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-XM_014652515.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-XM_014645009.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Psat6g028720.1Pisum sativum Cameor genome v1aPisum sativum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-XM_004501309.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
rna-XM_004498720.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_01730-CDS1Ca_01730-CDS1Cicer arietinumCDS
Ca_01730-CDS2Ca_01730-CDS2Cicer arietinumCDS
Ca_01730-CDS3Ca_01730-CDS3Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_01730_v1.0_kabuliCa_01730_v1.0_kabuliCicer arietinumpolypeptide


Homology
[Close]
BLAST of Ca_01730 vs. SwissProt
Match: RL39_MAIZE (60S ribosomal protein L39 OS=Zea mays GN=RPL39 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.730e-25
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 153
            MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51
[Close]
BLAST of Ca_01730 vs. SwissProt
Match: RL392_ORYSJ (60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica GN=RPL39B PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 5.730e-25
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 153
            MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51
[Close]
BLAST of Ca_01730 vs. SwissProt
Match: RL391_ORYSJ (60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica GN=RPL39A PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 5.730e-25
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 153
            MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51
[Close]
BLAST of Ca_01730 vs. SwissProt
Match: RL393_ORYSJ (60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica GN=RPL39C PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.667e-24
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 153
            MPSHKTF+IKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51
[Close]
BLAST of Ca_01730 vs. SwissProt
Match: RL391_ARATH (60S ribosomal protein L39-1 OS=Arabidopsis thaliana GN=RPL39A PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 2.038e-22
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 153
            MPSHK+F IKKKL KKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51
[Close]
BLAST of Ca_01730 vs. SwissProt
Match: RL392_ARATH (60S ribosomal protein L39-2 OS=Arabidopsis thaliana GN=RPL39B PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.943e-21
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 153
            MPSHK+F IKKKL KKMRQNRPIP WIR+RTDN IRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKLGF 51
[Close]
BLAST of Ca_01730 vs. SwissProt
Match: RL39_SPOFR (60S ribosomal protein L39 OS=Spodoptera frugiperda GN=RpL39 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.785e-18
Identity = 40/49 (81.63%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 147
            M +HKTF IK+KLAKK++QNRPIP W+RMRT NTIRYNAKRRHWRRTKL
Sbjct:    1 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 49
[Close]
BLAST of Ca_01730 vs. SwissProt
Match: RL39_PLUXY (60S ribosomal protein L39 OS=Plutella xylostella GN=RpL39 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.785e-18
Identity = 40/49 (81.63%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 147
            M +HKTF IK+KLAKK++QNRPIP W+RMRT NTIRYNAKRRHWRRTKL
Sbjct:    1 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 49
[Close]
BLAST of Ca_01730 vs. SwissProt
Match: RL39_RAT (60S ribosomal protein L39 OS=Rattus norvegicus GN=Rpl39 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 5.195e-18
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 150
            M SHKTFRIK+ LAKK +QNRPIP WIRM+T N IRYN+KRRHWRRTKLG
Sbjct:    1 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLG 50
[Close]
BLAST of Ca_01730 vs. SwissProt
Match: RL39_MOUSE (60S ribosomal protein L39 OS=Mus musculus GN=Rpl39 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 5.195e-18
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 150
            M SHKTFRIK+ LAKK +QNRPIP WIRM+T N IRYN+KRRHWRRTKLG
Sbjct:    1 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLG 50
[Close]
BLAST of Ca_01730 vs. TrEMBL
Match: K7W5V0_MAIZE (60S ribosomal protein L39 (Fragment) OS=Zea mays GN=ZEAMMB73_425434 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 4.028e-23
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 153
            MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct:   49 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 99
[Close]
BLAST of Ca_01730 vs. TrEMBL
Match: K7U982_MAIZE (60S ribosomal protein L39 (Fragment) OS=Zea mays GN=ZEAMMB73_641615 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 4.028e-23
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 153
            MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct:   27 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 77
[Close]
BLAST of Ca_01730 vs. TrEMBL
Match: K3YWL0_SETIT (Uncharacterized protein OS=Setaria italica GN=Si018656m.g PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 4.028e-23
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 153
            MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct:   87 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 137
[Close]
BLAST of Ca_01730 vs. TrEMBL
Match: J3LI08_ORYBR (Uncharacterized protein OS=Oryza brachyantha GN=OB02G42750 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 4.028e-23
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 153
            MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51
[Close]
BLAST of Ca_01730 vs. TrEMBL
Match: I1P567_ORYGL (Uncharacterized protein OS=Oryza glaberrima PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 4.028e-23
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 153
            MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51
[Close]
BLAST of Ca_01730 vs. TrEMBL
Match: I1JU90_SOYBN (Uncharacterized protein OS=Glycine max PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 4.028e-23
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 153
            MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51
[Close]
BLAST of Ca_01730 vs. TrEMBL
Match: C5XUH6_SORBI (Putative uncharacterized protein Sb04g036030 OS=Sorghum bicolor GN=Sb04g036030 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 4.028e-23
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 153
            MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51
[Close]
BLAST of Ca_01730 vs. TrEMBL
Match: B6SP00_MAIZE (60S ribosomal protein L39 OS=Zea mays PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 4.028e-23
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 153
            MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51
[Close]
BLAST of Ca_01730 vs. TrEMBL
Match: A2XAK5_ORYSI (60S ribosomal protein l39 OS=Oryza sativa subsp. indica GN=OsI_09286 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 4.028e-23
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 153
            MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51
[Close]
BLAST of Ca_01730 vs. TrEMBL
Match: J3MRS3_ORYBR (Uncharacterized protein OS=Oryza brachyantha GN=OB08G18020 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 5.261e-23
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 153
            MPSHKTFR+KKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKTFRVKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51
[Close]
BLAST of Ca_01730 vs. DB:Swiss
Match: RL39_MAIZE (60S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.349e-31
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 153
            MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51
[Close]
BLAST of Ca_01730 vs. DB:Swiss
Match: RL392_ORYSJ (60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 7.349e-31
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 153
            MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51
[Close]
BLAST of Ca_01730 vs. DB:Swiss
Match: RL391_ORYSJ (60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 7.349e-31
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 153
            MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51
[Close]
BLAST of Ca_01730 vs. DB:Swiss
Match: RL393_ORYSJ (60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.229e-30
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 153
            MPSHKTF+IKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51
[Close]
BLAST of Ca_01730 vs. DB:Swiss
Match: RL391_ARATH (60S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 8.604e-28
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 153
            MPSHK+F IKKKL KKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51
[Close]
BLAST of Ca_01730 vs. DB:Swiss
Match: RL392_ARATH (60S ribosomal protein L39-2 OS=Arabidopsis thaliana OX=3702 GN=RPL39B PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.129e-26
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 153
            MPSHK+F IKKKL KKMRQNRPIP WIR+RTDN IRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKLGF 51
[Close]
BLAST of Ca_01730 vs. DB:Swiss
Match: RL39_CANAX (60S ribosomal protein L39 OS=Candida albicans OX=5476 GN=RPL39 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.815e-23
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 153
            MPS K+FR K+KLAK  +QNRP+P WIR+RTDN IRYNAKRRHWRRTKLG 
Sbjct:    1 MPSQKSFRTKQKLAKAQKQNRPLPQWIRLRTDNKIRYNAKRRHWRRTKLGI 51
[Close]
BLAST of Ca_01730 vs. DB:Swiss
Match: RL39_SPOFR (60S ribosomal protein L39 OS=Spodoptera frugiperda OX=7108 GN=RpL39 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.525e-23
Identity = 40/49 (81.63%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 147
            M +HKTF IK+KLAKK++QNRPIP W+RMRT NTIRYNAKRRHWRRTKL
Sbjct:    1 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 49
[Close]
BLAST of Ca_01730 vs. DB:Swiss
Match: RL39_PLUXY (60S ribosomal protein L39 OS=Plutella xylostella OX=51655 GN=RpL39 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.525e-23
Identity = 40/49 (81.63%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 147
            M +HKTF IK+KLAKK++QNRPIP W+RMRT NTIRYNAKRRHWRRTKL
Sbjct:    1 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 49
[Close]
BLAST of Ca_01730 vs. DB:Swiss
Match: RL39_ICTPU (60S ribosomal protein L39 OS=Ictalurus punctatus OX=7998 GN=rpl39 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.076e-22
Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 153
            M SHKTFRIK+ LAKK +QNRPIP WIRM+T N IRYN+KRRHWRRTKLG 
Sbjct:    1 MASHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51
The following BLAST results are available for this feature:
BLAST of Ca_01730 vs. SwissProt
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs Swissprot)
Total hits: 25
Match NameE-valueIdentityDescription
RL39_MAIZE5.730e-25100.0060S ribosomal protein L39 OS=Zea mays GN=RPL39 PE=... [more]
RL392_ORYSJ5.730e-25100.0060S ribosomal protein L39-2 OS=Oryza sativa subsp.... [more]
RL391_ORYSJ5.730e-25100.0060S ribosomal protein L39-1 OS=Oryza sativa subsp.... [more]
RL393_ORYSJ1.667e-2498.0460S ribosomal protein L39-3 OS=Oryza sativa subsp.... [more]
RL391_ARATH2.038e-2290.2060S ribosomal protein L39-1 OS=Arabidopsis thalian... [more]
RL392_ARATH2.943e-2188.2460S ribosomal protein L39-2 OS=Arabidopsis thalian... [more]
RL39_SPOFR1.785e-1881.6360S ribosomal protein L39 OS=Spodoptera frugiperda... [more]
RL39_PLUXY1.785e-1881.6360S ribosomal protein L39 OS=Plutella xylostella G... [more]
RL39_RAT5.195e-1880.0060S ribosomal protein L39 OS=Rattus norvegicus GN=... [more]
RL39_MOUSE5.195e-1880.0060S ribosomal protein L39 OS=Mus musculus GN=Rpl39... [more]

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BLAST of Ca_01730 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
K7W5V0_MAIZE4.028e-23100.0060S ribosomal protein L39 (Fragment) OS=Zea mays G... [more]
K7U982_MAIZE4.028e-23100.0060S ribosomal protein L39 (Fragment) OS=Zea mays G... [more]
K3YWL0_SETIT4.028e-23100.00Uncharacterized protein OS=Setaria italica GN=Si01... [more]
J3LI08_ORYBR4.028e-23100.00Uncharacterized protein OS=Oryza brachyantha GN=OB... [more]
I1P567_ORYGL4.028e-23100.00Uncharacterized protein OS=Oryza glaberrima PE=3 S... [more]
I1JU90_SOYBN4.028e-23100.00Uncharacterized protein OS=Glycine max PE=3 SV=1[more]
C5XUH6_SORBI4.028e-23100.00Putative uncharacterized protein Sb04g036030 OS=So... [more]
B6SP00_MAIZE4.028e-23100.0060S ribosomal protein L39 OS=Zea mays PE=3 SV=1[more]
A2XAK5_ORYSI4.028e-23100.0060S ribosomal protein l39 OS=Oryza sativa subsp. i... [more]
J3MRS3_ORYBR5.261e-2398.04Uncharacterized protein OS=Oryza brachyantha GN=OB... [more]

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BLAST of Ca_01730 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
RL39_MAIZE7.349e-31100.0060S ribosomal protein L39 OS=Zea mays OX=4577 GN=R... [more]
RL392_ORYSJ7.349e-31100.0060S ribosomal protein L39-2 OS=Oryza sativa subsp.... [more]
RL391_ORYSJ7.349e-31100.0060S ribosomal protein L39-1 OS=Oryza sativa subsp.... [more]
RL393_ORYSJ2.229e-3098.0460S ribosomal protein L39-3 OS=Oryza sativa subsp.... [more]
RL391_ARATH8.604e-2890.2060S ribosomal protein L39-1 OS=Arabidopsis thalian... [more]
RL392_ARATH2.129e-2688.2460S ribosomal protein L39-2 OS=Arabidopsis thalian... [more]
RL39_CANAX4.815e-2376.4760S ribosomal protein L39 OS=Candida albicans OX=5... [more]
RL39_SPOFR8.525e-2381.6360S ribosomal protein L39 OS=Spodoptera frugiperda... [more]
RL39_PLUXY8.525e-2381.6360S ribosomal protein L39 OS=Plutella xylostella O... [more]
RL39_ICTPU2.076e-2278.4360S ribosomal protein L39 OS=Ictalurus punctatus O... [more]
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InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000077Ribosomal protein L39ePANTHERPTHR19970FAMILY NOT NAMEDcoord: 1..51
score: 7.8
IPR000077Ribosomal protein L39ePFAMPF00832Ribosomal_L39coord: 9..50
score: 2.6
IPR020083Ribosomal protein L39e, conserved sitePROSITEPS00051RIBOSOMAL_L39Ecoord: 30..46
score
IPR023626Ribosomal protein L39e domainGENE3D1.10.1620.10no descriptioncoord: 3..50
score: 3.2
IPR023626Ribosomal protein L39e domainSUPERFAMILY48662Ribosomal protein L39ecoord: 3..51
score: 2.2
NoneNo IPR availablePRODOMPD007914RL39_MAIZE_P51425;coord: 1..37
score: 1
NoneNo IPR availableSEGsegsegcoord: 16..33
score: NAcoord: 34..43
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_01730_v1.0_kabuli ID=Ca_01730_v1.0_kabuli; Name=Ca_01730; organism=Cicer arietinum; type=mRNA; length=156bp
ATGCCGTCACACAAGACCTTCAGAATCAAGAAGAAGTTGGCGAAGAAGAT
GAGGCAGAACAGGCCCATCCCCTACTGGATCCGGATGAGGACCGACAACA
CCATCAGGTACAATGCTAAGCGCCGTCACTGGCGTCGCACCAAGCTTGGA
TTCTGA
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protein sequence of Ca_01730_v1.0_kabuli

>Ca_01730_v1.0_kabuli ID=Ca_01730_v1.0_kabuli; Name=Ca_01730_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=51bp
MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG
F
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mRNA from alignment at Ca5:35057551..35057888-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_01730_v1.0_kabuli ID=Ca_01730_v1.0_kabuli; Name=Ca_01730; organism=Cicer arietinum; type=mRNA; length=338bp; location=Sequence derived from: Ca5:35057551..35057888- (Cicer arietinum
ATGGTACCTACCAATCTTCTATTATTCGTCATGTTGATTTCAATTCCGAT
TTGATTTCTGATTCGTAGATTTGGGTTTTTGTTTTTGTTTGTAGCCGTCA
CACAAGACCTTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGGCAGAA
CAGGCCCATCCCCTACTGGATCCGGATGAGGACCGACAACACCATCAGGT
ATATCGCTTTTTCAAACGCCGTTTTATTGATTCGTTATCATTTCTATGTT
CCCTTTCGCTGAATTTGTTTTTCTGTGTTTCTCTTTTAGGTACAATGCTA
AGCGCCGTCACTGGCGTCGCACCAAGCTTGGATTCTGA
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Coding sequence (CDS) from alignment at Ca5:35057551..35057888-

>Ca_01730_v1.0_kabuli ID=Ca_01730_v1.0_kabuli; Name=Ca_01730; organism=Cicer arietinum; type=CDS; length=156bp; location=Sequence derived from: Ca5:35057551..35057888- (Cicer arietinum
ATGCCGTCACACAAGACCTTCAGAATCAAGAAGAAGTTGGCGAAGAAGAT
GAGGCAGAACAGGCCCATCCCCTACTGGATCCGGATGAGGACCGACAACA
CCATCAGGTACAATGCTAAGCGCCGTCACTGGCGTCGCACCAAGCTTGGA
TTCTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: KEGG ORTHOLOGY
TermDefinition
K02924RP-L39e, RPL39; large subunit ribosomal protein L39e
Vocabulary: KEGG PATHWAY
TermDefinition
ko03010Ribosome
Vocabulary: INTERPRO
TermDefinition
IPR000077Ribosomal_eL39
IPR020083Ribosomal_L39_CS
IPR023626Ribosomal_eL39_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular anatomical structure
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation