Ca_04851, Ca_04851_v1.0_kabuli (mRNA) Cicer arietinum
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Ca_04851 vs. TrEMBL
Match: K7KSK3_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 1.404e-23 Identity = 62/91 (68.13%), Postives = 63/91 (69.23%), Query Frame = 1 Query: 1 MITRSNLAEQLRDYQIRSKHDWAXXXXXXXXXXXXXXXRVDVVVFVIWELVILAFLVFSVVSLYFKHIRLAFXXXXXXXXXXXXMKITKQV 273 MITRSNL EQLR+YQIRSKHDWA RVDVVVFVIWELVILAFLVFSVVSLYFKHIRLAF MKITKQV Sbjct: 1 MITRSNLVEQLREYQIRSKHDWASVSFFSSTSSNITTSRVDVVVFVIWELVILAFLVFSVVSLYFKHIRLAFILVCITILLLLCMKITKQV 91
BLAST of Ca_04851 vs. TrEMBL
Match: I1JSX6_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 3.127e-23 Identity = 61/91 (67.03%), Postives = 63/91 (69.23%), Query Frame = 1 Query: 1 MITRSNLAEQLRDYQIRSKHDWAXXXXXXXXXXXXXXXRVDVVVFVIWELVILAFLVFSVVSLYFKHIRLAFXXXXXXXXXXXXMKITKQV 273 MITRSNL EQLR+YQIRSKHDWA RVDVV+FVIWELVILAFLVFSVVSLYFKHIRLAF MKITKQV Sbjct: 1 MITRSNLVEQLREYQIRSKHDWASVSFFSSTSSNITTSRVDVVLFVIWELVILAFLVFSVVSLYFKHIRLAFILVCITILLLLCMKITKQV 91
BLAST of Ca_04851 vs. TrEMBL
Match: D7KJ21_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_889497 PE=4 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 2.241e-21 Identity = 57/91 (62.64%), Postives = 61/91 (67.03%), Query Frame = 1 Query: 1 MITRSNLAEQLRDYQIRSKHDWAXXXXXXXXXXXXXXXRVDVVVFVIWELVILAFLVFSVVSLYFKHIRLAFXXXXXXXXXXXXMKITKQV 273 MITRSNLAEQLR+YQIRSKHDWA RVDVVVFVIWELVILAF VFS VSLYFK ++LAF MK+TKQV Sbjct: 1 MITRSNLAEQLREYQIRSKHDWASVSFFSSTSSFSSSSRVDVVVFVIWELVILAFFVFSAVSLYFKRLQLAFILICVTLMLLICMKVTKQV 91
BLAST of Ca_04851 vs. TrEMBL
Match: B7FH67_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=4 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 2.927e-21 Identity = 61/92 (66.30%), Postives = 63/92 (68.48%), Query Frame = 1 Query: 1 MITRSNLAEQLRDYQIRSKHDWAXXXXXXXXXXXXXXX-RVDVVVFVIWELVILAFLVFSVVSLYFKHIRLAFXXXXXXXXXXXXMKITKQV 273 MITRSNLAEQLRDYQIRSKHDWA +VDVVVFVIWELVILAFLVFSVVSL FKHI+LAF MKITKQV Sbjct: 1 MITRSNLAEQLRDYQIRSKHDWASVSFFSSTSSNITNTSKVDVVVFVIWELVILAFLVFSVVSLCFKHIQLAFILVCITVLLLLCMKITKQV 92
BLAST of Ca_04851 vs. TrEMBL
Match: M4CVJ6_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra008243 PE=4 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 8.516e-21 Identity = 57/91 (62.64%), Postives = 60/91 (65.93%), Query Frame = 1 Query: 1 MITRSNLAEQLRDYQIRSKHDWAXXXXXXXXXXXXXXXRVDVVVFVIWELVILAFLVFSVVSLYFKHIRLAFXXXXXXXXXXXXMKITKQV 273 MITRS LAEQLR+YQI+SKHDWA RVDVVVFVIWELVILAFLVFS VSLYFK + LAF MKITKQV Sbjct: 1 MITRSKLAEQLREYQIKSKHDWASVSIFSSSSNFSSSSRVDVVVFVIWELVILAFLVFSAVSLYFKRLELAFILLCVCLLLFVCMKITKQV 91
BLAST of Ca_04851 vs. TrEMBL
Match: R0GK95_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10010710mg PE=4 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 1.453e-20 Identity = 58/91 (63.74%), Postives = 62/91 (68.13%), Query Frame = 1 Query: 1 MITRSNLAEQLRDYQIRSKHDWAXXXXXXXXXXXXXXXRVDVVVFVIWELVILAFLVFSVVSLYFKHIRLAFXXXXXXXXXXXXMKITKQV 273 MITRSNLAEQLR+YQIRSKHDWA RVDVVVFVIWELVILAFLVFS VSLYFK ++LAF MK+TKQV Sbjct: 1 MITRSNLAEQLREYQIRSKHDWASVSFFSSTSSFSSS-RVDVVVFVIWELVILAFLVFSAVSLYFKRLQLAFILVCVTLLLLICMKVTKQV 90
BLAST of Ca_04851 vs. TrEMBL
Match: M4EAL1_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra025820 PE=4 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 1.453e-20 Identity = 58/91 (63.74%), Postives = 62/91 (68.13%), Query Frame = 1 Query: 1 MITRSNLAEQLRDYQIRSKHDWAXXXXXXXXXXXXXXXRVDVVVFVIWELVILAFLVFSVVSLYFKHIRLAFXXXXXXXXXXXXMKITKQV 273 MITRSNLAEQLR+YQIRSKHDWA RVDVVVFVIWELVILAFLVFS VSLYFK ++LAF MK+TKQV Sbjct: 1 MITRSNLAEQLREYQIRSKHDWASVSFFSSTSSFSSS-RVDVVVFVIWELVILAFLVFSAVSLYFKRLQLAFILVCVTLLLLVCMKVTKQV 90
BLAST of Ca_04851 vs. TrEMBL
Match: A4URF7_BRAJU (Putative uncharacterized protein OS=Brassica juncea PE=4 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 1.453e-20 Identity = 59/91 (64.84%), Postives = 61/91 (67.03%), Query Frame = 1 Query: 1 MITRSNLAEQLRDYQIRSKHDWAXXXXXXXXXXXXXXXRVDVVVFVIWELVILAFLVFSVVSLYFKHIRLAFXXXXXXXXXXXXMKITKQV 273 MITRSNLAEQLR+YQIRSKHDWA RVDVVVFVIWELVILAFLVFS VSLYFK + LAF MKITKQV Sbjct: 1 MITRSNLAEQLREYQIRSKHDWASVSFFSSTSNFSSS-RVDVVVFVIWELVILAFLVFSAVSLYFKRLELAFILVCVTLLLLLCMKITKQV 90
BLAST of Ca_04851 vs. TrEMBL
Match: M5Y5H2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013736mg PE=4 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 2.478e-20 Identity = 57/91 (62.64%), Postives = 63/91 (69.23%), Query Frame = 1 Query: 1 MITRSNLAEQLRDYQIRSKHDWAXXXXXXXXXXXXXXXRVDVVVFVIWELVILAFLVFSVVSLYFKHIRLAFXXXXXXXXXXXXMKITKQV 273 MITRSNLAEQLR+YQIRSKHDWA RVDVV+FVIWELVILAFLVFS VSLYF+H++LAF +KITKQV Sbjct: 1 MITRSNLAEQLREYQIRSKHDWASVSFFSSTSNHTLS-RVDVVLFVIWELVILAFLVFSAVSLYFRHMQLAFLLLCIAMLLLLCIKITKQV 90
BLAST of Ca_04851 vs. TrEMBL
Match: A9PEN2_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_652180 PE=4 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 2.478e-20 Identity = 56/91 (61.54%), Postives = 62/91 (68.13%), Query Frame = 1 Query: 1 MITRSNLAEQLRDYQIRSKHDWAXXXXXXXXXXXXXXXRVDVVVFVIWELVILAFLVFSVVSLYFKHIRLAFXXXXXXXXXXXXMKITKQV 273 MITRSNLA+QLR+YQIRSKHDWA RVDVVVFVIWEL I+AFLVFS VSLYF+H+RLAF MK+TKQV Sbjct: 1 MITRSNLADQLREYQIRSKHDWASVSFFSSASNISSS-RVDVVVFVIWELFIIAFLVFSAVSLYFRHMRLAFILVCITLLLLICMKVTKQV 90 The following BLAST results are available for this feature:
BLAST of Ca_04851 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL) Total hits: 22
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BLAST of Ca_04851 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
Sequences
The
following sequences are available for this feature:
mRNA sequence >Ca_04851_v1.0_kabuli ID=Ca_04851_v1.0_kabuli; Name=Ca_04851; organism=Cicer arietinum; type=mRNA; length=324bpback to top protein sequence of Ca_04851_v1.0_kabuli >Ca_04851_v1.0_kabuli ID=Ca_04851_v1.0_kabuli; Name=Ca_04851_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=107bpback to top mRNA from alignment at Ca5:31492486..31494594- Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.>Ca_04851_v1.0_kabuli ID=Ca_04851_v1.0_kabuli; Name=Ca_04851; organism=Cicer arietinum; type=mRNA; length=2109bp; location=Sequence derived from: Ca5:31492486..31494594- (Cicer arietinumback to top Coding sequence (CDS) from alignment at Ca5:31492486..31494594- >Ca_04851_v1.0_kabuli ID=Ca_04851_v1.0_kabuli; Name=Ca_04851; organism=Cicer arietinum; type=CDS; length=324bp; location=Sequence derived from: Ca5:31492486..31494594- (Cicer arietinumback to top |