Ca_11404, Ca_11404_v1.0_kabuli (mRNA) Cicer arietinum

Transcript Overview
NameCa_11404
Unique NameCa_11404_v1.0_kabuli
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length342
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca5chromosomeCa5:42074109..42075324 +Cicer arietinum CDC Frontier genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
capsR406Pisum sativum Cameor genome v1aPisum sativum
capsR437Pisum sativum Cameor genome v1aPisum sativum
cavuR363Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
capvR426Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caccR0617Cajanus cajan Asha genome v1.0Cajanus cajan
ancaL0029Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0037Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0243Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0340Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0384Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0755Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaL049Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaL054Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cazwsR372Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
cazwsR393Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
catifR378Vicia faba cv. Tiffany genome v1.0Vicia faba
cavfhR379Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
catifR442Vicia faba cv. Tiffany genome v1.0Vicia faba
cavfhR449Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavssR417Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavssR453Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavuaR346Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cacanR189Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cacanR197Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjcaL268Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcaL272Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcaL486Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
cacarR380Cicer arietinum
cacarR404Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
Vfaba.Hedin2.R1.2g107400.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
jg53453.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Psat05G0297500-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Psat5g100360.1Pisum sativum Cameor genome v1aPisum sativum
evm.model.Chr01.2372.1.6211317bVigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Phvul.001G267100.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vfaba.Tiffany.R1.2g088360.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Va03G085990.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vigun01g253300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-KK1_003269Cajanus cajan Asha genome v1.0Cajanus cajan
rna-TanjilR_33028Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-NM_001364840.1Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_11404-CDS1Ca_11404-CDS1Cicer arietinumCDS
Ca_11404-CDS2Ca_11404-CDS2Cicer arietinumCDS
Ca_11404-CDS3Ca_11404-CDS3Cicer arietinumCDS
Ca_11404-CDS4Ca_11404-CDS4Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_11404_v1.0_kabuliCa_11404_v1.0_kabuliCicer arietinumpolypeptide


Homology
[Close]
BLAST of Ca_11404 vs. SwissProt
Match: RBG4_ARATH (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana GN=RBG4 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.247e-31
Identity = 65/100 (65.00%), Postives = 80/100 (80.00%), Query Frame = 1 
Query:    1 MAFCNKIGNILRQGAAQSSPAPVSSMLNYVRFMSQSKLFIGGLSYGVDDQSLRDAFASFGEVVEARVITDRDTGRSRGFGFVNFSSDEQATSALSAMDGQ 300
            MAFCNK+  ILRQG +QSS  PV+SML  +R+MS SKLF+GGLS+G DD SL+ AF SFGEV EA VI DR+TGRSRGFGFV+FS ++ A +A+  MDG+
Sbjct:    1 MAFCNKLSGILRQGVSQSSNGPVTSMLGSLRYMS-SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGK 99
[Close]
BLAST of Ca_11404 vs. SwissProt
Match: RBG2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=RBG2 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.994e-30
Identity = 64/100 (64.00%), Postives = 81/100 (81.00%), Query Frame = 1 
Query:    1 MAFCNKIGNILRQGAAQSSPAPVSSMLNYVRFMSQSKLFIGGLSYGVDDQSLRDAFASFGEVVEARVITDRDTGRSRGFGFVNFSSDEQATSALSAMDGQ 300
            MAFCNK+G +LRQ  + +   PV+SML  +R MS +KLFIGGLS+G DD SLRDAFA FG+VV+A+VI DR+TGRSRGFGFVNF+ +  AT+A+S MDG+
Sbjct:    1 MAFCNKLGGLLRQNISSNGNVPVTSMLGSLRLMS-TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGK 99
[Close]
BLAST of Ca_11404 vs. SwissProt
Match: RBG3_ARATH (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana GN=RBG3 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.479e-25
Identity = 58/105 (55.24%), Postives = 77/105 (73.33%), Query Frame = 1 
Query:    1 MAFCNKIGNILRQGAAQSSPAPVS----SMLNYVRFMSQSKLFIGGLSYGVDDQSLRDAFASFGEVVEARVITDRDTGRSRGFGFVNFSSDEQATSALSAMDGQN 303
            MAF +K GNIL+Q   +   A VS    S+   +R MS SKLFIGG++Y +D+ SLR+AF  +GEVV+ RVI DR+TGRSRGFGFV F+S E A+SA+ A+DG++
Sbjct:    1 MAFLSKFGNILKQTTNKQLNAQVSLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRD 105
[Close]
BLAST of Ca_11404 vs. SwissProt
Match: RT19_ARATH (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 1.252e-24
Identity = 59/100 (59.00%), Postives = 76/100 (76.00%), Query Frame = 1 
Query:    1 MAFCNKIGNILRQGAAQSSPAPVSSMLNYVRFMSQSKLFIGGLSYGVDDQSLRDAFASFGEVVEARVITDRDTGRSRGFGFVNFSSDEQATSALSAMDGQ 300
            MAFC K+G   +QG       PVSSML  +R+MS +KL+IGGLS G D+ SL+DAF+SF  V EARV+T++ TGRSRG+GFVNF S++ A SA+SAM+GQ
Sbjct:    1 MAFCTKLGGHWKQGVN----VPVSSMLGSLRYMS-TKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQ 95
[Close]
BLAST of Ca_11404 vs. SwissProt
Match: RBG5_ARATH (Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis thaliana GN=RBG5 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.409e-22
Identity = 50/101 (49.50%), Postives = 76/101 (75.25%), Query Frame = 1 
Query:    1 MAFCNKIGNILRQGAAQSSPAPVSSMLNYVRFMSQSKLFIGGLSYGVDDQSLRDAFASFGEVVEARVITDRDTGRSRGFGFVNFSSDEQATSALSAMDGQN 303
            MAF +K+G +  Q ++  + +  SSML  +R MS SK+F+GG+SY  D+  LR+AF+ +GEVV+A++I DR+TGRSRGF FV F+S E+A++A+  +DGQ+
Sbjct:    1 MAFLSKVGRLFSQTSSHVTAS--SSMLQSIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQD 98
[Close]
BLAST of Ca_11404 vs. SwissProt
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.313e-17
Identity = 36/65 (55.38%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:  109 KLFIGGLSYGVDDQSLRDAFASFGEVVEARVITDRDTGRSRGFGFVNFSSDEQATSALSAMDGQN 303
            + F+GGL +  DDQSL++AF+ +G+V+++++ITDR+TGRSRGFGFV F+SDE    A+ AM+GQ+
Sbjct:    7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQD 71
[Close]
BLAST of Ca_11404 vs. SwissProt
Match: RBG6_ARATH (Glycine-rich RNA-binding protein 6, mitochondrial OS=Arabidopsis thaliana GN=RBG6 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.272e-15
Identity = 44/101 (43.56%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:    1 MAFCNKIGNILRQGAA-QSSPAPVSSMLNYVRFMSQSKLFIGGLSYGVDDQSLRDAFASFGEVVEARVITDRDTGRSRGFGFVNFSSDEQATSALSAMDGQ 300
            M   ++ GNI RQ  A Q+S A +   L+    ++ SK+F+GGLS   D + L++AF SFG++V+A V+ DR++G SRGFGFV + S E A +A+ AM  +
Sbjct:    4 MGLFSRAGNIFRQPRALQASNAMLQGNLS----LTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAMQNK 100
[Close]
BLAST of Ca_11404 vs. SwissProt
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.174e-14
Identity = 33/64 (51.56%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:  109 KLFIGGLSYGVDDQSLRDAFASFGEVVEARVITDRDTGRSRGFGFVNFSSDEQATSALSAMDGQ 300
            + F+GGL++   ++SL +AFAS+GE+++++VITDR+TGRSRGFGFV FSS+     A+  M+G+
Sbjct:    9 RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGK 72
[Close]
BLAST of Ca_11404 vs. SwissProt
Match: RBM3_MOUSE (Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.534e-14
Identity = 33/67 (49.25%), Postives = 51/67 (76.12%), Query Frame = 1 
Query:  103 QSKLFIGGLSYGVDDQSLRDAFASFGEVVEARVITDRDTGRSRGFGFVNFSSDEQATSALSAMDGQN 303
            + KLF+GGL++  D+Q+L D F+SFG + E  V+ DR+T RSRGFGF+ F++ E A+ A+ AM+G++
Sbjct:    5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGES 71
[Close]
BLAST of Ca_11404 vs. SwissProt
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.534e-14
Identity = 32/64 (50.00%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  109 KLFIGGLSYGVDDQSLRDAFASFGEVVEARVITDRDTGRSRGFGFVNFSSDEQATSALSAMDGQ 300
            + F+GGL++  ++++L  AFA+FG+V++++VITDR+TGRSRGFGFV FSS++    A+  M+G+
Sbjct:    9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGK 72
[Close]
BLAST of Ca_11404 vs. TrEMBL
Match: P93486_PEA (Glycine-rich RNA-binding protein OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 2.653e-43
Identity = 89/101 (88.12%), Postives = 96/101 (95.05%), Query Frame = 1 
Query:    1 MAFCNKIGNILRQGAAQSSPAPVSSMLNYVRFMSQSKLFIGGLSYGVDDQSLRDAFASFGEVVEARVITDRDTGRSRGFGFVNFSSDEQATSALSAMDGQN 303
            MAFCNK+GN+LRQGA QSS APVSSMLNY+R MS SKLFIGGLSYGVDDQSL+DAFAS+GEVVEARVITDRDTGRSRGFGFVNF+SDE ATSALSAMDGQ+
Sbjct:    1 MAFCNKLGNLLRQGATQSSHAPVSSMLNYLRHMSSSKLFIGGLSYGVDDQSLKDAFASYGEVVEARVITDRDTGRSRGFGFVNFTSDESATSALSAMDGQD 101
[Close]
BLAST of Ca_11404 vs. TrEMBL
Match: C6T3N5_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.610e-40
Identity = 81/101 (80.20%), Postives = 96/101 (95.05%), Query Frame = 1 
Query:    1 MAFCNKIGNILRQGAAQSSPAPVSSMLNYVRFMSQSKLFIGGLSYGVDDQSLRDAFASFGEVVEARVITDRDTGRSRGFGFVNFSSDEQATSALSAMDGQN 303
            MAFCNK+GN+LRQGAA+S+ APVSSMLNY+R MS SKLFIGGLSYGVDDQSL+DAF+ FG+VV+A+VITDRD+GRSRGFGFVNFS+DE A+SALSAMDG++
Sbjct:    1 MAFCNKVGNVLRQGAARSTQAPVSSMLNYIRCMSSSKLFIGGLSYGVDDQSLKDAFSGFGDVVDAKVITDRDSGRSRGFGFVNFSNDESASSALSAMDGKD 101
[Close]
BLAST of Ca_11404 vs. TrEMBL
Match: I1LN27_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 2.102e-40
Identity = 81/100 (81.00%), Postives = 95/100 (95.00%), Query Frame = 1 
Query:    1 MAFCNKIGNILRQGAAQSSPAPVSSMLNYVRFMSQSKLFIGGLSYGVDDQSLRDAFASFGEVVEARVITDRDTGRSRGFGFVNFSSDEQATSALSAMDGQ 300
            MAFCNK+GN+LRQGAA+S+ APVSSMLNY+R MS SKLFIGGLSYGVDDQSL+DAF+ FG+VV+A+VITDRD+GRSRGFGFVNFS+DE A+SALSAMDG+
Sbjct:    1 MAFCNKVGNVLRQGAARSTQAPVSSMLNYIRCMSSSKLFIGGLSYGVDDQSLKDAFSGFGDVVDAKVITDRDSGRSRGFGFVNFSNDESASSALSAMDGK 100
[Close]
BLAST of Ca_11404 vs. TrEMBL
Match: C6SXA0_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 4.683e-40
Identity = 80/101 (79.21%), Postives = 96/101 (95.05%), Query Frame = 1 
Query:    1 MAFCNKIGNILRQGAAQSSPAPVSSMLNYVRFMSQSKLFIGGLSYGVDDQSLRDAFASFGEVVEARVITDRDTGRSRGFGFVNFSSDEQATSALSAMDGQN 303
            MAFCNK+GN+LRQGAA+S+ APV+SMLNY+R MS SKLFIGGLSYGVDDQSL+DAF+ FG+VV+A+VITDRD+GRSRGFGFVNFS+DE A+SALSAMDG++
Sbjct:    1 MAFCNKVGNVLRQGAARSTHAPVASMLNYIRCMSSSKLFIGGLSYGVDDQSLKDAFSGFGDVVDAKVITDRDSGRSRGFGFVNFSNDESASSALSAMDGKD 101
[Close]
BLAST of Ca_11404 vs. TrEMBL
Match: G7JA80_MEDTR (Glycine-rich RNA-binding protein OS=Medicago truncatula GN=MTR_3g084040 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 5.178e-39
Identity = 83/101 (82.18%), Postives = 93/101 (92.08%), Query Frame = 1 
Query:    1 MAFCNKIGNILRQGAAQSSPAPVSSMLNYVRFMSQSKLFIGGLSYGVDDQSLRDAFASFGEVVEARVITDRDTGRSRGFGFVNFSSDEQATSALSAMDGQN 303
            MAFCNKIGN+LRQGA QS+ APVSSMLNY+R MS SKLFIGGLSY VDDQSLRDAF ++G+VVEARVITDR+TGRSRGFGFVNF+S+E ATSALS MDGQ+
Sbjct:    1 MAFCNKIGNLLRQGATQSTQAPVSSMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALS-MDGQD 100
[Close]
BLAST of Ca_11404 vs. TrEMBL
Match: I1MYA1_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 7.477e-38
Identity = 79/101 (78.22%), Postives = 94/101 (93.07%), Query Frame = 1 
Query:    1 MAFCNKIGNILRQGAAQSSPAPVSSMLNYVRFMSQSKLFIGGLSYGVDDQSLRDAFASFGEVVEARVITDRDTGRSRGFGFVNFSSDEQATSALSAMDGQN 303
            MAFCNK+GN+LRQGAA+S+ APV+SMLNY+R MS SKLFIGGLSYGVDDQSL+DAF+ FG+VV+  VITDRD+GRSRGFGFVNFS+DE A+SALSAMDG++
Sbjct:    1 MAFCNKVGNVLRQGAARSTHAPVASMLNYIRCMSSSKLFIGGLSYGVDDQSLKDAFSGFGDVVD--VITDRDSGRSRGFGFVNFSNDESASSALSAMDGKD 99
[Close]
BLAST of Ca_11404 vs. TrEMBL
Match: I3T3M6_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 9.766e-38
Identity = 79/101 (78.22%), Postives = 90/101 (89.11%), Query Frame = 1 
Query:    1 MAFCNKIGNILRQGAAQSSPAPVSSMLNYVRFMSQSKLFIGGLSYGVDDQSLRDAFASFGEVVEARVITDRDTGRSRGFGFVNFSSDEQATSALSAMDGQN 303
            MAF NK+GN+LRQGAAQ S APV+SMLNY+R MS SKLFIGGLSYGVDD+SL DAF+SFG V EARVI DRDTGRSRGFGFV+F S+E A+SALS+MDGQ+
Sbjct:    1 MAFLNKVGNVLRQGAAQRSQAPVASMLNYIRCMSSSKLFIGGLSYGVDDKSLEDAFSSFGTVAEARVIVDRDTGRSRGFGFVSFDSEESASSALSSMDGQD 101
[Close]
BLAST of Ca_11404 vs. TrEMBL
Match: I3T8D1_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 4.847e-37
Identity = 78/101 (77.23%), Postives = 89/101 (88.12%), Query Frame = 1 
Query:    1 MAFCNKIGNILRQGAAQSSPAPVSSMLNYVRFMSQSKLFIGGLSYGVDDQSLRDAFASFGEVVEARVITDRDTGRSRGFGFVNFSSDEQATSALSAMDGQN 303
            MAF NK+GN+LRQ AAQ S APV+SMLNY+R MS SKLFIGGLSYGVDD+SL DAF+SFG V EARVI DRDTGRSRGFGFV+F S+E A+SALS+MDGQ+
Sbjct:    1 MAFLNKVGNVLRQAAAQRSQAPVASMLNYIRCMSSSKLFIGGLSYGVDDKSLEDAFSSFGTVAEARVIVDRDTGRSRGFGFVSFDSEESASSALSSMDGQD 101
[Close]
BLAST of Ca_11404 vs. TrEMBL
Match: B9S9Z2_RICCO (Glycine-rich RNA-binding protein, putative OS=Ricinus communis GN=RCOM_0523760 PE=4 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.724e-34
Identity = 74/100 (74.00%), Postives = 86/100 (86.00%), Query Frame = 1 
Query:    1 MAFCNKIGNILRQGAAQSSPAPVSSMLNYVRFMSQSKLFIGGLSYGVDDQSLRDAFASFGEVVEARVITDRDTGRSRGFGFVNFSSDEQATSALSAMDGQ 300
            MAFCNKIG+++RQ  AQ+   PVSSMLN +R MS SKLFIGGLSYG +D SL+DAF+ FG+VV ARVITDRDTGRSRGFGFV+FSS + A+SALSAMDGQ
Sbjct:    1 MAFCNKIGSLVRQSVAQNGKVPVSSMLNSIRCMSSSKLFIGGLSYGTNDDSLKDAFSGFGDVVTARVITDRDTGRSRGFGFVDFSSVDSASSALSAMDGQ 100
[Close]
BLAST of Ca_11404 vs. TrEMBL
Match: A5C101_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0029g00440 PE=4 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 8.555e-34
Identity = 73/104 (70.19%), Postives = 89/104 (85.58%), Query Frame = 1 
Query:    1 MAFCNKIGNILRQGAAQSSPAP----VSSMLNYVRFMSQSKLFIGGLSYGVDDQSLRDAFASFGEVVEARVITDRDTGRSRGFGFVNFSSDEQATSALSAMDGQ 300
            MAFCN+ GN+LRQ  +Q+S +     + ++LN +R MS +KLFIGGLSYG DDQSL+DAF+SFG+VVEARVITDRDTGRSRGFGFVNF+SD+ A+SALSAMDGQ
Sbjct:    1 MAFCNRFGNLLRQSISQNSASKGQGSMGALLNSIRCMSSAKLFIGGLSYGTDDQSLKDAFSSFGDVVEARVITDRDTGRSRGFGFVNFTSDDSASSALSAMDGQ 104
[Close]
BLAST of Ca_11404 vs. DB:Swiss
Match: RBG4_ARATH (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG4 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.606e-41
Identity = 65/100 (65.00%), Postives = 80/100 (80.00%), Query Frame = 1 
Query:    1 MAFCNKIGNILRQGAAQSSPAPVSSMLNYVRFMSQSKLFIGGLSYGVDDQSLRDAFASFGEVVEARVITDRDTGRSRGFGFVNFSSDEQATSALSAMDGQ 300
            MAFCNK+  ILRQG +QSS  PV+SML  +R+MS SKLF+GGLS+G DD SL+ AF SFGEV EA VI DR+TGRSRGFGFV+FS ++ A +A+  MDG+
Sbjct:    1 MAFCNKLSGILRQGVSQSSNGPVTSMLGSLRYMS-SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGK 99
[Close]
BLAST of Ca_11404 vs. DB:Swiss
Match: RBG2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG2 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.335e-40
Identity = 64/100 (64.00%), Postives = 81/100 (81.00%), Query Frame = 1 
Query:    1 MAFCNKIGNILRQGAAQSSPAPVSSMLNYVRFMSQSKLFIGGLSYGVDDQSLRDAFASFGEVVEARVITDRDTGRSRGFGFVNFSSDEQATSALSAMDGQ 300
            MAFCNK+G +LRQ  + +   PV+SML  +R MS +KLFIGGLS+G DD SLRDAFA FG+VV+A+VI DR+TGRSRGFGFVNF+ +  AT+A+S MDG+
Sbjct:    1 MAFCNKLGGLLRQNISSNGNVPVTSMLGSLRLMS-TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGK 99
[Close]
BLAST of Ca_11404 vs. DB:Swiss
Match: RT19_ARATH (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS19 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 3.042e-33
Identity = 59/100 (59.00%), Postives = 76/100 (76.00%), Query Frame = 1 
Query:    1 MAFCNKIGNILRQGAAQSSPAPVSSMLNYVRFMSQSKLFIGGLSYGVDDQSLRDAFASFGEVVEARVITDRDTGRSRGFGFVNFSSDEQATSALSAMDGQ 300
            MAFC K+G   +QG       PVSSML  +R+MS +KL+IGGLS G D+ SL+DAF+SF  V EARV+T++ TGRSRG+GFVNF S++ A SA+SAM+GQ
Sbjct:    1 MAFCTKLGGHWKQGVN----VPVSSMLGSLRYMS-TKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQ 95
[Close]
BLAST of Ca_11404 vs. DB:Swiss
Match: RBG3_ARATH (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.810e-31
Identity = 58/105 (55.24%), Postives = 77/105 (73.33%), Query Frame = 1 
Query:    1 MAFCNKIGNILRQGAAQSSPAPVS----SMLNYVRFMSQSKLFIGGLSYGVDDQSLRDAFASFGEVVEARVITDRDTGRSRGFGFVNFSSDEQATSALSAMDGQN 303
            MAF +K GNIL+Q   +   A VS    S+   +R MS SKLFIGG++Y +D+ SLR+AF  +GEVV+ RVI DR+TGRSRGFGFV F+S E A+SA+ A+DG++
Sbjct:    1 MAFLSKFGNILKQTTNKQLNAQVSLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRD 105
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BLAST of Ca_11404 vs. DB:Swiss
Match: RBG5_ARATH (Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG5 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.333e-26
Identity = 50/101 (49.50%), Postives = 76/101 (75.25%), Query Frame = 1 
Query:    1 MAFCNKIGNILRQGAAQSSPAPVSSMLNYVRFMSQSKLFIGGLSYGVDDQSLRDAFASFGEVVEARVITDRDTGRSRGFGFVNFSSDEQATSALSAMDGQN 303
            MAF +K+G +  Q ++  + +  SSML  +R MS SK+F+GG+SY  D+  LR+AF+ +GEVV+A++I DR+TGRSRGF FV F+S E+A++A+  +DGQ+
Sbjct:    1 MAFLSKVGRLFSQTSSHVTAS--SSMLQSIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQD 98
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BLAST of Ca_11404 vs. DB:Swiss
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare OX=4513 GN=blt801 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.080e-21
Identity = 36/67 (53.73%), Postives = 55/67 (82.09%), Query Frame = 1 
Query:  103 QSKLFIGGLSYGVDDQSLRDAFASFGEVVEARVITDRDTGRSRGFGFVNFSSDEQATSALSAMDGQN 303
            + + F+GGL +  DDQSL++AF+ +G+V+++++ITDR+TGRSRGFGFV F+SDE    A+ AM+GQ+
Sbjct:    5 EYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQD 71
[Close]
BLAST of Ca_11404 vs. DB:Swiss
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays OX=4577 GN=RAB15 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.999e-19
Identity = 33/66 (50.00%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:  103 QSKLFIGGLSYGVDDQSLRDAFASFGEVVEARVITDRDTGRSRGFGFVNFSSDEQATSALSAMDGQ 300
            + + F+GGL++   ++SL +AFAS+GE+++++VITDR+TGRSRGFGFV FSS+     A+  M+G+
Sbjct:    7 EYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGK 72
[Close]
BLAST of Ca_11404 vs. DB:Swiss
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.003e-18
Identity = 32/64 (50.00%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  109 KLFIGGLSYGVDDQSLRDAFASFGEVVEARVITDRDTGRSRGFGFVNFSSDEQATSALSAMDGQ 300
            + F+GGL++  ++++L  AFA+FG+V++++VITDR+TGRSRGFGFV FSS++    A+  M+G+
Sbjct:    9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGK 72
[Close]
BLAST of Ca_11404 vs. DB:Swiss
Match: RBG6_ARATH (Glycine-rich RNA-binding protein 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG6 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.196e-18
Identity = 44/101 (43.56%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:    1 MAFCNKIGNILRQG-AAQSSPAPVSSMLNYVRFMSQSKLFIGGLSYGVDDQSLRDAFASFGEVVEARVITDRDTGRSRGFGFVNFSSDEQATSALSAMDGQ 300
            M   ++ GNI RQ  A Q+S A +   L+    ++ SK+F+GGLS   D + L++AF SFG++V+A V+ DR++G SRGFGFV + S E A +A+ AM  +
Sbjct:    4 MGLFSRAGNIFRQPRALQASNAMLQGNLS----LTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAMQNK 100
[Close]
BLAST of Ca_11404 vs. DB:Swiss
Match: RBM3_MOUSE (RNA-binding protein 3 OS=Mus musculus OX=10090 GN=Rbm3 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.754e-18
Identity = 33/66 (50.00%), Postives = 50/66 (75.76%), Query Frame = 1 
Query:  103 QSKLFIGGLSYGVDDQSLRDAFASFGEVVEARVITDRDTGRSRGFGFVNFSSDEQATSALSAMDGQ 300
            + KLF+GGL++  D+Q+L D F+SFG + E  V+ DR+T RSRGFGF+ F++ E A+ A+ AM+G+
Sbjct:    5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGE 70
The following BLAST results are available for this feature:
BLAST of Ca_11404 vs. SwissProt
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs Swissprot)
Total hits: 25
Match NameE-valueIdentityDescription
RBG4_ARATH5.247e-3165.00Glycine-rich RNA-binding protein 4, mitochondrial ... [more]
RBG2_ARATH1.994e-3064.00Glycine-rich RNA-binding protein 2, mitochondrial ... [more]
RBG3_ARATH1.479e-2555.24Glycine-rich RNA-binding protein 3, mitochondrial ... [more]
RT19_ARATH1.252e-2459.0040S ribosomal protein S19, mitochondrial OS=Arabid... [more]
RBG5_ARATH3.409e-2249.50Glycine-rich RNA-binding protein 5, mitochondrial ... [more]
GRP_HORVU4.313e-1755.38Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]
RBG6_ARATH5.272e-1543.56Glycine-rich RNA-binding protein 6, mitochondrial ... [more]
GRPA_MAIZE1.174e-1451.56Glycine-rich RNA-binding, abscisic acid-inducible ... [more]
RBM3_MOUSE1.534e-1449.25Putative RNA-binding protein 3 OS=Mus musculus GN=... [more]
GRP2_SORBI1.534e-1450.00Glycine-rich RNA-binding protein 2 OS=Sorghum bico... [more]

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BLAST of Ca_11404 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
P93486_PEA2.653e-4388.12Glycine-rich RNA-binding protein OS=Pisum sativum ... [more]
C6T3N5_SOYBN1.610e-4080.20Putative uncharacterized protein OS=Glycine max PE... [more]
I1LN27_SOYBN2.102e-4081.00Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
C6SXA0_SOYBN4.683e-4079.21Putative uncharacterized protein OS=Glycine max PE... [more]
G7JA80_MEDTR5.178e-3982.18Glycine-rich RNA-binding protein OS=Medicago trunc... [more]
I1MYA1_SOYBN7.477e-3878.22Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
I3T3M6_LOTJA9.766e-3878.22Uncharacterized protein OS=Lotus japonicus PE=2 SV... [more]
I3T8D1_LOTJA4.847e-3777.23Uncharacterized protein OS=Lotus japonicus PE=2 SV... [more]
B9S9Z2_RICCO1.724e-3474.00Glycine-rich RNA-binding protein, putative OS=Rici... [more]
A5C101_VITVI8.555e-3470.19Putative uncharacterized protein OS=Vitis vinifera... [more]

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BLAST of Ca_11404 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
RBG4_ARATH2.606e-4165.00Glycine-rich RNA-binding protein 4, mitochondrial ... [more]
RBG2_ARATH4.335e-4064.00Glycine-rich RNA-binding protein 2, mitochondrial ... [more]
RT19_ARATH3.042e-3359.0040S ribosomal protein S19, mitochondrial OS=Arabid... [more]
RBG3_ARATH6.810e-3155.24Glycine-rich RNA-binding protein 3, mitochondrial ... [more]
RBG5_ARATH1.333e-2649.50Glycine-rich RNA-binding protein 5, mitochondrial ... [more]
GRP_HORVU1.080e-2153.73Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]
GRPA_MAIZE7.999e-1950.00Glycine-rich RNA-binding, abscisic acid-inducible ... [more]
GRP2_SORBI2.003e-1850.00Glycine-rich RNA-binding protein 2 OS=Sorghum bico... [more]
RBG6_ARATH2.196e-1843.56Glycine-rich RNA-binding protein 6, mitochondrial ... [more]
RBM3_MOUSE4.754e-1850.00RNA-binding protein 3 OS=Mus musculus OX=10090 GN=... [more]
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InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 38..100
score: 8.9
IPR000504RNA recognition motif domainSMARTSM00360RNA recognition motifcoord: 37..111
score: 2.7
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 36..100
score: 18
IPR012677Nucleotide-binding, alpha-beta plaitGENE3D3.30.70.330no descriptioncoord: 34..100
score: 1.9
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 31..101
score: 5.5
NoneNo IPR availablePANTHERPTHR24012:SF31SUBFAMILY NOT NAMEDcoord: 31..101
score: 5.5
NoneNo IPR availableSUPERFAMILY54928RNA-binding domain, RBDcoord: 10..100
score: 6.1

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_11404_v1.0_kabuli ID=Ca_11404_v1.0_kabuli; Name=Ca_11404; organism=Cicer arietinum; type=mRNA; length=342bp
ATGGCTTTCTGTAATAAGATCGGAAATATCTTGAGGCAGGGTGCTGCCCA
GAGCAGCCCAGCTCCTGTTTCGTCCATGCTTAACTACGTTCGCTTCATGT
CTCAAAGCAAGCTTTTCATTGGAGGACTTTCATATGGAGTTGATGACCAG
TCTCTTAGGGATGCATTTGCAAGTTTTGGAGAAGTGGTTGAGGCAAGAGT
TATCACTGATAGAGACACTGGAAGATCAAGGGGATTTGGATTTGTCAATT
TCTCCAGTGATGAACAAGCAACTTCAGCACTATCTGCTATGGATGGGCAG
AATGACGTGGCTGAGGAAATGCTTGGAACAGCAGCTAGTTAG
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protein sequence of Ca_11404_v1.0_kabuli

>Ca_11404_v1.0_kabuli ID=Ca_11404_v1.0_kabuli; Name=Ca_11404_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=113bp
MAFCNKIGNILRQGAAQSSPAPVSSMLNYVRFMSQSKLFIGGLSYGVDDQ
SLRDAFASFGEVVEARVITDRDTGRSRGFGFVNFSSDEQATSALSAMDGQ
NDVAEEMLGTAAS
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mRNA from alignment at Ca5:42074109..42075324+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_11404_v1.0_kabuli ID=Ca_11404_v1.0_kabuli; Name=Ca_11404; organism=Cicer arietinum; type=mRNA; length=1216bp; location=Sequence derived from: Ca5:42074109..42075324+ (Cicer arietinum
ATGGCTTTCTGTAATAAGATCGGAAATATCTTGAGGCAGGGTGCTGCCCA
GAGCAGCCCAGCTCCTGTTTCGTCCATGCTTAACTACGTTCGCTTCATGT
CTCAAAGCAAGCTTTTCATTGGAGGTATAACTTTGGTTTTAAATGTTAAC
TTTTTAACTTTTATTATGTATATATGTTGGCACACATAAGTCGCATAATT
TTGATTTTTGCTGTTATAGGACTTTCATATGGAGTTGATGACCAGTCTCT
TAGGGATGCATTTGCAAGTTTTGGAGAAGTGGTTGAGGGTTAGTTCATCT
GAATTTTATTTTGTTAGTGGTTTGATTACAATATCCTGCTGGCTTCATTT
AATATGTTTTCCTCTCCCCTTTGATATCATTATAATGTTGCTTTTACATG
TAGATGCACTATAAGAACTTTGTTAGCTTTAGGAATTTGTATTTGGTGAA
AAAATATTCCGGAATTTATTCTTGGAATTTCAGAGTTTTTAGGCATGGCT
AATATATCTTATTGTGATTCTGATGTGAACAGTAACATGCATTAAAATGA
AAAAAAATATTTGTTTTATGATTTTATAACTTAAATGATCTGCTTATGTT
GCTAAAATCATAATTTTCCTATTTTTTTAGCAAGAGTTATCACTGATAGA
GACACTGGAAGATCAAGGGGATTTGGATTTGTCAATTTCTCCAGTGATGA
ACAAGCAACTTCAGCACTATCTGCTATGGATGGGCAGGTTGTTATATCTT
CCTATTAAATAATAGTCATTTTTTATTGCCATTGTTAGTTAGTTGACTGA
CATGCTCTAGTTCCTCAGGATTTGAATGGGAGAAACATTCGTGTGTCCTA
TGCAAATGATAGACCTTCTGCTCCTCGTGGTGGCGGTGGCTATGGTGGTG
GCTATGGTGATGGTTTTAACTCTCGCAGTGGTGGTGGTGGTGGCAGCGGT
GGCTGGTGATGCGATCTTTCAATTTTAAATGCTTTGCTGCCAATGTTTTG
TGTTTTGTTTTGAGTTCTTGTGTTTATGTCAAAATTCAATCAAGGTTACT
GCCCATGTGGTAAATCACTCTAATTAGTGAAATGTTATGACTTTTTTGTT
GGGATATTTTGGTTGTGTTATGTCATGCAATAGTTTTCAAGGTTAGGTGT
GTTTTAAATCAAATAAAATTGTAGAATGACGTGGCTGAGGAAATGCTTGG
AACAGCAGCTAGTTAG
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Coding sequence (CDS) from alignment at Ca5:42074109..42075324+

>Ca_11404_v1.0_kabuli ID=Ca_11404_v1.0_kabuli; Name=Ca_11404; organism=Cicer arietinum; type=CDS; length=342bp; location=Sequence derived from: Ca5:42074109..42075324+ (Cicer arietinum
ATGGCTTTCTGTAATAAGATCGGAAATATCTTGAGGCAGGGTGCTGCCCA
GAGCAGCCCAGCTCCTGTTTCGTCCATGCTTAACTACGTTCGCTTCATGT
CTCAAAGCAAGCTTTTCATTGGAGGACTTTCATATGGAGTTGATGACCAG
TCTCTTAGGGATGCATTTGCAAGTTTTGGAGAAGTGGTTGAGGCAAGAGT
TATCACTGATAGAGACACTGGAAGATCAAGGGGATTTGGATTTGTCAATT
TCTCCAGTGATGAACAAGCAACTTCAGCACTATCTGCTATGGATGGGCAG
AATGACGTGGCTGAGGAAATGCTTGGAACAGCAGCTAGTTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding