Ca_04852, Ca_04852_v1.0_kabuli (mRNA) Cicer arietinum
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Ca_04852 vs. TrEMBL
Match: C6T0E1_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 5.859e-30 Identity = 67/84 (79.76%), Postives = 73/84 (86.90%), Query Frame = 1 Query: 73 HAMKRKDSFIQFFAMTGILLLSMRSLGQKYKIHGLEEDTHALREEHGSLTDRMKNIKRALLHEASQDSTGILASRLRSIFNEQH 324 HA +RKDSFIQFFAMTGILLLSMRSL QKYKIHGL+ED HALR +HGSLTDR+ NIK LL EASQDSTG+ ASRLR +F EQH Sbjct: 26 HAKQRKDSFIQFFAMTGILLLSMRSLSQKYKIHGLQEDIHALRVDHGSLTDRINNIKNDLLREASQDSTGLFASRLRHLFAEQH 109
BLAST of Ca_04852 vs. TrEMBL
Match: I1K7F3_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 2.462e-28 Identity = 65/84 (77.38%), Postives = 70/84 (83.33%), Query Frame = 1 Query: 73 HAMKRKDSFIQFFAMTGILLLSMRSLGQKYKIHGLEEDTHALREEHGSLTDRMKNIKRALLHEASQDSTGILASRLRSIFNEQH 324 HA +RKDSFIQFFAMTGILLLSMRSL QKYKIHGL+ED HALR EH SLTDR+ NIK LL EAS D TG+ ASRLR +F EQH Sbjct: 26 HAKQRKDSFIQFFAMTGILLLSMRSLSQKYKIHGLQEDIHALRVEHDSLTDRINNIKNDLLREASHDPTGLFASRLRHLFAEQH 109
BLAST of Ca_04852 vs. TrEMBL
Match: C6T281_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 2.462e-28 Identity = 65/84 (77.38%), Postives = 70/84 (83.33%), Query Frame = 1 Query: 73 HAMKRKDSFIQFFAMTGILLLSMRSLGQKYKIHGLEEDTHALREEHGSLTDRMKNIKRALLHEASQDSTGILASRLRSIFNEQH 324 HA +RKDSFIQFFAMTGILLLSMRSL QKYKIHGL+ED HALR EH SLTDR+ NIK LL EAS D TG+ ASRLR +F EQH Sbjct: 3 HAKQRKDSFIQFFAMTGILLLSMRSLSQKYKIHGLQEDIHALRVEHDSLTDRINNIKNDLLREASHDPTGLFASRLRHLFAEQH 86
BLAST of Ca_04852 vs. TrEMBL
Match: A9PEW8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_550806 PE=4 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 2.722e-27 Identity = 63/84 (75.00%), Postives = 73/84 (86.90%), Query Frame = 1 Query: 73 HAMKRKDSFIQFFAMTGILLLSMRSLGQKYKIHGLEEDTHALREEHGSLTDRMKNIKRALLHEASQDSTGILASRLRSIFNEQH 324 +AMKRKDSFIQ FAMTGI LLS+RSLGQKY+IH L+EDT AL+EE +LTDRMKNIKR+LLHEAS DS+G+ ASRLR +F E H Sbjct: 23 NAMKRKDSFIQLFAMTGIFLLSIRSLGQKYQIHDLQEDTIALKEEQKNLTDRMKNIKRSLLHEASLDSSGLFASRLRLLFGEDH 106
BLAST of Ca_04852 vs. TrEMBL
Match: B9R8I8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1600160 PE=4 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.951e-25 Identity = 59/84 (70.24%), Postives = 72/84 (85.71%), Query Frame = 1 Query: 73 HAMKRKDSFIQFFAMTGILLLSMRSLGQKYKIHGLEEDTHALREEHGSLTDRMKNIKRALLHEASQDSTGILASRLRSIFNEQH 324 +AMKRKDSFIQFFAMTGILLLS+RSLGQKY+IH LEED AL+EE +LT R+ NIK+ LLHEAS D+TG+ ASRLR +F +++ Sbjct: 25 NAMKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLEEDMSALKEEQQTLTTRLSNIKQGLLHEASLDTTGLFASRLRHLFGDEN 108
BLAST of Ca_04852 vs. TrEMBL
Match: M5XU84_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014827mg PE=4 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 5.675e-25 Identity = 59/82 (71.95%), Postives = 70/82 (85.37%), Query Frame = 1 Query: 76 AMKRKDSFIQFFAMTGILLLSMRSLGQKYKIHGLEEDTHALREEHGSLTDRMKNIKRALLHEASQDSTGILASRLRSIFNEQ 321 AMKRKDS+IQFFAMTGILLLS+RSLGQKY++H L EDT AL+EE +LT+RM NIKR LLHEAS + TG+ ASRLR +F E+ Sbjct: 24 AMKRKDSYIQFFAMTGILLLSVRSLGQKYRLHDLHEDTSALKEEQEALTNRMNNIKRDLLHEASLEPTGLFASRLRLLFGER 105
BLAST of Ca_04852 vs. TrEMBL
Match: F6H0C7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g00460 PE=2 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 3.114e-23 Identity = 55/82 (67.07%), Postives = 70/82 (85.37%), Query Frame = 1 Query: 73 HAMKRKDSFIQFFAMTGILLLSMRSLGQKYKIHGLEEDTHALREEHGSLTDRMKNIKRALLHEASQDSTGILASRLRSIFNE 318 +A+KRKDSFIQFFAM+GI LLS+RSLGQKY+++ L+EDT +L+EE L DRM +IKR+LLHEAS DSTG+ ASRLR +F + Sbjct: 27 NALKRKDSFIQFFAMSGIFLLSLRSLGQKYRLNDLQEDTASLKEEQKGLHDRMNHIKRSLLHEASLDSTGLFASRLRLLFGD 108
BLAST of Ca_04852 vs. TrEMBL
Match: A5C535_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013558 PE=2 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 3.114e-23 Identity = 55/82 (67.07%), Postives = 70/82 (85.37%), Query Frame = 1 Query: 73 HAMKRKDSFIQFFAMTGILLLSMRSLGQKYKIHGLEEDTHALREEHGSLTDRMKNIKRALLHEASQDSTGILASRLRSIFNE 318 +A+KRKDSFIQFFAM+GI LLS+RSLGQKY+++ L+EDT +L+EE L DRM +IKR+LLHEAS DSTG+ ASRLR +F + Sbjct: 28 NALKRKDSFIQFFAMSGIFLLSLRSLGQKYRLNDLQEDTASLKEEQKGLHDRMNHIKRSLLHEASLDSTGLFASRLRLLFGD 109
BLAST of Ca_04852 vs. TrEMBL
Match: M1AM38_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400009966 PE=4 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 2.232e-21 Identity = 53/83 (63.86%), Postives = 66/83 (79.52%), Query Frame = 1 Query: 73 HAMKRKDSFIQFFAMTGILLLSMRSLGQKYKIHGLEEDTHALREEHGSLTDRMKNIKRALLHEASQDSTGILASRLRSIFNEQ 321 +AMKRKDSF+QFFAMTGILLLS+RSLGQKY+I+ LEED AL+EE L RM NIK++LL EA+ + TG SRLR +F ++ Sbjct: 28 NAMKRKDSFLQFFAMTGILLLSVRSLGQKYRINNLEEDNAALKEEQEGLVHRMNNIKQSLLAEAASEPTGAFVSRLRRLFGDE 110
BLAST of Ca_04852 vs. TrEMBL
Match: K4DH20_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc12g094480.1 PE=4 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 3.807e-21 Identity = 54/82 (65.85%), Postives = 65/82 (79.27%), Query Frame = 1 Query: 73 HAMKRKDSFIQFFAMTGILLLSMRSLGQKYKIHGLEEDTHALREEHGSLTDRMKNIKRALLHEASQDSTGILASRLRSIFNE 318 +AMKRKDSFIQFFAMTGILLLS+RSLGQKY+IH L ED AL EE L RM +I+++LL EA+ + TG+ ASRLR +F E Sbjct: 28 NAMKRKDSFIQFFAMTGILLLSLRSLGQKYRIHNLMEDNAALEEEQQGLVRRMDHIRQSLLAEAAAEPTGLFASRLRRLFGE 109 The following BLAST results are available for this feature:
BLAST of Ca_04852 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL) Total hits: 25
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BLAST of Ca_04852 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
Sequences
The
following sequences are available for this feature:
mRNA sequence >Ca_04852_v1.0_kabuli ID=Ca_04852_v1.0_kabuli; Name=Ca_04852; organism=Cicer arietinum; type=mRNA; length=327bpback to top protein sequence of Ca_04852_v1.0_kabuli >Ca_04852_v1.0_kabuli ID=Ca_04852_v1.0_kabuli; Name=Ca_04852_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=108bpback to top mRNA from alignment at Ca5:31497634..31497960+ Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.>Ca_04852_v1.0_kabuli ID=Ca_04852_v1.0_kabuli; Name=Ca_04852; organism=Cicer arietinum; type=mRNA; length=327bp; location=Sequence derived from: Ca5:31497634..31497960+ (Cicer arietinumback to top Coding sequence (CDS) from alignment at Ca5:31497634..31497960+ >Ca_04852_v1.0_kabuli ID=Ca_04852_v1.0_kabuli; Name=Ca_04852; organism=Cicer arietinum; type=CDS; length=327bp; location=Sequence derived from: Ca5:31497634..31497960+ (Cicer arietinumback to top |