Ca_05004, Ca_05004_v1.0_kabuli (mRNA) Cicer arietinum
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Ca_05004 vs. SwissProt
Match: EPFL2_ARATH (EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana GN=EPFL2 PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 2.097e-19 Identity = 54/125 (43.20%), Postives = 73/125 (58.40%), Query Frame = 1 Query: 49 ILCLILFASTSFFPHLVFMAEGRAISNVNQVAKKGMEENGSMLVEKFQIGSRPPKCER-RCIKCGHCEAVQVPIVPSKVQIHR----SHYSEATLITYSSTRGDGLSNYKPISWKCKCGDYFFNP 408 +L L++ ST H MA GR + + K G ++ M+ + IGSRPP+CER RC CGHCEA+QVP P + ++H S S + I TRGD +NYKP+SWKCKCG+ +NP Sbjct: 11 LLILLILNST----HFSLMANGRPEPDSVEFTKSGDQDVKMMM--RGLIGSRPPRCERVRCRSCGHCEAIQVPTNP-QTKLHSPLTTSSSSSSETIHLDYTRGDDSTNYKPMSWKCKCGNSIYNP 128
BLAST of Ca_05004 vs. SwissProt
Match: EPFL1_ARATH (EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana GN=EPFL1 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 5.530e-12 Identity = 33/99 (33.33%), Postives = 53/99 (53.54%), Query Frame = 1 Query: 121 ISNVNQVAKKGMEENGSMLVEKFQIGSRPPKCERRCIKCGHCEAVQVPIVPSKVQIHRSHYSEATLITYSS---TRGDGLSNYKPISWKCKCGDYFFNP 408 +S+ Q + + +++ +K ++GS PP C RC C C A+QVP +P++ + R + + S T D SNYKP+ WKC C +F+NP Sbjct: 24 VSSFLQPIQPPISPQVALIEDKARLGSTPPSCHNRCNNCHPCMAIQVPTLPTRSRFTRVNPFSGGFVRPPSSLTTVLDQYSNYKPMGWKCHCNGHFYNP 122
BLAST of Ca_05004 vs. TrEMBL
Match: G7J405_MEDTR (EPIDERMAL PATTERNING FACTOR-like protein OS=Medicago truncatula GN=MTR_3g110550 PE=4 SV=1) HSP 1 Score: 204.912 bits (520), Expect = 7.694e-51 Identity = 105/139 (75.54%), Postives = 112/139 (80.58%), Query Frame = 1 Query: 1 MSRT-QMYLCCHKCRQI--ILCLILFASTSFFPHLVFMAEGRAISNVNQVAKKGMEENGSMLVEKFQIGSRPPKCERRCIKCGHCEAVQVPIVPSKVQIHRSHYSEATLITYSSTRGDGLSNYKPISWKCKCGDYFFNP 408 MSRT +M L CHK QI I+C+ILFASTS +FMAEGR ISN+N+VAK GMEENGSML EK QIGSRPPKCERRC C HCEAVQVPIVPSKVQIHRSHY A S+RGDGLSNYKPISWKCKCGDYFFNP Sbjct: 1 MSRTSKMSLSCHKYTQIFIIICIILFASTS-----IFMAEGRPISNLNEVAKNGMEENGSMLAEKLQIGSRPPKCERRCRSCVHCEAVQVPIVPSKVQIHRSHYDSAAY----SSRGDGLSNYKPISWKCKCGDYFFNP 130
BLAST of Ca_05004 vs. TrEMBL
Match: K7KIZ5_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 1.010e-34 Identity = 82/140 (58.57%), Postives = 101/140 (72.14%), Query Frame = 1 Query: 1 MSRTQMYLCCHKCRQI-ILCLILFASTSFFPHLVFMAEGRAISNVNQVAKKGMEENGSMLVEKFQIGSRPPKCERRCIKCGHCEAVQVPIVPSKVQIHRSHYSEA---TLITYSSTRGDGLSNYKPISWKCKCGDYFFNP 408 MS TQ+ + CHK RQI +CLILFA +VF A+GRAIS+ +VA+ E++ ++V K +IGSRPPKCE+RC CGHCEAVQVP+ P ++Q HR HYS A +TYSS R D LSNYKP+SWKCKCGDY FNP Sbjct: 1 MSITQVCVSCHKYRQITFICLILFA-------IVFTAQGRAISSFIEVAQ---EKDMRIMVAKPRIGSRPPKCEKRCNTCGHCEAVQVPVAP-QIQTHRRHYSSARATKAVTYSS-RDDHLSNYKPMSWKCKCGDYLFNP 128
BLAST of Ca_05004 vs. TrEMBL
Match: I1K9I6_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 8.546e-34 Identity = 81/141 (57.45%), Postives = 95/141 (67.38%), Query Frame = 1 Query: 1 MSRTQMYLCCHKCRQI-ILCLILFASTSFFPHLVFMAEGRAISNVNQVAKKGMEENGSMLVEKFQIGSRPPKCERRCIKCGHCEAVQVPIVPSKVQIH-RSHYSE---ATLITYSSTRGDGLSNYKPISWKCKCGDYFFNP 408 M TQ+ + CHK RQI +CLILFA +VF +GR IS+ +VA K M ++V K +IGSRPPKCE+RC CGHCEAVQVP+VP Q H R HYS +TYSS RGD LSNYKP+SWKCKCGDY FNP Sbjct: 1 MGITQVCVSCHKYRQITFICLILFA-------IVFTTQGRTISSFVEVAPKEMR----IMVAKPRIGSRPPKCEKRCSSCGHCEAVQVPVVPQIFQTHRRRHYSSERATKAVTYSS-RGDDLSNYKPMSWKCKCGDYLFNP 129
BLAST of Ca_05004 vs. TrEMBL
Match: A5AE93_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001850 PE=4 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 1.012e-26 Identity = 67/126 (53.17%), Postives = 86/126 (68.25%), Query Frame = 1 Query: 40 RQIILCLILFASTSFFPHLVFMAEGRAISN-VNQVAK--KGMEENGSMLVEKFQIGSRPPKCERRCIKCGHCEAVQVPIVPSKVQIHRSHYSEATLITYSSTRGDGLSNYKPISWKCKCGDYFFNP 408 RQ+I+ L++ +++F FMAEGR +S V VA+ KG EE M+V + QIGSRPP+C+RRC CGHCEAVQVPIVP SH+ A + YS RGD +SNYKP++WKCKCG+ FNP Sbjct: 415 RQLIISLLILLASNFTQER-FMAEGRLVSKLVGXVAQTYKGREE---MVVMRNQIGSRPPRCQRRCSSCGHCEAVQVPIVPQLHSHRTSHFYAAPTVEYS--RGDYISNYKPMTWKCKCGNAIFNP 534
BLAST of Ca_05004 vs. TrEMBL
Match: B9R6S9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1584940 PE=4 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 1.368e-23 Identity = 59/136 (43.38%), Postives = 78/136 (57.35%), Query Frame = 1 Query: 1 MSRTQMYLCCHKCRQIILCLILFASTSFFPHLVFMAEGRAISNVNQVAKKGMEENGSMLVEKFQIGSRPPKCERRCIKCGHCEAVQVPIVPSKVQIHRSHYSEATLITYSSTRGDGLSNYKPISWKCKCGDYFFNP 408 M Q C++ R + + L LF S + F+AEGRAI + + E + M V IGS PP+C+RRC CGHCEAVQVP+ V RS + + + +RGDG+SNYKP+SWKCKCG+ FNP Sbjct: 1 MGSAQFCYFCNRNRHLTISL-LFLLLSCSTLVRFVAEGRAIPKPLESETQKEEMDEKMAVRSRVIGSTPPRCDRRCNSCGHCEAVQVPVTTRIVSHKRSAHLSTAISNIAYSRGDGISNYKPMSWKCKCGNLIFNP 135
BLAST of Ca_05004 vs. TrEMBL
Match: B9T176_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0338850 PE=4 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 1.280e-21 Identity = 55/130 (42.31%), Postives = 75/130 (57.69%), Query Frame = 1 Query: 19 YLCCHKCRQIILCLILFASTSFFPHLVFMAEGRAISNVNQVAKKGMEENGSMLVEKFQIGSRPPKCERRCIKCGHCEAVQVPIVPSKVQIHRSHYSEATLITYSSTRGDGLSNYKPISWKCKCGDYFFNP 408 +L C + + + +F S + F AEGRA ++ EE ++ + QIGSRPP+CE+RC CGHCEA+QVP P ++ +YS +T + RGD SNYKP+SWKCKCGD FNP Sbjct: 11 FLLCQRLGYVTISF-MFLLISSSTQVRFKAEGRATPKSASFSQTVNEEK---MLMRSQIGSRPPRCEKRCSTCGHCEAIQVPTNP-QINHGNRNYSSSTFSNVAYARGDDASNYKPMSWKCKCGDLIFNP 135
BLAST of Ca_05004 vs. TrEMBL
Match: A5AQ12_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037684 PE=4 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 1.672e-21 Identity = 57/121 (47.11%), Postives = 80/121 (66.12%), Query Frame = 1 Query: 49 ILCLILFASTSFFPHLVFMAEGRAISNVNQVAKKGMEENGSMLVEKFQIGSRPPKCERRCIKCGHCEAVQVPIVPSKVQIHRSHYSEATLI-TYSSTRGDGLSNYKPISWKCKCGDYFFNP 408 +L L++ +ST L FMAEGRA+ + + E +++ + QIGSRPPKCERRC CGHCEA+QVP P Q+ + + +T++ T + +RGD SNYKP+SWKCKCG++ FNP Sbjct: 20 LLFLLILSSTQ----LKFMAEGRAVLFKPVGFSQPVSEEKAIV--RAQIGSRPPKCERRCNSCGHCEAIQVPANP---QVKTPNTNSSTVVGTIAYSRGDDNSNYKPMSWKCKCGNFVFNP 131
BLAST of Ca_05004 vs. TrEMBL
Match: E0CNW2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g08350 PE=4 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 2.183e-21 Identity = 48/79 (60.76%), Postives = 58/79 (73.42%), Query Frame = 1 Query: 172 MLVEKFQIGSRPPKCERRCIKCGHCEAVQVPIVPSKVQIHRSHYSEATLITYSSTRGDGLSNYKPISWKCKCGDYFFNP 408 M+V + QIGSRPP+C+RRC CGHCEAVQVPIVP SH+ A + YS RGD +SNYKP++WKCKCG+ FNP Sbjct: 1 MVVMRNQIGSRPPRCQRRCSSCGHCEAVQVPIVPQLHSHRTSHFYAAPTVEYS--RGDYISNYKPMTWKCKCGNAIFNP 77
BLAST of Ca_05004 vs. TrEMBL
Match: M5XQI3_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa026285mg PE=4 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 8.297e-21 Identity = 62/143 (43.36%), Postives = 75/143 (52.45%), Query Frame = 1 Query: 10 TQMYLCCHKCRQIILCLILFASTSFFPHLVFMAEGRAISNVNQVAKKGMEENGSMLVEKFQIGSRPPKCERRCIKCGHCEAVQVPIVPSKVQIHRSHYSEATL----------ITYSSTRGDGLSNYKPISWKCKCGDYFFNP 408 TQ C H+ R +I+ + L +S HL FMAE + N Q IGSRPP+CE RC CGHC AVQVP+ P +VQ H S +L + YS RGD ++NYKPISWKCKCGD FNP Sbjct: 1 TQNCACWHRNRHLIISIFLLLVSSS-THLRFMAEAGVVVNARQ------------------IGSRPPRCESRCSACGHCVAVQVPVSP-QVQGHSKIRSHGSLPDSTRTSPKNVAYS--RGDDITNYKPISWKCKCGDLLFNP 121
BLAST of Ca_05004 vs. TrEMBL
Match: C8YZB7_CAPAN (UPA25 OS=Capsicum annuum PE=2 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 2.414e-20 Identity = 61/141 (43.26%), Postives = 84/141 (59.57%), Query Frame = 1 Query: 1 MSRTQMYLCCHKCRQIILCLILFASTSFFPHLVFMAEGRAISNVNQ-VAKKGMEENGSMLVEKFQIGSRPPKCERRCIKCGHCEAVQVPIVPS----KVQIHRSHYSEATLITYSSTRGDGLSNYKPISWKCKCGDYFFNP 408 M +Q+ L H+ Q I+ L+L S H+ AEGR I + + ++ EE +L + IGSRPP+CE RC CG CEAVQVPIVP+ + +I + + + YS RGD +SNYKP+ WKCKCG++FFNP Sbjct: 1 MGCSQLLLFWHRNLQTIIFLLLLF-ISGLTHVRLTAEGRRILKLQTGITQRKNEEK--VLKMRSLIGSRPPRCEGRCRNCGPCEAVQVPIVPALKHQQTRISQLNAIPKFFLAYS--RGDDISNYKPMCWKCKCGNFFFNP 136
BLAST of Ca_05004 vs. DB:Swiss
Match: EPFL2_ARATH (EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=EPFL2 PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 3.214e-23 Identity = 51/112 (45.54%), Postives = 65/112 (58.04%), Query Frame = 1 Query: 91 HLVFMAEGRAISNVNQVAKKGMEENGSMLVEKFQIGSRPPKCER-RCIKCGHCEAVQVPIVP-----SKVQIHRSHYSEATLITYSSTRGDGLSNYKPISWKCKCGDYFFNP 408 H MA GR + + K G ++ M+ + IGSRPP+CER RC CGHCEA+QVP P S + S SE + Y TRGD +NYKP+SWKCKCG+ +NP Sbjct: 21 HFSLMANGRPEPDSVEFTKSGDQDVKMMM--RGLIGSRPPRCERVRCRSCGHCEAIQVPTNPQTKLHSPLTTSSSSSSETIHLDY--TRGDDSTNYKPMSWKCKCGNSIYNP 128
BLAST of Ca_05004 vs. DB:Swiss
Match: EPFL1_ARATH (EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EPFL1 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 1.496e-14 Identity = 33/99 (33.33%), Postives = 53/99 (53.54%), Query Frame = 1 Query: 121 ISNVNQVAKKGMEENGSMLVEKFQIGSRPPKCERRCIKCGHCEAVQVPIVPSKVQIHRSHYSEATLITYSS---TRGDGLSNYKPISWKCKCGDYFFNP 408 +S+ Q + + +++ +K ++GS PP C RC C C A+QVP +P++ + R + + S T D SNYKP+ WKC C +F+NP Sbjct: 24 VSSFLQPIQPPISPQVALIEDKARLGSTPPSCHNRCNNCHPCMAIQVPTLPTRSRFTRVNPFSGGFVRPPSSLTTVLDQYSNYKPMGWKCHCNGHFYNP 122 The following BLAST results are available for this feature:
BLAST of Ca_05004 vs. SwissProt
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs Swissprot) Total hits: 2
BLAST of Ca_05004 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL) Total hits: 25
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BLAST of Ca_05004 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot) Total hits: 2
InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
Sequences
The
following sequences are available for this feature:
mRNA sequence >Ca_05004_v1.0_kabuli ID=Ca_05004_v1.0_kabuli; Name=Ca_05004; organism=Cicer arietinum; type=mRNA; length=411bpback to top protein sequence of Ca_05004_v1.0_kabuli >Ca_05004_v1.0_kabuli ID=Ca_05004_v1.0_kabuli; Name=Ca_05004_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=136bpback to top mRNA from alignment at Ca5:33072274..33073064- Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.>Ca_05004_v1.0_kabuli ID=Ca_05004_v1.0_kabuli; Name=Ca_05004; organism=Cicer arietinum; type=mRNA; length=791bp; location=Sequence derived from: Ca5:33072274..33073064- (Cicer arietinumback to top Coding sequence (CDS) from alignment at Ca5:33072274..33073064- >Ca_05004_v1.0_kabuli ID=Ca_05004_v1.0_kabuli; Name=Ca_05004; organism=Cicer arietinum; type=CDS; length=411bp; location=Sequence derived from: Ca5:33072274..33073064- (Cicer arietinumback to top |