Ca_07453, Ca_07453_v1.0_kabuli (mRNA) Cicer arietinum
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Gene/transcripts from the same species that appear to represent the same gene
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Ca_07453 vs. TrEMBL
Match: G7JV00_MEDTR (Transcription factor tau subunit sfc4 OS=Medicago truncatula GN=MTR_4g079390 PE=4 SV=1) HSP 1 Score: 196.438 bits (498), Expect = 6.661e-48 Identity = 115/255 (45.10%), Postives = 142/255 (55.69%), Query Frame = 1 Query: 1 MEVINQNK-EDNPMAEEGNDNAIDHNEDTCYGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPFEFENGINPLDLIGNSDSGLPCYQTIKD-------YVVLCNKKRKPLEQCHREGTSSKKAREEDIAEVSSAEMTEIELMNFDQCXXXXXXXXXXXXXXXXXXXXLDERLSRMLGDANLHYANRRYDMAITVLHEVVRLKPTLPESYHILGLVHNAIGDYKKGMSFYKIAARLTPKDSSLWKMLFAW 741 MEVINQ + ED+P A E +DNA+D T YG + F F G+NPLD + N+DS + YQ ++D Y L N+KRKP +Q HRE TSSKKARE+DI+ V A++ E ELMN LDE++S+M GDA +HY +RRYDMAI VLHEVVRL+P LP+ YHILG VH AIGD++ M FY I A LTPKDSSLW+ LF W Sbjct: 1 MEVINQKEDEDHPRAIEDSDNAVDTEYGTLYGA---------EENGEEENALENEEEEEGESDTVDEDQFRFCGGVNPLDFVRNNDSSVQLYQKLEDYHQKSIQYRALDNRKRKPPQQPHREETSSKKAREDDISGVGLADIEE-ELMNLGHGKRSKKKRSKKRGRQKGSKKKLDEKISQMFGDALMHYTSRRYDMAIDVLHEVVRLEPNLPDPYHILGAVHGAIGDHENEMGFYMIYAHLTPKDSSLWERLFVW 245
BLAST of Ca_07453 vs. TrEMBL
Match: G7JNI9_MEDTR (Transcription factor tau subunit sfc4 OS=Medicago truncatula GN=MTR_4g074860 PE=4 SV=1) HSP 1 Score: 186.037 bits (471), Expect = 9.002e-45 Identity = 115/255 (45.10%), Postives = 142/255 (55.69%), Query Frame = 1 Query: 1 MEVINQNKE-DNPMAEEGNDNAIDHNEDTCYGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPFEFENGINPLDLIGNSDSGLPCYQTIKDYV-------VLCNKKRKPLEQCHREGTSSKKAREEDIAEVSSAEMTEIELMNFDQCXXXXXXXXXXXXXXXXXXXXLDERLSRMLGDANLHYANRRYDMAITVLHEVVRLKPTLPESYHILGLVHNAIGDYKKGMSFYKIAARLTPKDSSLWKMLFAW 741 ME INQ +E D+P A E +DNA NEDT YGV + F F G+NPLD + N+DSG+ YQ KDY L N+KRK Q HRE TSSKKA E+DI V+ AE+ E +NF + LDE++S+MLGDA++HYAN R+ MAI+VLHEVVRL+P LP+SYH LGLVH AIGD++ M FY I A LTPKD +LWK L+ W Sbjct: 1 MEEINQKEEEDHPRAVEDSDNA---NEDTQYGVEETGEEEEDASENEEEEEEEENDTVDED------DQFIFGAGVNPLDFVRNNDSGVNLYQKFKDYHQKSIEYRALDNRKRKLPLQPHREETSSKKAGEDDIFGVNPAEVEEF--INFGEGKRPRKKRSKKRGRQKGSKKKLDEKISQMLGDAHVHYANGRHKMAISVLHEVVRLEPNLPDSYHTLGLVHGAIGDHENEMGFYMITAHLTPKDPTLWKTLYVW 244
BLAST of Ca_07453 vs. TrEMBL
Match: G7JNI2_MEDTR (Transcription factor tau subunit sfc4 OS=Medicago truncatula GN=MTR_4g074720 PE=4 SV=1) HSP 1 Score: 186.037 bits (471), Expect = 9.002e-45 Identity = 115/255 (45.10%), Postives = 142/255 (55.69%), Query Frame = 1 Query: 1 MEVINQNKE-DNPMAEEGNDNAIDHNEDTCYGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPFEFENGINPLDLIGNSDSGLPCYQTIKDYV-------VLCNKKRKPLEQCHREGTSSKKAREEDIAEVSSAEMTEIELMNFDQCXXXXXXXXXXXXXXXXXXXXLDERLSRMLGDANLHYANRRYDMAITVLHEVVRLKPTLPESYHILGLVHNAIGDYKKGMSFYKIAARLTPKDSSLWKMLFAW 741 ME INQ +E D+P A E +DNA NEDT YGV + F F G+NPLD + N+DSG+ YQ KDY L N+KRK Q HRE TSSKKA E+DI V+ AE+ E +NF + LDE++S+MLGDA++HYAN R+ MAI+VLHEVVRL+P LP+SYH LGLVH AIGD++ M FY I A LTPKD +LWK L+ W Sbjct: 1 MEEINQKEEEDHPRAVEDSDNA---NEDTQYGVEETGEEEEDASENEEEEEEEENDTVDED------DQFIFGAGVNPLDFVRNNDSGVNLYQKFKDYHQKSIEYRALDNRKRKLPLQPHREETSSKKAGEDDIFGVNPAEVEEF--INFGEGKRPRKKRSKKRGRQKGSKKKLDEKISQMLGDAHVHYANGRHKMAISVLHEVVRLEPNLPDSYHTLGLVHGAIGDHENEMGFYMITAHLTPKDPTLWKTLYVW 244
BLAST of Ca_07453 vs. TrEMBL
Match: G7JNH9_MEDTR (General transcription factor 3C polypeptide OS=Medicago truncatula GN=MTR_4g074690 PE=4 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 3.421e-44 Identity = 112/257 (43.58%), Postives = 143/257 (55.64%), Query Frame = 1 Query: 1 MEVINQNKED-NPMAEEGNDNAIDHNEDTCYGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPFEFENGINPLDLIGNSDSGLPCYQTIKDYV-------VLCNKKRKPLEQCHREGTSSKKAREEDIAEVSSAEMTEIELMNFDQCXXXXXXXXXXXXXXXXXXXXLDERLSRMLGDANLHYANRRYDMAITVLHEVVRLKPTLPESYHILGLVHNAIGDYKKGMSFYKIAARLTPKDSSLWKMLFAWYM 747 ME INQ +E+ +P E ++NA N+DT YGV + F F +G+NPLD + N+DS + YQ KDY L N+KRK Q HRE TSSKKARE+D+ V SAE+ E +NF + LDE++S+MLGDA +HYAN R++MAI+VLHEVVRL+P LP+SYH LGLVH AIGD++ M FY I A LTPKD +LWK L+ W M Sbjct: 17 MEEINQKEEEYHPRVTEDSNNA---NDDTRYGVEENGEEEEEASENED-------------------DQFIFGDGVNPLDFVRNNDSDVRLYQKFKDYHQKSIEYRALDNRKRKLPLQSHREETSSKKAREDDVFGVISAEVEEF--INFGEGKRSRKKRSNKRGRQKGSKKELDEKISQMLGDAYIHYANGRHEMAISVLHEVVRLEPNLPDSYHTLGLVHGAIGDHENEMGFYMITAHLTPKDPTLWKTLYVWSM 249
BLAST of Ca_07453 vs. TrEMBL
Match: A5AND8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020389 PE=4 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 1.348e-32 Identity = 83/179 (46.37%), Postives = 107/179 (59.78%), Query Frame = 1 Query: 211 FENGINPLDLIGNSDSGLPCYQTIK--DYVVLCNKKRKPLEQCHREGTSSKKAREEDIAEVSSAEMTEIELMNFDQCXXXXXXXXXXXXXXXXXXXXLDERLSRMLGDANLHYANRRYDMAITVLHEVVRLKPTLPESYHILGLVHNAIGDYKKGMSFYKIAARLTPKDSSLWKMLFAW 741 FE+G+NPLD N SGL Y+ + +Y L KKRK L QC EG + KKAR ED ++ E+ +E MN + L ++R LG+ANLHYA+ RY+ AI VL EVVRL P LP++YH GLV+NA GD K+ ++FY +AA LTPKDSSLWK+L W Sbjct: 37 FEDGMNPLDFTENDASGLQPYEQFERLEYEALAEKKRKALSQCQFEGLA-KKARHEDDSQAIFDEI--METMNHRR--RRKSRKRKKSGRRKGLKNKLSPEVTRKLGEANLHYAHGRYEEAILVLKEVVRLAPNLPDAYHTFGLVYNAFGDKKRALNFYMLAAHLTPKDSSLWKLLVTW 210
BLAST of Ca_07453 vs. TrEMBL
Match: K7LNY4_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 7.399e-31 Identity = 80/182 (43.96%), Postives = 104/182 (57.14%), Query Frame = 1 Query: 205 FEFENGINPLDLIG-NSDSGLPCYQTIK--DYVVLCNKKRKPLEQCHREGTSSKKAREEDIAEVSSAEMTEIELMNFDQCXXXXXXXXXXXXXXXXXXXXLDERLSRMLGDANLHYANRRYDMAITVLHEVVRLKPTLPESYHILGLVHNAIGDYKKGMSFYKIAARLTPKDSSLWKMLFAW 741 F F+NG+NPLD + N DSG+ YQ + L +KKRK +EQCH E SK ARE D++ AE+ +E M++ D +L++MLGDA HYA YD A VL EV+RL P L ESYH LGLV+ ++ DYK+ M+ Y IAA L K+SSLWK +F W Sbjct: 41 FRFKNGMNPLDFVDDNDDSGIQPYQRFVRLEREALADKKRKAIEQCHSEEPPSKMAREGDVSGAKIAEI--MEAMDYYGVRKRSRKPKKRGRRKGSKNKD-DPKLTQMLGDATFHYARGDYDQAKAVLREVIRLAPNLHESYHTLGLVYTSLQDYKRAMALYLIAAHLDAKESSLWKTIFTW 219
BLAST of Ca_07453 vs. TrEMBL
Match: F6H9S2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0085g01060 PE=4 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 1.648e-30 Identity = 80/175 (45.71%), Postives = 103/175 (58.86%), Query Frame = 1 Query: 223 INPLDLIGNSDSGLPCYQTIK--DYVVLCNKKRKPLEQCHREGTSSKKAREEDIAEVSSAEMTEIELMNFDQCXXXXXXXXXXXXXXXXXXXXLDERLSRMLGDANLHYANRRYDMAITVLHEVVRLKPTLPESYHILGLVHNAIGDYKKGMSFYKIAARLTPKDSSLWKMLFAW 741 +NPLD N SGL Y+ + +Y L KKRK L QC EG + KKAR ED ++ E+ +E MN + L ++R LG+ANLHYA+ RY+ AI VL EVVRL P LP++YH GLV+NA GD K+ ++FY +AA LTPKDSSLWK+L W Sbjct: 1 MNPLDFTENDASGLQPYEQFERLEYEALAEKKRKALSQCQFEGLA-KKARHEDDSQAIFDEI--METMNHRR--RRKSRKRKKSGRRKGLKNKLSPEVTRKLGEANLHYAHGRYEEAILVLKEVVRLAPNLPDAYHTFGLVYNAFGDKKRALNFYMLAAHLTPKDSSLWKLLVTW 170
BLAST of Ca_07453 vs. TrEMBL
Match: K7LSR3_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 6.925e-29 Identity = 79/182 (43.41%), Postives = 102/182 (56.04%), Query Frame = 1 Query: 205 FEFENGINPLDLIG-NSDSGLPCYQTIK--DYVVLCNKKRKPLEQCHREGTSSKKAREEDIAEVSSAEMTEIELMNFDQCXXXXXXXXXXXXXXXXXXXXLDERLSRMLGDANLHYANRRYDMAITVLHEVVRLKPTLPESYHILGLVHNAIGDYKKGMSFYKIAARLTPKDSSLWKMLFAW 741 F F+ G+NPLD + N DSG+ YQ + L +KKRK EQCH E SK ARE DI+ AE+ +E M++ +D +L++M GDA HYA YD A VL EV+RL P L ESYH LGLV+ ++ DYK+ M+ Y IAA L PK+S LWK +F W Sbjct: 45 FRFKTGMNPLDFVDDNDDSGIQPYQRFVRLEREALADKKRKAPEQCHSEEPPSKMAREGDISGAKIAEI--MEAMDY-YGMRKRSRKPKKRGRRKGSKNRVDPKLTQMQGDATFHYACGDYDRAKAVLCEVIRLAPNLHESYHTLGLVYTSLQDYKRAMALYLIAAHLDPKESPLWKTIFTW 223
BLAST of Ca_07453 vs. TrEMBL
Match: B9NE90_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_594398 PE=2 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 6.925e-29 Identity = 73/154 (47.40%), Postives = 94/154 (61.04%), Query Frame = 1 Query: 286 DYVVLCNKKRKPLEQCHREGTSSKKAREEDIAEVSSAEMTEIELMNFDQCXXXXXXXXXXXXXXXXXXXXLDERLSRMLGDANLHYANRRYDMAITVLHEVVRLKPTLPESYHILGLVHNAIGDYKKGMSFYKIAARLTPKDSSLWKMLFAWYM 747 +Y L KKRK L EG S+KKAR+ED+ S AE+ EI MNF L ++RMLGDA LHYA+ Y+ A+TVL EVV+ P + +SYH LGLVH A+G+ +K M FY+IAA L PKDSSLWK+LF+W++ Sbjct: 70 EYEALAEKKRKTLADAKGEG-SAKKARQEDMTGASLAEIEEI--MNFGMRKKRRRRMPKRRGRRKGSKNKLSPEITRMLGDATLHYAHGNYEEALTVLSEVVKRAPLVADSYHTLGLVHKALGNTEKAMKFYRIAAFLRPKDSSLWKLLFSWHV 220
BLAST of Ca_07453 vs. TrEMBL
Match: B9N5W7_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_582731 PE=2 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 6.925e-29 Identity = 73/154 (47.40%), Postives = 94/154 (61.04%), Query Frame = 1 Query: 286 DYVVLCNKKRKPLEQCHREGTSSKKAREEDIAEVSSAEMTEIELMNFDQCXXXXXXXXXXXXXXXXXXXXLDERLSRMLGDANLHYANRRYDMAITVLHEVVRLKPTLPESYHILGLVHNAIGDYKKGMSFYKIAARLTPKDSSLWKMLFAWYM 747 +Y L KKRK L EG S+KKAR+ED+ S AE+ EI MNF L ++RMLGDA LHYA+ Y+ A+TVL EVV+ P + +SYH LGLVH A+G+ +K M FY+IAA L PKDSSLWK+LF+W++ Sbjct: 72 EYEALAEKKRKTLADAKGEG-SAKKARQEDMTGASLAEIEEI--MNFGMRKKRRRRMPKRRGRRKGSKNKLSPEITRMLGDATLHYAHGNYEEALTVLSEVVKRAPLVADSYHTLGLVHKALGNTEKAMKFYRIAAFLRPKDSSLWKLLFSWHV 222 The following BLAST results are available for this feature:
BLAST of Ca_07453 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL) Total hits: 25
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BLAST of Ca_07453 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
Sequences
The
following sequences are available for this feature:
mRNA sequence >Ca_07453_v1.0_kabuli ID=Ca_07453_v1.0_kabuli; Name=Ca_07453; organism=Cicer arietinum; type=mRNA; length=750bpback to top protein sequence of Ca_07453_v1.0_kabuli >Ca_07453_v1.0_kabuli ID=Ca_07453_v1.0_kabuli; Name=Ca_07453_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=249bpback to top mRNA from alignment at Ca5:39006099..39008978+ Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.>Ca_07453_v1.0_kabuli ID=Ca_07453_v1.0_kabuli; Name=Ca_07453; organism=Cicer arietinum; type=mRNA; length=2880bp; location=Sequence derived from: Ca5:39006099..39008978+ (Cicer arietinumback to top Coding sequence (CDS) from alignment at Ca5:39006099..39008978+ >Ca_07453_v1.0_kabuli ID=Ca_07453_v1.0_kabuli; Name=Ca_07453; organism=Cicer arietinum; type=CDS; length=750bp; location=Sequence derived from: Ca5:39006099..39008978+ (Cicer arietinumback to top |