Ca_04698, Ca_04698_v1.0_kabuli (mRNA) Cicer arietinum
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Ca_04698 vs. SwissProt
Match: RFC3_ARATH (Replication factor C subunit 3 OS=Arabidopsis thaliana GN=RFC3 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 3.245e-12 Identity = 41/116 (35.34%), Postives = 69/116 (59.48%), Query Frame = 1 Query: 988 LWATKHQPKFLADFICNRDKALQLKALVKEGCGCNHFIFEGPSNVGKRSMIRAMLREVFGADKVQVTEEYKHIKL-KGEMVENLQLRLQKSLHHVEVNLSEAKGYEKHVIVDLFKE 1332 LW K++PK L I + D A +LK LV E C H +F GPS GK+++I A+L++++GA +V E + K+ G +L+L S +HVE+ S+A +++++ ++ KE Sbjct: 2 LWVDKYRPKSLDKVIVHEDIAQKLKKLVSEQ-DCPHLLFYGPSGSGKKTLIMALLKQIYGASAEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKE 116
BLAST of Ca_04698 vs. SwissProt
Match: RFC5_ORYSJ (Replication factor C subunit 5 OS=Oryza sativa subsp. japonica GN=RFC5 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 9.442e-12 Identity = 41/116 (35.34%), Postives = 67/116 (57.76%), Query Frame = 1 Query: 988 LWATKHQPKFLADFICNRDKALQLKALVKEGCGCNHFIFEGPSNVGKRSMIRAMLREVFGADKVQVTEEYKHIKL-KGEMVENLQLRLQKSLHHVEVNLSEAKGYEKHVIVDLFKE 1332 LW K++PK L + A LK LV E C H +F GPS GK++++ A+++++FGA +V E K K+ G ++L + S HHVE+N S+A +++V+ ++ KE Sbjct: 2 LWVDKYRPKTLDKVTVHDQVAQNLKKLVAEQ-DCPHLLFYGPSGSGKKTLVMALIKQMFGAGADKVKMENKTWKIDTGSRNIEIELAMLSSAHHVEMNPSDAGFQDRYVVQEVIKE 116 HSP 2 Score: 56.225 bits (134), Expect = 9.146e-7 Identity = 25/71 (35.21%), Postives = 44/71 (61.97%), Query Frame = 1 Query: 1486 WEEDILNIAKNIIREQSPRQLYVIRRKLQSLMIHDVPPDFIYKTLVAELTSLVDDSLCSGVAKLDSEYNVK 1698 WE+ + IA +I++EQSP++L+ +R+K L+++ +PP+ I K L+AEL +D L + + Y K Sbjct: 253 WEQYVSEIAADIMKEQSPKRLFAVRQKFYELLVNCIPPESILKKLLAELLKKLDSDLKHEICHWAAHYEHK 323
BLAST of Ca_04698 vs. SwissProt
Match: RFC3_DICDI (Probable replication factor C subunit 3 OS=Dictyostelium discoideum GN=rfc3 PE=3 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 2.571e-9 Identity = 35/115 (30.43%), Postives = 65/115 (56.52%), Query Frame = 1 Query: 988 LWATKHQPKFLADFICNRDKALQLKALVKEGCGCNHFIFEGPSNVGKRSMIRAMLREVFGADKVQVTEEYKHIKLKGEMVENLQLRLQKSLHHVEVNLSEAKGYEKHVIVDLFKE 1332 LW K++P L + D ++ LK ++K G H + GPS GK++ I A+L+E++G + +++ +++ K +N+Q+ S +H+E+N EA Y++ VI + KE Sbjct: 2 LWIDKYKPTSLDKMDYHNDISINLKNMIKSG-DFPHLLVYGPSGAGKKTRILAVLQEIYGPNALKLKIDHRTFK-HPTSSKNIQITTISSHYHIEINPGEAGSYDRVVIQTIIKE 114 HSP 2 Score: 56.6102 bits (135), Expect = 7.003e-7 Identity = 29/79 (36.71%), Postives = 45/79 (56.96%), Query Frame = 1 Query: 1468 DLILTGWEEDILNIAKNIIREQSPRQLYVIRRKLQSLMIHDVPPDFIYKTLVAELTSLVDDSLCSGVAKLDSEYNVKSQ 1704 +L L WE I I K+ EQSP +L ++R KL L+ H +PP+ I+KTL+ E+ +D ++ + S Y +SQ Sbjct: 244 ELPLLDWENYISQIVKDCFEEQSPARLSIVRGKLYELLGHCIPPELIFKTLLLEIFKKLDHNMKFEIIHWASYYEHRSQ 322
BLAST of Ca_04698 vs. SwissProt
Match: RFC3_MOUSE (Replication factor C subunit 3 OS=Mus musculus GN=Rfc3 PE=2 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 1.843e-7 Identity = 36/115 (31.30%), Postives = 66/115 (57.39%), Query Frame = 1 Query: 988 LWATKHQPKFLADFICNRDKALQLKALVKEGCG-CNHFIFEGPSNVGKRSMIRAMLREVFGADKVQVTEEYKHIKLKGEMVENLQLRLQKSLHHVEVNLSEAKGYEKHVIVDLFK 1329 LW K++P LA ++++A QL+ LV+ CG H + GPS GK++ I +LRE++G ++ E++ I + + +++ S +H+EVN S+A ++ VI ++ K Sbjct: 3 LWVDKYRPSSLARLDYHKEQAAQLRNLVQ--CGDFPHLLVYGPSGAGKKTRIMCILRELYGIGVEKLRIEHQTITTPSK--KKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLK 113
BLAST of Ca_04698 vs. SwissProt
Match: RFC3_BOVIN (Replication factor C subunit 3 OS=Bos taurus GN=RFC3 PE=2 SV=1) HSP 1 Score: 56.9954 bits (136), Expect = 5.362e-7 Identity = 35/115 (30.43%), Postives = 65/115 (56.52%), Query Frame = 1 Query: 988 LWATKHQPKFLADFICNRDKALQLKALVKEGCG-CNHFIFEGPSNVGKRSMIRAMLREVFGADKVQVTEEYKHIKLKGEMVENLQLRLQKSLHHVEVNLSEAKGYEKHVIVDLFK 1329 LW K++P L ++++A QL+ LV+ CG H + GPS GK++ I +LRE++G ++ E++ I + + +++ S +H+EVN S+A ++ VI ++ K Sbjct: 3 LWVDKYRPCSLGQLDYHKEQAAQLRNLVQ--CGDFPHLLVYGPSGAGKKTRIMCILRELYGVGVEKLRIEHQTITTPSK--KKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLK 113
BLAST of Ca_04698 vs. SwissProt
Match: RFC3_HUMAN (Replication factor C subunit 3 OS=Homo sapiens GN=RFC3 PE=1 SV=2) HSP 1 Score: 56.225 bits (134), Expect = 9.146e-7 Identity = 35/115 (30.43%), Postives = 65/115 (56.52%), Query Frame = 1 Query: 988 LWATKHQPKFLADFICNRDKALQLKALVKEGCG-CNHFIFEGPSNVGKRSMIRAMLREVFGADKVQVTEEYKHIKLKGEMVENLQLRLQKSLHHVEVNLSEAKGYEKHVIVDLFK 1329 LW K++P L ++++A QL+ LV+ CG H + GPS GK++ I +LRE++G ++ E++ I + + +++ S +H+EVN S+A ++ VI ++ K Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQ--CGDFPHLLVYGPSGAGKKTRIMCILRELYGVGVEKLRIEHQTITTPSK--KKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLK 113
BLAST of Ca_04698 vs. TrEMBL
Match: G7J8L1_MEDTR (Replication factor C subunit OS=Medicago truncatula GN=MTR_3g118160 PE=4 SV=1) HSP 1 Score: 614.379 bits (1583), Expect = 2.373e-179 Identity = 342/514 (66.54%), Postives = 369/514 (71.79%), Query Frame = 1 Query: 1 MKAPSPTLKQSIGDRHMISPTRHN---KFRRRKNSGHWWFSP--WMKKEVDSYDMTH----SSNSPYYKGLTDQSLAIT----DEDDGDNXXXXXXXXXXXXXXXXXXYYKGLTDYSLVLDASWTTXXXXXXXXXXXXXXX------RGLIALPVPTSPSSLFSLNINFNTT-TTQSPSRDLVFFLSREDQPLMVXXXXXXXXXXXXXIHLNIQGKPLGVIDQSSLQATLEEIDD--DDVEGGKPLRVNYESETI-----LDNDVVLLIEEHQRKPLRERVTSDSEIVLLQQENADKRDLDLVIE------------------QVGNENI-------DLEEDLSDCWLDGRKAVSEQTVSSELHCDHKLKDAAEEGNLYDYLWATKHQPKFLADFICNRDKALQLKALVKEGCGCNHFIFEGPSNVGKRSMIRAMLREVFGADKVQVTEEYKHIKLKGEMVENLQLRLQKSLHHVEVNLSEAKGYEKHVIVDLFKETYGKVINSSLPCSPENCQ 1386 MK PSPT KQS+GDRHMISPTRHN RRRKNSGHWW S WMKKEVDSYDMTH SS+SPYYKGLTDQSLAI EDD +N YYKGLTDYSLV+DASW T RGLIALPVPTSPSSLFSLNINFNTT TTQ P+ D V FLS EDQ LMV IH +IQGKPL V + SS QATLE++DD DDVEGGKPLRVNYESETI L +DVVLL+EEH+RKPLRERVTS+SE VL QQENADK DL + E QVGNEN+ L+E+L D WL G+K SEQTVS EL C+HK + A EGN+Y+YLWATK+QPK LADFICNRDKALQLKALVK GCGCNHFIFEGP NVGKRSMIRAMLREVFGAD VQVTEEYK LKGEMVENL+LR+QKSLHHVEVNLSEAKGYEK+VIV+LFKETYGKVINSSLPCSPENCQ Sbjct: 40 MKVPSPTRKQSVGDRHMISPTRHNMSRSARRRKNSGHWWLSSISWMKKEVDSYDMTHHTHLSSDSPYYKGLTDQSLAIPHEEYQEDDNNNISSSLRPILLSSSPHSSPYYKGLTDYSLVIDASWATPHPHPHHNSSLSCYHDSSPYYRGLIALPVPTSPSSLFSLNINFNTTPTTQPPTHDFVVFLSPEDQSLMVTEPEATLEEAMVLIHPDIQGKPLRVNNPSSSQATLEKMDDGSDDVEGGKPLRVNYESETIPEKTILCDDVVLLVEEHKRKPLRERVTSNSETVLSQQENADKTDLGMEEEMELVMIEQEKPLRESRASQVGNENVLINTETTGLKEELRDFWLGGQKTASEQTVSMELPCEHKSMNTAVEGNMYEYLWATKYQPKILADFICNRDKALQLKALVKGGCGCNHFIFEGPPNVGKRSMIRAMLREVFGADGVQVTEEYKDFNLKGEMVENLKLRVQKSLHHVEVNLSEAKGYEKNVIVELFKETYGKVINSSLPCSPENCQ 553 HSP 2 Score: 44.2838 bits (103), Expect = 2.373e-179 Identity = 20/22 (90.91%), Postives = 22/22 (100.00%), Query Frame = 3 Query: 1383 SRLQPIESHCTTVRLSSPSTQQ 1448 SRLQPI+S+CTTVRLSSPSTQQ Sbjct: 592 SRLQPIQSYCTTVRLSSPSTQQ 613 HSP 3 Score: 220.705 bits (561), Expect = 1.503e-54 Identity = 121/207 (58.45%), Postives = 133/207 (64.25%), Query Frame = 1 Query: 1393 NLSNHIAPLYAFHHHQPNRNSLNDGDLILTGWEEDILNIAKNIIREQSPRQLYVIRRKLQSLMIHDVPPDFIYKTLVAELTSLVDDSLCSGVAKLDSEYNVKSQTVMCNVVDFTFLCFFSINLFLALLFIFKATLINREVTFFIPFQKGSEIKFESVKHYAPNKQGALDEKNNEVIKKNAMNYLKVEEFIAKFMSWYKNSSKSSDHV 2013 NL I L A + N+N+LND DL+LTGWE+DILNIA+NII EQSPRQLY IR+KLQSLMIHDVPPDFIYK+LVA LTSLVDDSLCSGV KL +Y KG IKFE VKHYA NKQG DEKNN++ KKNAMNYLKVEEFIAKFMSWYKNS KS+DHV Sbjct: 644 NLRQAIRSLEATYR---NKNALNDDDLVLTGWEDDILNIARNIITEQSPRQLYAIRKKLQSLMIHDVPPDFIYKSLVANLTSLVDDSLCSGVTKLGKDYT-----------------------------------------------KGGAIKFEGVKHYAQNKQGGSDEKNNKLTKKNAMNYLKVEEFIAKFMSWYKNSCKSNDHV 800
BLAST of Ca_04698 vs. TrEMBL
Match: K7KS98_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 279.256 bits (713), Expect = 4.963e-76 Identity = 193/480 (40.21%), Postives = 258/480 (53.75%), Query Frame = 1 Query: 1 MKAPSPTLKQ-SIGDRHM----ISPTRHN------KFRRRKNSGHWWFSPWMKKEVDSYDMTH---SSNSPYYKGLTDQSLAITDEDDGDNXXXXXXXXXXXXXXXXXXYYKGLTDYSLVLDASWTTXXXXXXXXXXXXXXXRGLIALPVPTSPSSLFSLNINFNTTTTQSPSRDLVFFLSREDQPLMVXXXXXXXXXXXXXIHLNIQGKPLGVIDQSSLQA--TLEEIDDDDVEGGKPLRVNYESETILDNDVVLLIEEHQRKPLRERVTSDSEIVLLQQENADKR--DLDLVIEQVGNENIDLEEDLSDCWLDGRKAVSEQTVSSELHCDHKLKDAAEEGNLYDYLWATKHQPKFLADFICNRDKALQLKALVKEGCGCNHFIFEGPSNVGKRSMIRAMLREVFGADKVQVTEEYKHIKLKGEMVENLQLRLQKSLHHVEVNLSEAKGYEKHVIVDLFKETYGKVINSSLPCSPENCQ 1386 M+ SP +KQ ++ D+ + ISP+RHN RRKN+ + + + YD + SSNSPYYKGLTDQSLAI + YYKGL + +SWT P+P P++ FS + + D LS D P + L+ + + + S +LEEID + ++ KPLR E ++L KPLRE V + E++++++ + + +++IE+ E + SD ++ +KA+S SE C+ E GN+Y Y WATK+QP L DFICN+D ALQLKA VKEGCGC+HFIFEGP +VGKRSMIRAMLREVFGADKVQV EE ++ +KGEMV NLQ+R++KSLHHVEVNLSE KGYEKHVIVDLFKETYG++IN+S PC PENC+ Sbjct: 10 MQLSSPRMKQPTVSDQSLSKTRISPSRHNIRSNKSGRSRRKNTNTSTSTSFPSFNLRPYDHINDHQSSNSPYYKGLTDQSLAIPEPQ-------LHTPTTTTDHLLSSPYYKGLLALKI---SSWTPDDH------------------PIPFPPNNSFSY---LPSPYYRGLLTDYSALLSSIDPPPFSIKTTPPGVPTLKDLILDAAHHHVDFLTEESQVGNYSLEEIDVEVMDEEKPLREISVLEDKASEKMILEEMVIVEKPLRESVLVEKEMIIVEKPLRESVLVEKEMIIEEKPLRERVSETERSD-HVEEKKALSLSV--SESQCE-------EGGNVYQYTWATKYQPMSLDDFICNKDNALQLKAKVKEGCGCSHFIFEGPPSVGKRSMIRAMLREVFGADKVQVIEECRNFNMKGEMVNNLQVRVKKSLHHVEVNLSETKGYEKHVIVDLFKETYGQLINNSEPCCPENCK 448 HSP 2 Score: 35.039 bits (79), Expect = 4.963e-76 Identity = 15/22 (68.18%), Postives = 19/22 (86.36%), Query Frame = 3 Query: 1383 SRLQPIESHCTTVRLSSPSTQQ 1448 S+LQP++ C TVRLSSPSTQ+ Sbjct: 487 SKLQPVKPLCITVRLSSPSTQE 508 HSP 3 Score: 173.326 bits (438), Expect = 2.752e-40 Identity = 97/190 (51.05%), Postives = 117/190 (61.58%), Query Frame = 1 Query: 1444 NRNSLNDGDLILTGWEEDILNIAKNIIREQSPRQLYVIRRKLQSLMIHDVPPDFIYKTLVAELTSLVDDSLCSGVAKLDSEYNVKSQTVMCNVVDFTFLCFFSINLFLALLFIFKATLINREVTFFIPFQKGSEIKFESVKHY--APNKQGALDEKNNEVIKKNAMNYLKVEEFIAKFMSWYKNSSKSSD 2007 N++++ D DLILTGWEEDI NIAK + EQSPRQLYVIRRKLQSLMIHDVPPDFIYK+LV ELT+LVD+SL +GVAKLD E F + S+IKF+++K + A NKQ DEKN + +N + YLKVEEFIAKFMSWYKNSS+ + Sbjct: 553 NKDAVKDDDLILTGWEEDIFNIAKKVAEEQSPRQLYVIRRKLQSLMIHDVPPDFIYKSLVPELTNLVDESLRAGVAKLDKE-----------------------------------------------FIRPSDIKFQTMKQFGHAQNKQAESDEKNYDSTNQNRLTYLKVEEFIAKFMSWYKNSSEKGN 695
BLAST of Ca_04698 vs. TrEMBL
Match: M5XSE1_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa025123mg PE=4 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 4.394e-38 Identity = 79/135 (58.52%), Postives = 99/135 (73.33%), Query Frame = 1 Query: 982 DYLWATKHQPKFLADFICNRDKALQLKALVKEGCGCNHFIFEGPSNVGKRSMIRAMLREVFGADKVQVTEEYKHIKLKGEMVENLQLRLQKSLHHVEVNLSEAKGYEKHVIVDLFKETYGKVINSSLPCSPENCQ 1386 +Y WA K+QP L DFICN+DKA QL+AL + G C HFIFEGP VGKR+MI AMLRE FG D + EE+K LKGEMV ++++ +++S HVEVNLSE KGYEKHVIV+L +ET K N +LPC +NC+ Sbjct: 244 EYAWADKYQPLCLEDFICNKDKATQLQALARGGA-CGHFIFEGPPGVGKRTMIWAMLREAFGRDTIHAREEFKAFSLKGEMVGSIEVHVKQSPQHVEVNLSELKGYEKHVIVELMRETQDKTTNKALPCGLDNCR 377 HSP 2 Score: 100.908 bits (250), Expect = 1.736e-18 Identity = 64/185 (34.59%), Postives = 95/185 (51.35%), Query Frame = 1 Query: 1462 DGDLILTGWEEDILNIAKNIIREQSPRQLYVIRRKLQSLMIHDVPPDFIYKTLVAELTSLVDDSLCSGVAKLDSEYNVKSQTVMCNVVDFTFLCFFSINLFLALLFIFKATLINREVTFFIPFQKGSEIKFESVKHYAPNKQGALDEKNNEVIKKNAMNYLKVEEFIAKFMSWYK--NSSKSSDH 2010 + +ILTGWE++I +IAKN+I EQSP+QLY+IR KLQ+L++H V P+FI+++LVAEL +DDSL + + EYN + E FES K+ + ++ N+ +K+ +L++EEFIAKFMS YK ++KS H Sbjct: 488 ENQVILTGWEDNIADIAKNMIEEQSPKQLYIIRGKLQNLIVHGVCPEFIFQSLVAELKKHLDDSLQDRIESMYDEYN-----------------------------------------------RNDENMFESDKY----DHEEMSKRLNDHSRKSIKQFLRIEEFIAKFMSCYKGCTNTKSLPH 621
BLAST of Ca_04698 vs. TrEMBL
Match: I1QW74_ORYGL (Uncharacterized protein OS=Oryza glaberrima PE=4 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 4.858e-37 Identity = 92/248 (37.10%), Postives = 144/248 (58.06%), Query Frame = 1 Query: 985 YLWATKHQPKFLADFICNRDKALQL-------KALVKEGCGCNHFIFEGPSNVGKRSMIRAMLREVFGADKVQVTEEYKHIKLKGEMVENLQLRLQKSLHHVEV--NLSEAKGYEKHVIVDLFKETYGKVINSSLPCSPENCQGYNLS---NHIAPLYAFHHHQPNRNSLNDGDLILTGWEEDILNIAKNIIREQSPRQLYVIRRKLQSLMIHDVPPDFIYKTLVAELTSLVDDSLCSGVAKLDSEYN 1692 Y+WA K++P FL DFICN+D AL+L + +E CNH IFEGP++VGKRSM+ A++R+ F D +++ E+ K +LKGE+ +++ +R++ S HHVE +L + + ++ K + S+ + + +S N + +F + +G ILTGWEE+I N+AK I+ E SP+QLYVIR K++ L+ H+V P FI+ LVAEL D+ + + +L SE N Sbjct: 286 YIWADKYRPNFLNDFICNKDAALELYNQGFTPQVTAQE---CNHIIFEGPTSVGKRSMVSALIRDAFATDNLKIEEQTKRFELKGEIAKHIDIRVKISSHHVEAVRHLCKVVTLKPPSSDEIIKVLEYIAVQESIDLPRDIARRITMSSGNNLRQAIRSFEATWKANYAFLEGHAILTGWEEEISNVAKKILEEPSPKQLYVIRGKIRKLIEHNVSPYFIFSNLVAELKRDRDEEFQNSIDQLASELN 530
BLAST of Ca_04698 vs. TrEMBL
Match: M0ZNJ5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400001792 PE=4 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 9.162e-36 Identity = 133/436 (30.50%), Postives = 207/436 (47.48%), Query Frame = 1 Query: 583 GKPLGVIDQSSLQATLEEIDDDDVEGGKPLRVNYESETILDNDVVLLIEEHQRKPLRERVTSDSEI---------VLLQQENADKRDLDLV-IEQVGNENIDLEEDLSDCWLDGRKAVSEQTVSSELHCDHKLKDAAEEGNLYDYLWATKHQPKFLADFICNRDKALQLKALVKEGCGCNHFIFEGPSNVGKRSMIRAMLREVFGADKVQVTEEYKHIKLKGEMVENLQLRLQKSLHHVEVNLSEAKGYEKHVIVDLFKETYGKVINSSLPCSPENCQGYNL---------------------------------SNHIAPLYA----FHHHQPNRNSLNDGDLILTGWE------EDILNIAKN-------IIREQSPR---QLYVIRRKLQSLMIHDVPPDFIYKTLVAELTSLVDDSLCSGVAKLDSEYNVKS 1701 G+ LG+ + + T I ++ GKPLR + + N++VLL P R VTS ++ ++LQ A++ + L+ + +N+D E+D ++ V + TV E D + + WA K++P L DF+CNR+ AL+LKAL + HFIF G VGKR+MI A+LR+++G DKVQ ++ K LKGE V ++++ +++S H+E+NLSE KGYEKHV+V L KE K + S P +PENC+ L S + P+ + FH +P+ + + D + E + + IA N IR +LY IR KLQ+L+ H+V +FI+ T+ EL S +DD + L +YN+ S Sbjct: 171 GEELGIHSKGVRRRTKSRISQ--LDQGKPLRER--ASEMQTNNIVLLPAAPAPAPARP-VTSPIKLSLPSPPPTPLILQTSQAEEIESVLLPLPASSTQNVDDEKDTTN--------VKDMTVP-EKQIDKR------------FTWADKYRPNALKDFLCNRNIALELKALAETDGSIRHFIFAGLPGVGKRTMIFALLRKIYGHDKVQARDKCKVFHLKGESVPSIKVNVKESNKHLEINLSETKGYEKHVLVQLIKERKHKSSSRSAPPNPENCKAIILGEADKLSTDALLYIKWMIERYEGCYKVFFCCSDSTKLQPIKSICKVFHLQKPSDDEIVDVLKFIAQQEGIELPHQMAVRIASNSKSNLRQAIRSFEATWHFKLYDIRGKLQNLIEHNVSAEFIFNTVFEELKSNLDDQFHKDMDILKMKYNINS 580
BLAST of Ca_04698 vs. TrEMBL
Match: F6I1E3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0045g00530 PE=4 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 1.264e-32 Identity = 72/134 (53.73%), Postives = 94/134 (70.15%), Query Frame = 1 Query: 964 EEGNLYDYLWATKHQPKFLADFICNRDKALQLKALVKEGCGCNHFIFEGPSNVGKRSMIRAMLREVFGADKVQVTEEYKHIKLKGEMVENLQLRLQKSLHHVEVNLSEAKGYEKHVIVDLFKETYGKVINSSLP 1365 E+G D+ WA K++PK L+DFICNRDKA+QL+ LVK HFIFEG + VGK++MI A LREVFG D+VQ EE K LKGE + ++++ ++ S HH+EVNLS+ KGYEK VIV L ET N ++P Sbjct: 224 EKGKNKDFTWADKYRPKALSDFICNRDKAVQLQDLVKVEQH-PHFIFEGLAGVGKKTMISAFLREVFGHDRVQTREECKEFYLKGESIRSIRVNVKVSCHHIEVNLSDLKGYEKQVIVQLIHETGNNRANKAVP 356 HSP 2 Score: 28.1054 bits (61), Expect = 1.264e-32 Identity = 12/22 (54.55%), Postives = 17/22 (77.27%), Query Frame = 3 Query: 1383 SRLQPIESHCTTVRLSSPSTQQ 1448 S+LQPI+S CT V+L PS ++ Sbjct: 394 SKLQPIKSLCTMVQLLPPSDEE 415 HSP 3 Score: 66.6254 bits (161), Expect = 3.628e-8 Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = 1 Query: 1474 ILTGWEEDILNIAKNIIREQSPRQLYVIRRKLQSLMIHDVPPDFIYKTLVAE 1629 I TGWE+DI IAKNII EQ+P+QLY IR KLQ L H+V +FIYK V++ Sbjct: 470 IRTGWEDDIARIAKNIIEEQTPKQLYNIRGKLQKLTEHNVASEFIYKVRVSQ 521
BLAST of Ca_04698 vs. TrEMBL
Match: B9IB37_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_775272 PE=4 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 1.048e-31 Identity = 134/493 (27.18%), Postives = 208/493 (42.19%), Query Frame = 1 Query: 10 PSPTLKQSIGDRHM------------ISPTRHNKFRRRKNSGHWWFSPWMKKEVDSYDMTHSSNSPY---YKGLTDQSLAITDEDDGDNXXXXXXXXXXXXXXXXXXYYKGLTDYSLVLDASWTTXXXXXXXXXXXXXXXRGLIALPVPTSPSSLFSLNINFNTTTTQSPSRDLVFFLSREDQPLMVXXXXXXXXXXXXXIHLNIQGKPLGVIDQSSLQATLEEIDDDDVEGGKPL-----------------RVNYESETILDNDVVLLIEEHQRKPLRERVT-SDSEIVLLQQENADKRDLDLVIEQVGNENIDLEEDLSDCWLDGRKAVSEQTVSSELHCDHKLKDAAEEGNLYDYLWATKHQPKFLADFICNRDKALQLKALVKEGCGCNHFIFEGPSNVGKRSMIRAMLREVFGADKVQVTEEYKHIKLKGEMVENLQLRLQKSLHHVEVNLSEAKGYEKHVIVDLFKET---YGKVINSSLPCSPEN 1380 PSP + QS D ++ + P+ + + + +W + ++ ++ + ++ + + LT++SL + N YYKGL DYSL++ R + P PTSP + T T S +F + + N++GK +++ A + D ++ KP R E ET N + ++ EE KPLRERV+ S N D RD+ DC + ++ D K + A K+QPK L DFICNRD+A++++ ++++ CNHFIFEGP+ VGKR+MIRAML+E FG ++VQ EE K LKGE + ++Q+R++ S HVEVNLS+ KGYEK VIV+L KET + K I S+ P +P++ Sbjct: 46 PSPAIPQSTSDPYLSCTSSPSKAAPRLPPSNQSAYSNHSSKSSYWQAWSNIGKLGTFILPERKSTDWSSRHSNLTEESL------EAHNRRQEAINILHDKNAKCSPYYKGLVDYSLIISRE------------------RHHLPTP-PTSPC-----RESHATAVTSSSLSTFIFKMQEWSSCFSISSKSN-----------NVKGK------ENNAPAAVIATSTDKIKPMKPRPAAPSHSASSFSSQTSGRTTLEKETRDVNALRVVTEE---KPLRERVSESKPPAAAPSLTNDDHRDI------------------LDC----------PSTHDVMNIDRK------------FTLANKYQPKALKDFICNRDQAIRMQGVMRD-FDCNHFIFEGPAGVGKRTMIRAMLQEAFGQERVQAREECKSFNLKGEQIGSIQVRVKVSSQHVEVNLSDLKGYEKQVIVELIKETHNNHNKRIISNNPINPKS 447 HSP 2 Score: 89.7373 bits (221), Expect = 4.002e-15 Identity = 59/182 (32.42%), Postives = 95/182 (52.20%), Query Frame = 1 Query: 1474 ILTGWEEDILNIAKNIIREQSPRQLYVIRRKLQSLMIHDVPPDFIYKTLVAELTSLVDDSLCSGVAKLDSEYNVKSQTVMCNVVDFTFLCFFSINLFLALLFIFKATLINREVTFFIPFQKGSEIKFESVKHYAPNKQGALDEKNNEVIKKNAMN-YLKVEEFIAKFMSWYKNSSKSSDHVQ 2016 ILTGWE+DI NIAK+++ EQSP+QLY+IR KLQ+L+ HDV PDF +++L+ EL +D+ + L +YN ++ E++ +E+ F +H K + ++ +KNA + ++++EEFIAKFMS+YK S ++ +Q Sbjct: 568 ILTGWEDDIANIAKDMVEEQSPKQLYIIRGKLQNLIEHDVSPDFFFESLLGELKKHLDEPFQLQLDGLHKDYNRNDGNML-------------------------------EIS-------ENELIFLRSRHEEAGK------RLHDPARKNADHLFVRIEEFIAKFMSFYKISVTNNKSIQ 705
BLAST of Ca_04698 vs. TrEMBL
Match: B9T608_RICCO (Replication factor C subunit, putative OS=Ricinus communis GN=RCOM_0160810 PE=4 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 9.811e-30 Identity = 79/206 (38.35%), Postives = 123/206 (59.71%), Query Frame = 1 Query: 787 LQQENADKRDLDLVIEQVGNENIDLEEDLSDCWLDGRKAVSEQTVSSELHCDHKLKDAAEEGNLYDYLWATKHQPKFLADFICNRDKALQLKALVKEGCGCNHFIFEGPSNVGKRSMIRAMLREVFGADKVQVTEEYKHIKLKGEMVENLQLRLQKSLHHVEVNLSEAKGYEKHVIVDLFKETYGKVINSSLPCSPENCQGYNLSN 1404 L+++ DK D L+I NE L E +S + + + + + D K + + ++ WA K++PK L FICN+ A +++ L+K G CNHFIFEG VGKR+MIRAM++E +G + VQ EE K +L+GE + ++++R++ S H+EVNLS+ KGYEKH++V+L KET K + LP ++C+ L N Sbjct: 236 LKRKETDKDDDLLII----NEEKPLRERVSIS--ESKSPPPPEPLQPASNVDEKDETVIDMLVEREFTWADKYRPKTLEAFICNQSTAAKVQGLIK-GIECNHFIFEGSPGVGKRTMIRAMIQEAYGPETVQTREESKAFRLRGESIGSIEVRIKVSSQHIEVNLSDMKGYEKHIVVELIKETDDKKSRNYLP-KHDSCRAIILYN 433 HSP 2 Score: 85.8853 bits (211), Expect = 5.779e-14 Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 1 Query: 1474 ILTGWEEDILNIAKNIIREQSPRQLYVIRRKLQSLMIHDVPPDFIYKTLVAELTSLVDDSLCSGVAKLDSEYNVKSQTVM 1713 ILTGWE+DI NIAKN+I+EQSP+QLY+IR KLQ L+ HDV P+FI+ TL+ EL +D+ + L +YN K ++ Sbjct: 542 ILTGWEDDIANIAKNMIQEQSPKQLYIIRGKLQKLIEHDVSPEFIFNTLLDELKKHLDEFCQGQLDLLYKDYNRKDGNML 621
BLAST of Ca_04698 vs. TrEMBL
Match: K4AY00_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc01g081080.1 PE=4 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 1.085e-28 Identity = 94/276 (34.06%), Postives = 145/276 (52.54%), Query Frame = 1 Query: 583 GKPLGVIDQSSLQATLEEIDDDDVEGGKPLRVNYESETILDNDVVLLIEEHQ-----RKPLRERVTSDSEIVLLQQENADKR--DLDLVIEQVGNENIDLEEDLSDCWLDGRKAVSEQTVSSELHCDHKLKDAAEEGNLYDYLWATKHQPKFLADFICNRDKALQLKALVKEGCGCNHFIFEGPSNVGKRSMIRAMLREVFGADKVQVTEEYKHIKLKGEMVENLQLRLQKSLHHVEVNLSEAKGYEKHVIVDLFKETYGKVINSSLPCSPE-NCQ 1386 G+ LG+ + + + I ++ GKPLR + + N++VLL P + V S L+ Q + D+ + L + +++ E+D ++ V + TV E H D + + WA K++P L F+CNR+ AL+LKAL + HFIF G VGKR+MI A+LRE++G DKVQ ++ K LKGE V ++++ +++S HVE+NLSE KGYEKHV+V L KE K + S P +P+ NC+ Sbjct: 173 GEELGIHSKVVRRRSKSRISQ--LDQGKPLRER--ASEMQTNNIVLLPAAPAPAPPVTSPTKLSVPSPPPTPLILQTSQDEEIESVQLPLPGSPTQSVHDEKDTTN--------VKDTTVPEE-HIDKR------------FTWADKYRPNALKHFLCNRNIALELKALAETDSSIRHFIFAGLPGVGKRTMIFALLREIYGHDKVQARDKCKVFHLKGESVPSIKVNVKESNKHVEINLSETKGYEKHVLVQLIKERKHKSSSRSAPSNPDHNCK 423 HSP 2 Score: 81.6481 bits (200), Expect = 1.090e-12 Identity = 43/85 (50.59%), Postives = 56/85 (65.88%), Query Frame = 1 Query: 1453 SLNDGDLILTGWEEDILNIAKNIIREQSPRQLYVIRRKLQSLMIHDVPPDFIYKTLVAELTSLVDDSLCSGVAKLDSEYNVKSQT 1707 SL + I TGWE+DI IAKNII EQSP+QLY IR KLQ+L+ H+V +FI+ T+ EL S +DD + L +YNV+ T Sbjct: 531 SLTENQEIKTGWEDDIAEIAKNIIEEQSPKQLYDIRGKLQNLIEHNVSAEFIFNTVFEELKSNLDDQFHKEMDILKLKYNVRKFT 615
BLAST of Ca_04698 vs. TrEMBL
Match: Q0IVF3_ORYSJ (Os10g0574500 protein OS=Oryza sativa subsp. japonica GN=Os10g0574500 PE=4 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 3.490e-27 Identity = 62/134 (46.27%), Postives = 92/134 (68.66%), Query Frame = 1 Query: 985 YLWATKHQPKFLADFICNRDKALQLKALVKEGCGCNHFIFEGPSNVGKRSMIRAMLREVFGADKVQVTEEYKHIKLKGEMVENLQLRLQKSLHHVEVNLSEAKGYEKHVIVDLFKETYGKVINSSLPCSPENCQ 1386 Y+WA K++P FL DFICN+D AL+L V CNH IFEGP++VGKRSM+ A++ + F D +++ E+ K +LKGE+ +++ +R++ S HHVEVNL++ GYEKHVI L E+ + + + CS NC+ Sbjct: 177 YIWADKYRPNFLNDFICNKDAALELYNQVTAQ-ECNHIIFEGPTSVGKRSMVSALIWDAFATDNLKIEEQTKRFELKGEIAKHIDIRVKISSHHVEVNLADIHGYEKHVITTLLNES---IPSPNSICSHANCR 306
BLAST of Ca_04698 vs. DB:Swiss
Match: RFC3_ARATH (Replication factor C subunit 3 OS=Arabidopsis thaliana OX=3702 GN=RFC3 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.135e-12 Identity = 44/138 (31.88%), Postives = 77/138 (55.80%), Query Frame = 1 Query: 988 LWATKHQPKFLADFICNRDKALQLKALVKEGCGCNHFIFEGPSNVGKRSMIRAMLREVFGADKVQVTEEYKHIKL-KGEMVENLQLRLQKSLHHVEVNLSEAKGYEKHVIVDLFKETYGKVINSSLPCSPENCQGYNL 1398 LW K++PK L I + D A +LK LV E C H +F GPS GK+++I A+L++++GA +V E + K+ G +L+L S +HVE+ S+A +++++ ++ KE + + P + +GY + Sbjct: 2 LWVDKYRPKSLDKVIVHEDIAQKLKKLVSEQ-DCPHLLFYGPSGSGKKTLIMALLKQIYGASAEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKE-----MAKNRPIDTKGKKGYKV 133
BLAST of Ca_04698 vs. DB:Swiss
Match: RFC5_ORYSJ (Replication factor C subunit 5 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC5 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.038e-11 Identity = 41/116 (35.34%), Postives = 67/116 (57.76%), Query Frame = 1 Query: 988 LWATKHQPKFLADFICNRDKALQLKALVKEGCGCNHFIFEGPSNVGKRSMIRAMLREVFGADKVQVTEEYKHIKL-KGEMVENLQLRLQKSLHHVEVNLSEAKGYEKHVIVDLFKE 1332 LW K++PK L + A LK LV E C H +F GPS GK++++ A+++++FGA +V E K K+ G ++L + S HHVE+N S+A +++V+ ++ KE Sbjct: 2 LWVDKYRPKTLDKVTVHDQVAQNLKKLVAEQ-DCPHLLFYGPSGSGKKTLVMALIKQMFGAGADKVKMENKTWKIDTGSRNIEIELAMLSSAHHVEMNPSDAGFQDRYVVQEVIKE 116
BLAST of Ca_04698 vs. DB:Swiss
Match: RFC3_DICDI (Probable replication factor C subunit 3 OS=Dictyostelium discoideum OX=44689 GN=rfc3 PE=3 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 2.521e-9 Identity = 35/115 (30.43%), Postives = 65/115 (56.52%), Query Frame = 1 Query: 988 LWATKHQPKFLADFICNRDKALQLKALVKEGCGCNHFIFEGPSNVGKRSMIRAMLREVFGADKVQVTEEYKHIKLKGEMVENLQLRLQKSLHHVEVNLSEAKGYEKHVIVDLFKE 1332 LW K++P L + D ++ LK ++K G H + GPS GK++ I A+L+E++G + +++ +++ K +N+Q+ S +H+E+N EA Y++ VI + KE Sbjct: 2 LWIDKYKPTSLDKMDYHNDISINLKNMIKSG-DFPHLLVYGPSGAGKKTRILAVLQEIYGPNALKLKIDHRTFK-HPTSSKNIQITTISSHYHIEINPGEAGSYDRVVIQTIIKE 114
BLAST of Ca_04698 vs. DB:Swiss
Match: RFC3_MOUSE (Replication factor C subunit 3 OS=Mus musculus OX=10090 GN=Rfc3 PE=1 SV=1) HSP 1 Score: 57.3806 bits (137), Expect = 1.924e-7 Identity = 36/115 (31.30%), Postives = 66/115 (57.39%), Query Frame = 1 Query: 988 LWATKHQPKFLADFICNRDKALQLKALVKEGCG-CNHFIFEGPSNVGKRSMIRAMLREVFGADKVQVTEEYKHIKLKGEMVENLQLRLQKSLHHVEVNLSEAKGYEKHVIVDLFK 1329 LW K++P LA ++++A QL+ LV+ CG H + GPS GK++ I +LRE++G ++ E++ I + + +++ S +H+EVN S+A ++ VI ++ K Sbjct: 3 LWVDKYRPSSLARLDYHKEQAAQLRNLVQ--CGDFPHLLVYGPSGAGKKTRIMCILRELYGIGVEKLRIEHQTITTPSK--KKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLK 113
BLAST of Ca_04698 vs. DB:Swiss
Match: RFC3_BOVIN (Replication factor C subunit 3 OS=Bos taurus OX=9913 GN=RFC3 PE=2 SV=1) HSP 1 Score: 55.8398 bits (133), Expect = 6.772e-7 Identity = 35/115 (30.43%), Postives = 65/115 (56.52%), Query Frame = 1 Query: 988 LWATKHQPKFLADFICNRDKALQLKALVKEGCG-CNHFIFEGPSNVGKRSMIRAMLREVFGADKVQVTEEYKHIKLKGEMVENLQLRLQKSLHHVEVNLSEAKGYEKHVIVDLFK 1329 LW K++P L ++++A QL+ LV+ CG H + GPS GK++ I +LRE++G ++ E++ I + + +++ S +H+EVN S+A ++ VI ++ K Sbjct: 3 LWVDKYRPCSLGQLDYHKEQAAQLRNLVQ--CGDFPHLLVYGPSGAGKKTRIMCILRELYGVGVEKLRIEHQTITTPSK--KKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLK 113
BLAST of Ca_04698 vs. DB:Swiss
Match: RFC3_HUMAN (Replication factor C subunit 3 OS=Homo sapiens OX=9606 GN=RFC3 PE=1 SV=2) HSP 1 Score: 55.0694 bits (131), Expect = 9.735e-7 Identity = 35/115 (30.43%), Postives = 65/115 (56.52%), Query Frame = 1 Query: 988 LWATKHQPKFLADFICNRDKALQLKALVKEGCG-CNHFIFEGPSNVGKRSMIRAMLREVFGADKVQVTEEYKHIKLKGEMVENLQLRLQKSLHHVEVNLSEAKGYEKHVIVDLFK 1329 LW K++P L ++++A QL+ LV+ CG H + GPS GK++ I +LRE++G ++ E++ I + + +++ S +H+EVN S+A ++ VI ++ K Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQ--CGDFPHLLVYGPSGAGKKTRIMCILRELYGVGVEKLRIEHQTITTPSK--KKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLK 113 The following BLAST results are available for this feature:
BLAST of Ca_04698 vs. SwissProt
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs Swissprot) Total hits: 6
BLAST of Ca_04698 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL) Total hits: 25
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BLAST of Ca_04698 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot) Total hits: 6
InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
Sequences
The
following sequences are available for this feature:
mRNA sequence >Ca_04698_v1.0_kabuli ID=Ca_04698_v1.0_kabuli; Name=Ca_04698; organism=Cicer arietinum; type=mRNA; length=2034bpback to top protein sequence of Ca_04698_v1.0_kabuli >Ca_04698_v1.0_kabuli ID=Ca_04698_v1.0_kabuli; Name=Ca_04698_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=677bpback to top mRNA from alignment at Ca5:30232201..30237171- Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.>Ca_04698_v1.0_kabuli ID=Ca_04698_v1.0_kabuli; Name=Ca_04698; organism=Cicer arietinum; type=mRNA; length=4971bp; location=Sequence derived from: Ca5:30232201..30237171- (Cicer arietinumback to top Coding sequence (CDS) from alignment at Ca5:30232201..30237171- >Ca_04698_v1.0_kabuli ID=Ca_04698_v1.0_kabuli; Name=Ca_04698; organism=Cicer arietinum; type=CDS; length=2034bp; location=Sequence derived from: Ca5:30232201..30237171- (Cicer arietinumback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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