Ca_04852, Ca_04852_v1.0_kabuli (mRNA) Cicer arietinum

Transcript Overview
NameCa_04852
Unique NameCa_04852_v1.0_kabuli
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length327
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca5chromosomeCa5:31497634..31497960 +Cicer arietinum CDC Frontier genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum CDC Frontier genome v1.02013-01-01
InterProScan analysis for kabuli C. arietinum unigenes2013-10-24
Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL2013-10-24
BLAST: C. arietinum CDC Frontier (kabuli), Swissprot2019-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
capsR381Pisum sativum Cameor genome v1aPisum sativum
capsR384Pisum sativum Cameor genome v1aPisum sativum
capsR394Pisum sativum Cameor genome v1aPisum sativum
cavuR407Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
cavuR444Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
capvR423Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
capvR454Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
capvR513Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caccR0709Cajanus cajan Asha genome v1.0Cajanus cajan
ancaL0292Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0339Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0392Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0479Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0763Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL1063Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL1138Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaL041Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaL201Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaL749Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cazwsR353Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
catifR364Vicia faba cv. Tiffany genome v1.0Vicia faba
catifR395Vicia faba cv. Tiffany genome v1.0Vicia faba
catifR401Vicia faba cv. Tiffany genome v1.0Vicia faba
cavfhR368Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavfhR395Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavfhR403Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavfhR433Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavrvR419Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavrvR432Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavrvR472Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavssR408Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavssR438Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavuaR399Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cavuaR413Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cacanR189Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cacarR393Cicer arietinum
cacarR427Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
rna-TanjilR_12336Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Phvul.009G021100.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
jg56009.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vfaba.Hedin2.R1.2g209640.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vfaba.Tiffany.R1.2g169480.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Psat5g010840.1Pisum sativum Cameor genome v1aPisum sativum
evm.model.Chr09.1200Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigun09g258300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Psat05G0034100-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
LR48_mrnaVigan09g036300Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-TanjilR_29409Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-KK1_019411Cajanus cajan Asha genome v1.0Cajanus cajan
rna-XM_014646377.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-XM_004500840.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_04852-CDS1Ca_04852-CDS1Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_04852_v1.0_kabuliCa_04852_v1.0_kabuliCicer arietinumpolypeptide


Homology
BLAST of Ca_04852 vs. TrEMBL
Match: C6T0E1_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 5.859e-30
Identity = 67/84 (79.76%), Postives = 73/84 (86.90%), Query Frame = 1
Query:   73 HAMKRKDSFIQFFAMTGILLLSMRSLGQKYKIHGLEEDTHALREEHGSLTDRMKNIKRALLHEASQDSTGILASRLRSIFNEQH 324
            HA +RKDSFIQFFAMTGILLLSMRSL QKYKIHGL+ED HALR +HGSLTDR+ NIK  LL EASQDSTG+ ASRLR +F EQH
Sbjct:   26 HAKQRKDSFIQFFAMTGILLLSMRSLSQKYKIHGLQEDIHALRVDHGSLTDRINNIKNDLLREASQDSTGLFASRLRHLFAEQH 109          
BLAST of Ca_04852 vs. TrEMBL
Match: I1K7F3_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 2.462e-28
Identity = 65/84 (77.38%), Postives = 70/84 (83.33%), Query Frame = 1
Query:   73 HAMKRKDSFIQFFAMTGILLLSMRSLGQKYKIHGLEEDTHALREEHGSLTDRMKNIKRALLHEASQDSTGILASRLRSIFNEQH 324
            HA +RKDSFIQFFAMTGILLLSMRSL QKYKIHGL+ED HALR EH SLTDR+ NIK  LL EAS D TG+ ASRLR +F EQH
Sbjct:   26 HAKQRKDSFIQFFAMTGILLLSMRSLSQKYKIHGLQEDIHALRVEHDSLTDRINNIKNDLLREASHDPTGLFASRLRHLFAEQH 109          
BLAST of Ca_04852 vs. TrEMBL
Match: C6T281_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 2.462e-28
Identity = 65/84 (77.38%), Postives = 70/84 (83.33%), Query Frame = 1
Query:   73 HAMKRKDSFIQFFAMTGILLLSMRSLGQKYKIHGLEEDTHALREEHGSLTDRMKNIKRALLHEASQDSTGILASRLRSIFNEQH 324
            HA +RKDSFIQFFAMTGILLLSMRSL QKYKIHGL+ED HALR EH SLTDR+ NIK  LL EAS D TG+ ASRLR +F EQH
Sbjct:    3 HAKQRKDSFIQFFAMTGILLLSMRSLSQKYKIHGLQEDIHALRVEHDSLTDRINNIKNDLLREASHDPTGLFASRLRHLFAEQH 86          
BLAST of Ca_04852 vs. TrEMBL
Match: A9PEW8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_550806 PE=4 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.722e-27
Identity = 63/84 (75.00%), Postives = 73/84 (86.90%), Query Frame = 1
Query:   73 HAMKRKDSFIQFFAMTGILLLSMRSLGQKYKIHGLEEDTHALREEHGSLTDRMKNIKRALLHEASQDSTGILASRLRSIFNEQH 324
            +AMKRKDSFIQ FAMTGI LLS+RSLGQKY+IH L+EDT AL+EE  +LTDRMKNIKR+LLHEAS DS+G+ ASRLR +F E H
Sbjct:   23 NAMKRKDSFIQLFAMTGIFLLSIRSLGQKYQIHDLQEDTIALKEEQKNLTDRMKNIKRSLLHEASLDSSGLFASRLRLLFGEDH 106          
BLAST of Ca_04852 vs. TrEMBL
Match: B9R8I8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1600160 PE=4 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.951e-25
Identity = 59/84 (70.24%), Postives = 72/84 (85.71%), Query Frame = 1
Query:   73 HAMKRKDSFIQFFAMTGILLLSMRSLGQKYKIHGLEEDTHALREEHGSLTDRMKNIKRALLHEASQDSTGILASRLRSIFNEQH 324
            +AMKRKDSFIQFFAMTGILLLS+RSLGQKY+IH LEED  AL+EE  +LT R+ NIK+ LLHEAS D+TG+ ASRLR +F +++
Sbjct:   25 NAMKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLEEDMSALKEEQQTLTTRLSNIKQGLLHEASLDTTGLFASRLRHLFGDEN 108          
BLAST of Ca_04852 vs. TrEMBL
Match: M5XU84_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014827mg PE=4 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 5.675e-25
Identity = 59/82 (71.95%), Postives = 70/82 (85.37%), Query Frame = 1
Query:   76 AMKRKDSFIQFFAMTGILLLSMRSLGQKYKIHGLEEDTHALREEHGSLTDRMKNIKRALLHEASQDSTGILASRLRSIFNEQ 321
            AMKRKDS+IQFFAMTGILLLS+RSLGQKY++H L EDT AL+EE  +LT+RM NIKR LLHEAS + TG+ ASRLR +F E+
Sbjct:   24 AMKRKDSYIQFFAMTGILLLSVRSLGQKYRLHDLHEDTSALKEEQEALTNRMNNIKRDLLHEASLEPTGLFASRLRLLFGER 105          
BLAST of Ca_04852 vs. TrEMBL
Match: F6H0C7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g00460 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 3.114e-23
Identity = 55/82 (67.07%), Postives = 70/82 (85.37%), Query Frame = 1
Query:   73 HAMKRKDSFIQFFAMTGILLLSMRSLGQKYKIHGLEEDTHALREEHGSLTDRMKNIKRALLHEASQDSTGILASRLRSIFNE 318
            +A+KRKDSFIQFFAM+GI LLS+RSLGQKY+++ L+EDT +L+EE   L DRM +IKR+LLHEAS DSTG+ ASRLR +F +
Sbjct:   27 NALKRKDSFIQFFAMSGIFLLSLRSLGQKYRLNDLQEDTASLKEEQKGLHDRMNHIKRSLLHEASLDSTGLFASRLRLLFGD 108          
BLAST of Ca_04852 vs. TrEMBL
Match: A5C535_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013558 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 3.114e-23
Identity = 55/82 (67.07%), Postives = 70/82 (85.37%), Query Frame = 1
Query:   73 HAMKRKDSFIQFFAMTGILLLSMRSLGQKYKIHGLEEDTHALREEHGSLTDRMKNIKRALLHEASQDSTGILASRLRSIFNE 318
            +A+KRKDSFIQFFAM+GI LLS+RSLGQKY+++ L+EDT +L+EE   L DRM +IKR+LLHEAS DSTG+ ASRLR +F +
Sbjct:   28 NALKRKDSFIQFFAMSGIFLLSLRSLGQKYRLNDLQEDTASLKEEQKGLHDRMNHIKRSLLHEASLDSTGLFASRLRLLFGD 109          
BLAST of Ca_04852 vs. TrEMBL
Match: M1AM38_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400009966 PE=4 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.232e-21
Identity = 53/83 (63.86%), Postives = 66/83 (79.52%), Query Frame = 1
Query:   73 HAMKRKDSFIQFFAMTGILLLSMRSLGQKYKIHGLEEDTHALREEHGSLTDRMKNIKRALLHEASQDSTGILASRLRSIFNEQ 321
            +AMKRKDSF+QFFAMTGILLLS+RSLGQKY+I+ LEED  AL+EE   L  RM NIK++LL EA+ + TG   SRLR +F ++
Sbjct:   28 NAMKRKDSFLQFFAMTGILLLSVRSLGQKYRINNLEEDNAALKEEQEGLVHRMNNIKQSLLAEAASEPTGAFVSRLRRLFGDE 110          
BLAST of Ca_04852 vs. TrEMBL
Match: K4DH20_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc12g094480.1 PE=4 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 3.807e-21
Identity = 54/82 (65.85%), Postives = 65/82 (79.27%), Query Frame = 1
Query:   73 HAMKRKDSFIQFFAMTGILLLSMRSLGQKYKIHGLEEDTHALREEHGSLTDRMKNIKRALLHEASQDSTGILASRLRSIFNE 318
            +AMKRKDSFIQFFAMTGILLLS+RSLGQKY+IH L ED  AL EE   L  RM +I+++LL EA+ + TG+ ASRLR +F E
Sbjct:   28 NAMKRKDSFIQFFAMTGILLLSLRSLGQKYRIHNLMEDNAALEEEQQGLVRRMDHIRQSLLAEAAAEPTGLFASRLRRLFGE 109          
The following BLAST results are available for this feature:
BLAST of Ca_04852 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
C6T0E1_SOYBN5.859e-3079.76Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
I1K7F3_SOYBN2.462e-2877.38Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
C6T281_SOYBN2.462e-2877.38Putative uncharacterized protein OS=Glycine max PE... [more]
A9PEW8_POPTR2.722e-2775.00Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9R8I8_RICCO1.951e-2570.24Putative uncharacterized protein OS=Ricinus commun... [more]
M5XU84_PRUPE5.675e-2571.95Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
F6H0C7_VITVI3.114e-2367.07Putative uncharacterized protein OS=Vitis vinifera... [more]
A5C535_VITVI3.114e-2367.07Putative uncharacterized protein OS=Vitis vinifera... [more]
M1AM38_SOLTU2.232e-2163.86Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
K4DH20_SOLLC3.807e-2165.85Uncharacterized protein OS=Solanum lycopersicum GN... [more]

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BLAST of Ca_04852 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 2..24
score
NoneNo IPR availableSEGsegsegcoord: 9..21
score
NoneNo IPR availableSEGsegsegcoord: 17..27
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_04852_v1.0_kabuli ID=Ca_04852_v1.0_kabuli; Name=Ca_04852; organism=Cicer arietinum; type=mRNA; length=327bp
ATGTCTTCCTCCTCAACTCGATCTACCGCCGCCGGTGCCGGCGATGCGAA
GAAGAAGTTAGGGTTTTTGGCGCACGCGATGAAACGAAAGGACAGCTTCA
TTCAATTTTTCGCTATGACTGGAATTCTTCTCTTAAGCATGAGATCCTTG
GGACAAAAGTACAAAATCCATGGACTTGAAGAAGATACACATGCTCTAAG
GGAAGAACACGGTTCACTCACCGACCGTATGAAAAACATTAAACGCGCAT
TGCTTCATGAAGCTTCTCAAGATTCTACTGGAATCTTAGCTTCTCGCCTT
CGTAGTATCTTCAATGAACAACATTGA
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protein sequence of Ca_04852_v1.0_kabuli

>Ca_04852_v1.0_kabuli ID=Ca_04852_v1.0_kabuli; Name=Ca_04852_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=108bp
MSSSSTRSTAAGAGDAKKKLGFLAHAMKRKDSFIQFFAMTGILLLSMRSL
GQKYKIHGLEEDTHALREEHGSLTDRMKNIKRALLHEASQDSTGILASRL
RSIFNEQH
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mRNA from alignment at Ca5:31497634..31497960+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_04852_v1.0_kabuli ID=Ca_04852_v1.0_kabuli; Name=Ca_04852; organism=Cicer arietinum; type=mRNA; length=327bp; location=Sequence derived from: Ca5:31497634..31497960+ (Cicer arietinum
ATGTCTTCCTCCTCAACTCGATCTACCGCCGCCGGTGCCGGCGATGCGAA GAAGAAGTTAGGGTTTTTGGCGCACGCGATGAAACGAAAGGACAGCTTCA TTCAATTTTTCGCTATGACTGGAATTCTTCTCTTAAGCATGAGATCCTTG GGACAAAAGTACAAAATCCATGGACTTGAAGAAGATACACATGCTCTAAG GGAAGAACACGGTTCACTCACCGACCGTATGAAAAACATTAAACGCGCAT TGCTTCATGAAGCTTCTCAAGATTCTACTGGAATCTTAGCTTCTCGCCTT CGTAGTATCTTCAATGAACAACATTGA
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Coding sequence (CDS) from alignment at Ca5:31497634..31497960+

>Ca_04852_v1.0_kabuli ID=Ca_04852_v1.0_kabuli; Name=Ca_04852; organism=Cicer arietinum; type=CDS; length=327bp; location=Sequence derived from: Ca5:31497634..31497960+ (Cicer arietinum
ATGTCTTCCTCCTCAACTCGATCTACCGCCGCCGGTGCCGGCGATGCGAA
GAAGAAGTTAGGGTTTTTGGCGCACGCGATGAAACGAAAGGACAGCTTCA
TTCAATTTTTCGCTATGACTGGAATTCTTCTCTTAAGCATGAGATCCTTG
GGACAAAAGTACAAAATCCATGGACTTGAAGAAGATACACATGCTCTAAG
GGAAGAACACGGTTCACTCACCGACCGTATGAAAAACATTAAACGCGCAT
TGCTTCATGAAGCTTCTCAAGATTCTACTGGAATCTTAGCTTCTCGCCTT
CGTAGTATCTTCAATGAACAACATTGA
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