Ca_12661, Ca_12661_v1.0_kabuli (mRNA) Cicer arietinum

Transcript Overview
NameCa_12661
Unique NameCa_12661_v1.0_kabuli
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length621
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca5chromosomeCa5:43935967..43936587 +Cicer arietinum CDC Frontier genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
capsR406Pisum sativum Cameor genome v1aPisum sativum
capsR425Pisum sativum Cameor genome v1aPisum sativum
cavuR424Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
cavuR443Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
capvR429Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
capvR496Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caccR0611Cajanus cajan Asha genome v1.0Cajanus cajan
caccR0621Cajanus cajan Asha genome v1.0Cajanus cajan
caccR0701Cajanus cajan Asha genome v1.0Cajanus cajan
ancaL0181Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0338Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0391Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0649Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0756Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaL050Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaL569Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaL752Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaL775Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cazwsR372Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
cazwsR390Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
catifR378Vicia faba cv. Tiffany genome v1.0Vicia faba
cavfhR379Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavrvR421Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavrvR433Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavssR417Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavssR471Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavuaR412Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cacanR183Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cacanR189Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjcaL269Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcaL559Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcaL749Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
cacarR376Cicer arietinum
cacarR380Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
rna-TanjilR_12093Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vfaba.Hedin2.R1.2g120120.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
jg53792.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-KK1_001338Cajanus cajan Asha genome v1.0Cajanus cajan
Psat5g087040.1Pisum sativum Cameor genome v1aPisum sativum
LR48_mrnaVigan04g177000Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Psat05G0263200-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
rna-TanjilR_09207Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigun09g165000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
evm.model.Chr09.2032Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Va04G055180.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Phvul.009G125700.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vfaba.Tiffany.R1.2g098360.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-KK1_032794Cajanus cajan Asha genome v1.0Cajanus cajan
rna-XM_014645306.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-XM_012716412.2Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_12661-CDS1Ca_12661-CDS1Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_12661_v1.0_kabuliCa_12661_v1.0_kabuliCicer arietinumpolypeptide


Homology
[Close]
BLAST of Ca_12661 vs. SwissProt
Match: BBR_ARATH (E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana GN=BBR PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.168e-15
Identity = 38/82 (46.34%), Postives = 56/82 (68.29%), Query Frame = 1 
Query:  373 RGLSANEISSCLNSYTSQTAESKSGIDR-CVICQIEYEKGEALVALQCDHPYHKDCISKWLQIKKVCPICSNEVSTPNKAKN 615
            RGLSA+ I+S L S   +  ++++G +  CVIC+++YE  E L+ L C H YH +CI+ WL+I KVCP+CS EVST    ++
Sbjct:  260 RGLSADTIAS-LPSKRYKEGDNQNGTNESCVICRLDYEDDEDLILLPCKHSYHSECINNWLKINKVCPVCSAEVSTSTSGQS 340
[Close]
BLAST of Ca_12661 vs. SwissProt
Match: BB_ARATH (E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.224e-12
Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:  451 DRCVICQIEYEKGEALVALQCDHPYHKDCISKWLQIKKVCPICSNEV 591
            +RCVICQ++Y+ GE  + L C H YH +CISKWL I KVCP+C++EV
Sbjct:  195 ERCVICQLKYKIGERQMNLPCKHVYHSECISKWLSINKVCPVCNSEV 241
[Close]
BLAST of Ca_12661 vs. SwissProt
Match: RN126_XENTR (E3 ubiquitin-protein ligase RNF126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 2.545e-8
Identity = 24/59 (40.68%), Postives = 36/59 (61.02%), Query Frame = 1 
Query:  442 SGIDRCVICQIEYEKGEALVALQCDHPYHKDCISKWLQIKKVCPICSNEVSTPNKAKNP 618
            SG++ C +C+ +Y  GE++  L C+H +H DCI  WL+    CP+C   +S  N A NP
Sbjct:  223 SGLE-CPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSLSGQNTATNP 280
[Close]
BLAST of Ca_12661 vs. SwissProt
Match: R126B_XENLA (RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 2.545e-8
Identity = 26/68 (38.24%), Postives = 36/68 (52.94%), Query Frame = 1 
Query:  418 TSQTAESKSGID-RCVICQIEYEKGEALVALQCDHPYHKDCISKWLQIKKVCPICSNEVSTPNKAKNP 618
            T Q  E   G    C +C+ +Y  GE++  L C+H +H DCI  WL+    CP+C   +S  N A NP
Sbjct:  214 TIQITEEHVGFGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSLSGQNTATNP 281
[Close]
BLAST of Ca_12661 vs. SwissProt
Match: R126A_XENLA (RING finger protein 126-A OS=Xenopus laevis GN=rnf126-a PE=2 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 3.324e-8
Identity = 24/59 (40.68%), Postives = 35/59 (59.32%), Query Frame = 1 
Query:  442 SGIDRCVICQIEYEKGEALVALQCDHPYHKDCISKWLQIKKVCPICSNEVSTPNKAKNP 618
            SG++ C +C+ +Y  GE +  L C+H +H DCI  WL+    CP+C   +S  N A NP
Sbjct:  224 SGLE-CPVCKEDYTVGECVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSLSGQNTATNP 281
[Close]
BLAST of Ca_12661 vs. SwissProt
Match: RNF38_MOUSE (RING finger protein 38 OS=Mus musculus GN=Rnf38 PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 4.341e-8
Identity = 26/74 (35.14%), Postives = 40/74 (54.05%), Query Frame = 1 
Query:  373 RGLSANEISSCLNSYTSQTAESKSGIDRCVICQIEYEKGEALVALQCDHPYHKDCISKWLQIKKVCPICSNEVS 594
            RGL+  +I   L SY    +  +S    CV+C  ++E  + L  L C+H +H  C+ KWL+  + CPIC  + S
Sbjct:  439 RGLTKADIEQ-LPSYRFNPSNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKGNRTCPICRADAS 511
[Close]
BLAST of Ca_12661 vs. SwissProt
Match: RNF38_HUMAN (RING finger protein 38 OS=Homo sapiens GN=RNF38 PE=1 SV=4)

HSP 1 Score: 58.151 bits (139), Expect = 4.341e-8
Identity = 26/74 (35.14%), Postives = 39/74 (52.70%), Query Frame = 1 
Query:  373 RGLSANEISSCLNSYTSQTAESKSGIDRCVICQIEYEKGEALVALQCDHPYHKDCISKWLQIKKVCPICSNEVS 594
            RGL+  +I   L SY       +S    CV+C  ++E  + L  L C+H +H  C+ KWL+  + CPIC  + S
Sbjct:  436 RGLTKADIEQ-LPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADAS 508
[Close]
BLAST of Ca_12661 vs. SwissProt
Match: RNF44_DANRE (RING finger protein 44 OS=Danio rerio GN=rnf44 PE=2 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 9.671e-8
Identity = 26/74 (35.14%), Postives = 39/74 (52.70%), Query Frame = 1 
Query:  373 RGLSANEISSCLNSYTSQTAESKSGIDRCVICQIEYEKGEALVALQCDHPYHKDCISKWLQIKKVCPICSNEVS 594
            RGL+  +I   L SY       +S    CV+C  ++E  + L  L C+H +H  C+ KWL+  + CPIC  + S
Sbjct:  369 RGLTKADIEQ-LPSYRFNLENHQSEQTLCVVCFSDFESRQLLRVLPCNHEFHAKCVDKWLKTNRTCPICRADAS 441
[Close]
BLAST of Ca_12661 vs. SwissProt
Match: RNF44_HUMAN (RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 1.263e-7
Identity = 28/81 (34.57%), Postives = 43/81 (53.09%), Query Frame = 1 
Query:  373 RGLSANEISSCLNSYTSQTAESKSGIDRCVICQIEYEKGEALVALQCDHPYHKDCISKWLQIKKVCPICSNEVS-TPNKAK 612
            RGL+  +I   L SY       +S    CV+C  ++E  + L  L C+H +H  C+ KWL+  + CPIC  + S  P +A+
Sbjct:  353 RGLTKADIEQ-LPSYRFNPDSHQSEQTLCVVCFSDFEARQLLRVLPCNHEFHTKCVDKWLKANRTCPICRADASEVPREAE 432
[Close]
BLAST of Ca_12661 vs. SwissProt
Match: RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=2 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 1.263e-7
Identity = 19/52 (36.54%), Postives = 32/52 (61.54%), Query Frame = 1 
Query:  442 SGIDRCVICQIEYEKGEALVALQCDHPYHKDCISKWLQIKKVCPICSNEVST 597
            S  ++C +C  ++E+G     + C H YHKDC+  WL++   CP+C +E+ T
Sbjct:  219 SEFNQCAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCRHELPT 270
[Close]
BLAST of Ca_12661 vs. TrEMBL
Match: G7J4X5_MEDTR (RING finger protein OS=Medicago truncatula GN=MTR_3g088100 PE=4 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 1.323e-57
Identity = 128/210 (60.95%), Postives = 133/210 (63.33%), Query Frame = 1 
Query:    1 MEREEGKQSSPKNPYTELEEVSLDFTLAIGLQEQG---RTFTNLATIXXXXXXXXXXXXXXXXXIGDADFSFSQEFETDLQFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--KRGLSANEISSCLNSYTSQTAESKSGIDRCVICQIEYEKGEALVALQCDHPYHKDCISKWLQIKKVCPICSNEVSTPNKAKN 615
            MEREEGKQSS KNPYTELEEVS DF LAIGLQEQ     TFTNLATI                 IGDADFSFSQEFETDLQF+                                             KRGL ANEISSCL+ YTS+ AES SGIDRCVICQIEYE+GE+LVAL CDHPYH DCISKWLQIKKVCPICSNEVST NKAKN
Sbjct:    1 MEREEGKQSSEKNPYTELEEVSSDFVLAIGLQEQELERTTFTNLATIESESDEDISDSSFSNDDIGDADFSFSQEFETDLQFVEDEGSNIDDDDDYEDDEMELEEDEVDPDELSYEELIELGNFIGEEKRGLPANEISSCLHPYTSKIAESTSGIDRCVICQIEYEEGESLVALHCDHPYHTDCISKWLQIKKVCPICSNEVSTTNKAKN 210
[Close]
BLAST of Ca_12661 vs. TrEMBL
Match: C6T2M3_SOYBN (Uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 3.156e-51
Identity = 114/206 (55.34%), Postives = 121/206 (58.74%), Query Frame = 1 
Query:    1 MEREEGKQSSPKNPYTELEEVSLDFTLAIGLQEQGRTFTNLATIXXXXXXXXXXXXXXXXXIGDADFSFSQEFETDLQFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRGLSANEISSCLNSYTSQTAESKSGIDRCVICQIEYEKGEALVALQCDHPYHKDCISKWLQIKKVCPICSNEVSTPNKAKNP 618
            ME EEGKQSS KNPY ELEEV  DF LA+ +QEQ R FT L+TI                  GD DF  SQEFETDL+FL                                            RGLSANEIS CL  YT Q AESKSGIDRCVICQ+EYE+GEALVALQC+HPYH DCI KWLQIKKVCPIC NEVSTPN A NP
Sbjct:    1 MEGEEGKQSSQKNPYVELEEVDFDFILAMSMQEQEREFTMLSTIESESDEYLSDSSIDNDDDGDPDFIASQEFETDLRFLEGEGSDDDDEDMEMEEDEIDPDELSYEELMELEEFIGEET----RGLSANEISLCLYPYTCQCAESKSGIDRCVICQVEYEEGEALVALQCEHPYHSDCIRKWLQIKKVCPICGNEVSTPNLASNP 202
[Close]
BLAST of Ca_12661 vs. TrEMBL
Match: I1LXG7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 9.856e-37
Identity = 93/202 (46.04%), Postives = 108/202 (53.47%), Query Frame = 1 
Query:    1 MEREEGKQSSPKNPYTELEEV--SLDFTLAIGLQEQGRTFTNLATIXXXXXXXXXXXXXXXXXIGDADFSFSQEFETDLQFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRGLSANEISSCLNSYTSQTAESKSGIDRCVICQIEYEKGEALVALQCDHPYHKDCISKWLQIKKVCPICSNEVSTP 600
            MEREEGKQ   K P     E   S +F L   LQEQ  TFT  A+                   GDADF  SQEFE++LQFL                                           KRGLSA+EI SCL+ +   +AE+KSGIDRCVICQ+EYE+GE LVA+QC+HPYH DCISKWLQIKKVCPIC+ E+S P
Sbjct:    1 MEREEGKQPPQKTPLHNQHEQANSNNFVLEHNLQEQSGTFTTFASFESETEGESSFDDNDYD--GDADFFLSQEFESELQFLESEGSNYNNDDDNDEDMEEDDIDVDELTYEELIELGDFIGQE-KRGLSAHEICSCLHIHIFHSAENKSGIDRCVICQVEYEEGEPLVAIQCEHPYHTDCISKWLQIKKVCPICNTEISAP 199
[Close]
BLAST of Ca_12661 vs. TrEMBL
Match: C6TM78_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 9.856e-37
Identity = 93/202 (46.04%), Postives = 108/202 (53.47%), Query Frame = 1 
Query:    1 MEREEGKQSSPKNPYTELEEV--SLDFTLAIGLQEQGRTFTNLATIXXXXXXXXXXXXXXXXXIGDADFSFSQEFETDLQFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRGLSANEISSCLNSYTSQTAESKSGIDRCVICQIEYEKGEALVALQCDHPYHKDCISKWLQIKKVCPICSNEVSTP 600
            MEREEGKQ   K P     E   S +F L   LQEQ  TFT  A+                   GDADF  SQEFE++LQFL                                           KRGLSA+EI SCL+ +   +AE+KSGIDRCVICQ+EYE+GE LVA+QC+HPYH DCISKWLQIKKVCPIC+ E+S P
Sbjct:    1 MEREEGKQPPQKTPLHNQHEQANSNNFVLEHNLQEQSGTFTTFASFESETEGESSFDDNDYD--GDADFFLSQEFESELQFLESEGSNYNNDDDNDEDMEEDDIDVDELTYEELIELGDFIGQE-KRGLSAHEICSCLHIHIFHSAENKSGIDRCVICQVEYEEGELLVAIQCEHPYHTDCISKWLQIKKVCPICNTEISAP 199
[Close]
BLAST of Ca_12661 vs. TrEMBL
Match: K7M6Y4_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 2.196e-36
Identity = 93/205 (45.37%), Postives = 112/205 (54.63%), Query Frame = 1 
Query:    1 MEREEGKQSSPKNP-YTELEEVSLD--FTLAIGLQEQGRTFTNLATIXXXXXXXXXXXXXXXXXIGDADFSFSQEFETDLQFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--KRGLSANEISSCLNSYTSQTAESKSGIDRCVICQIEYEKGEALVALQCDHPYHKDCISKWLQIKKVCPICSNEVSTP 600
            MEREEGKQ   K P + + E+ + D  F     LQEQ  TFT  A+                    DADF  SQEFE++LQFL                                             KRGLSA+EI SCL+S+T  +AE+KSGIDRCVICQ+EYE+GE+LVA+QC+HPYH DCISKWLQIKKVCPIC+ E+S P
Sbjct:    1 MEREEGKQPPQKTPLHNQHEQANSDNNFVQENNLQEQSGTFTTFASFESETEGESSFDDNDY----DADFFLSQEFESELQFLESEGSNDNGDDYDNEDDEDMEEDEIDVDELTYEELIELGDFIGQEKRGLSAHEICSCLHSHTFHSAENKSGIDRCVICQVEYEEGESLVAIQCEHPYHTDCISKWLQIKKVCPICNIEISAP 201
[Close]
BLAST of Ca_12661 vs. TrEMBL
Match: I1MA62_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 2.196e-36
Identity = 93/205 (45.37%), Postives = 112/205 (54.63%), Query Frame = 1 
Query:    1 MEREEGKQSSPKNP-YTELEEVSLD--FTLAIGLQEQGRTFTNLATIXXXXXXXXXXXXXXXXXIGDADFSFSQEFETDLQFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--KRGLSANEISSCLNSYTSQTAESKSGIDRCVICQIEYEKGEALVALQCDHPYHKDCISKWLQIKKVCPICSNEVSTP 600
            MEREEGKQ   K P + + E+ + D  F     LQEQ  TFT  A+                    DADF  SQEFE++LQFL                                             KRGLSA+EI SCL+S+T  +AE+KSGIDRCVICQ+EYE+GE+LVA+QC+HPYH DCISKWLQIKKVCPIC+ E+S P
Sbjct:    1 MEREEGKQPPQKTPLHNQHEQANSDNNFVQENNLQEQSGTFTTFASFESETEGESSFDDNDY----DADFFLSQEFESELQFLESEGSNDNGDDYDNEDDEDMEEDEIDVDELTYEELIELGDFIGQEKRGLSAHEICSCLHSHTFHSAENKSGIDRCVICQVEYEEGESLVAIQCEHPYHTDCISKWLQIKKVCPICNIEISAP 201
[Close]
BLAST of Ca_12661 vs. TrEMBL
Match: K7KUI8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 5.408e-35
Identity = 70/82 (85.37%), Postives = 73/82 (89.02%), Query Frame = 1 
Query:  373 RGLSANEISSCLNSYTSQTAESKSGIDRCVICQIEYEKGEALVALQCDHPYHKDCISKWLQIKKVCPICSNEVSTPNKAKNP 618
            RGLSANEIS CL  YT Q AESKSGIDRCVICQ+EYE+GEALVALQC+HPYH DCISKWLQIKKVCPICSNEVSTPN   NP
Sbjct:  102 RGLSANEISLCLYPYTCQCAESKSGIDRCVICQVEYEEGEALVALQCEHPYHSDCISKWLQIKKVCPICSNEVSTPNMTSNP 183
[Close]
BLAST of Ca_12661 vs. TrEMBL
Match: M5XPQ1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020151mg PE=4 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.740e-33
Identity = 88/207 (42.51%), Postives = 110/207 (53.14%), Query Frame = 1 
Query:   10 EEGKQSSPKNPYTELEEVSLDFTLAIGLQEQGRTFTNLATIXXXXXXXXXXXXXXXXXIGDAD---FSFSQEFETDLQFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRGLSANEISSCLNSYTSQTA---ESKSGIDRCVICQIEYEKGEALVALQCDHPYHKDCISKWLQIKKVCPICSNEVSTPNKAK 612
            ++ KQS+ + P+TEL +VS DF LA+ +QEQ + +T L TI                   D D   F  S+EFET+  FL                                           KRGL +NEIS+CL  YTS++    +SK+ IDRCVICQIEYE GEALVAL C HPYH DCISKWL+IKK CPICS EVS+ + +K
Sbjct:    6 DQSKQSTRRTPFTELNQVSSDFILAMAMQEQEQAYTMLETIESDSSDEEEDDASSPNENYDQDDTAFFESREFETEFGFLANEDSGSSSDQEMDEDDFDVDELTYEELIALGEFIGEE-----KRGLPSNEISTCLQPYTSKSPSSIQSKTSIDRCVICQIEYEDGEALVALSCQHPYHWDCISKWLEIKKSCPICSTEVSSTSSSK 207
[Close]
BLAST of Ca_12661 vs. TrEMBL
Match: B9GU13_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_551425 PE=4 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.247e-31
Identity = 83/206 (40.29%), Postives = 109/206 (52.91%), Query Frame = 1 
Query:    1 MEREEGKQSSPKNPYTELEEVSLDFTLAIGLQEQGRTFTNLATIXXXXXXXXXXXXXXXXX-IGDADFSF--SQEFETDLQFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRGLSANEISSCLNSYTSQTAESKSGIDRCVICQIEYEKGEALVALQCDHPYHKDCISKWLQIKKVCPICSNEVSTPNKA 609
            +E EE KQ+S +  YT+LE+V  DF +A+ LQEQ R FT L +I                    D D+ F  S EFE++++FL                                           KRGLS NEIS+CL     ++  SK+G DRCVICQ+EYE+ E+LVAL CDHPYH +CI+ WLQI K+CPIC+ EVS+P K+
Sbjct:   10 VEDEERKQASSRVCYTQLEQVHSDFAIAMVLQEQERAFTILTSIESDSNEEESDEASSSESGADDNDYEFFQSHEFESEMEFLQEGEDSNSDEDMEEDEVDPDELSYEDLIALGEFVGQE------KRGLSRNEISTCLRPCKYESLASKTGTDRCVICQMEYEEDESLVALSCDHPYHPECIANWLQINKICPICTTEVSSPYKS 209
[Close]
BLAST of Ca_12661 vs. TrEMBL
Match: B9H7H3_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_559262 PE=4 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 6.841e-30
Identity = 81/203 (39.90%), Postives = 106/203 (52.22%), Query Frame = 1 
Query:    1 MEREEGKQSSPKNPYTELEEVSLDFTLAIGLQEQGRTFTNLATIXXXXXXXXXXXXXXXXXI-GDADFSFSQ--EFETDLQFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRGLSANEISSCLNSYTSQTAESKSGIDRCVICQIEYEKGEALVALQCDHPYHKDCISKWLQIKKVCPICSNEVSTP 600
            ME EE K +S   P T+LE+V  D  +A+ LQEQ R FT L TI                   G  D+ F Q  EFE++++F                                            KRGLS NEIS+CL+ +  ++  +K+G DRCVICQ+EYE+ E+LVAL CDHPYH +C++KWLQI K+CPICS EVS+P
Sbjct:    1 MENEERKLASRWVPCTQLEQVHPDNAIAMVLQEQERAFTILTTIESDSNKEESDEASSIDSNEGGNDYEFFQSLEFESEMEF--QQEGQDSDSDEDMEEEEDEDEIDLDELSYEELIALGEFIGQEKRGLSVNEISTCLHPWKYRSLANKTGTDRCVICQMEYEEDESLVALSCDHPYHSECLTKWLQINKICPICSTEVSSP 201
[Close]
BLAST of Ca_12661 vs. DB:Swiss
Match: BBR_ARATH (E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana OX=3702 GN=BBR PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.300e-17
Identity = 38/76 (50.00%), Postives = 54/76 (71.05%), Query Frame = 1 
Query:  373 RGLSANEISSCLNSYTSQTAESKSGIDR-CVICQIEYEKGEALVALQCDHPYHKDCISKWLQIKKVCPICSNEVST 597
            RGLSA+ I+S L S   +  ++++G +  CVIC+++YE  E L+ L C H YH +CI+ WL+I KVCP+CS EVST
Sbjct:  260 RGLSADTIAS-LPSKRYKEGDNQNGTNESCVICRLDYEDDEDLILLPCKHSYHSECINNWLKINKVCPVCSAEVST 334
[Close]
BLAST of Ca_12661 vs. DB:Swiss
Match: BB_ARATH (E3 ubiquitin-protein ligase BIG BROTHER OS=Arabidopsis thaliana OX=3702 GN=BB PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.832e-14
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:  439 KSGIDRCVICQIEYEKGEALVALQCDHPYHKDCISKWLQIKKVCPICSNEV 591
            K   +RCVICQ++Y+ GE  + L C H YH +CISKWL I KVCP+C++EV
Sbjct:  191 KRAGERCVICQLKYKIGERQMNLPCKHVYHSECISKWLSINKVCPVCNSEV 241
[Close]
BLAST of Ca_12661 vs. DB:Swiss
Match: MBR1_ARATH (E3 ubiquitin-protein ligase MBR1 OS=Arabidopsis thaliana OX=3702 GN=MBR1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.172e-12
Identity = 29/64 (45.31%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:  412 SYTSQTAESKSGIDRCVICQIEYEKGEALVALQCDHPYHKDCISKWLQIKKVCPICSNE-VSTP 600
            S +  + E    I+ C ICQ EY +G+ L  L+C H +HKDCI +W+ IK +CPIC  E + TP
Sbjct:  641 SSSPSSVELHQNIEPCCICQEEYVEGDNLGTLKCGHEFHKDCIKQWVMIKNLCPICKTEALKTP 704
[Close]
BLAST of Ca_12661 vs. DB:Swiss
Match: ZFP1_ORYSJ (Probable E3 ubiquitin-protein ligase ZFP1 OS=Oryza sativa subsp. japonica OX=39947 GN=ZFP1 PE=1 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 3.151e-11
Identity = 28/61 (45.90%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:  397 SSCLNSYTSQTAESKSGIDRCVICQIEYEKGEALVALQCDHPYHKDCISKWLQIKKVCPIC 579
            SSC+   +++++ES    D C+ICQ EY+  E +  L C H YH+DCI +WL +K +CPIC
Sbjct:  454 SSCM---SNKSSESSMENDACIICQEEYQVKECIGTLDCGHRYHEDCIKQWLMVKNLCPIC 511
[Close]
BLAST of Ca_12661 vs. DB:Swiss
Match: HIP1_ORYSJ (Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza sativa subsp. japonica OX=39947 GN=HIP1 PE=1 SV=2)

HSP 1 Score: 61.6178 bits (148), Expect = 5.931e-10
Identity = 28/72 (38.89%), Postives = 39/72 (54.17%), Query Frame = 1 
Query:  376 GLSANEISSCLNS--YTSQTAESKSGIDRCVICQIEYEKGEALVALQCDHPYHKDCISKWLQIKKVCPICSN 585
            GLS  E++  L    ++S   E+    + C ICQ EY  G+ L  L C H +H  C+ +WL +K  CPIC N
Sbjct:  591 GLSEEEVTKLLKQRKFSSWRLEASVEEEPCCICQEEYVDGDDLGTLDCGHDFHVGCVRQWLVVKNTCPICKN 662
[Close]
BLAST of Ca_12661 vs. DB:Swiss
Match: MBR2_ARATH (E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana OX=3702 GN=MBR2 PE=1 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 1.170e-9
Identity = 23/57 (40.35%), Postives = 35/57 (61.40%), Query Frame = 1 
Query:  409 NSYTSQTAESKSGIDRCVICQIEYEKGEALVALQCDHPYHKDCISKWLQIKKVCPIC 579
            + +TS  A S   ++ C +CQ EY +G+ L  L C H +H  C+ +WL +K +CPIC
Sbjct:  603 HKHTSSAAGSHQDMEPCCVCQEEYAEGDDLGTLGCGHEFHTACVKQWLMLKNLCPIC 659
[Close]
BLAST of Ca_12661 vs. DB:Swiss
Match: RHG1A_ARATH (Probable E3 ubiquitin-protein ligase RHG1A OS=Arabidopsis thaliana OX=3702 GN=RHG1A PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 3.235e-9
Identity = 28/70 (40.00%), Postives = 41/70 (58.57%), Query Frame = 1 
Query:  376 GLSANEISSCLNS--YTSQTAESKSGIDRCVICQIEYEKGEALVALQCDHPYHKDCISKWLQIKKVCPIC 579
            G++   IS+ L    Y S T +S    + C +CQ EY +GE +  L+C H +H  CI +WL+ K +CPIC
Sbjct:  609 GVNEETISNRLKQRKYKSNT-KSPQDAEPCCVCQEEYTEGEDMGTLECGHEFHSQCIKEWLKQKNLCPIC 677
[Close]
BLAST of Ca_12661 vs. DB:Swiss
Match: R126B_XENLA (E3 ubiquitin-protein ligase RNF126-B OS=Xenopus laevis OX=8355 GN=rnf126-b PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 5.601e-9
Identity = 26/68 (38.24%), Postives = 36/68 (52.94%), Query Frame = 1 
Query:  418 TSQTAESKSGID-RCVICQIEYEKGEALVALQCDHPYHKDCISKWLQIKKVCPICSNEVSTPNKAKNP 618
            T Q  E   G    C +C+ +Y  GE++  L C+H +H DCI  WL+    CP+C   +S  N A NP
Sbjct:  214 TIQITEEHVGFGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSLSGQNTATNP 281
[Close]
BLAST of Ca_12661 vs. DB:Swiss
Match: RN126_XENTR (E3 ubiquitin-protein ligase RNF126 OS=Xenopus tropicalis OX=8364 GN=rnf126 PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 6.024e-9
Identity = 24/59 (40.68%), Postives = 36/59 (61.02%), Query Frame = 1 
Query:  442 SGIDRCVICQIEYEKGEALVALQCDHPYHKDCISKWLQIKKVCPICSNEVSTPNKAKNP 618
            SG++ C +C+ +Y  GE++  L C+H +H DCI  WL+    CP+C   +S  N A NP
Sbjct:  223 SGLE-CPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSLSGQNTATNP 280
[Close]
BLAST of Ca_12661 vs. DB:Swiss
Match: RHY1A_ARATH (Probable E3 ubiquitin-protein ligase RHY1A OS=Arabidopsis thaliana OX=3702 GN=RHY1A PE=2 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 1.138e-8
Identity = 26/73 (35.62%), Postives = 42/73 (57.53%), Query Frame = 1 
Query:  376 GLSANEISSCLNSYTSQTAESKSGIDRCVICQIEYEKGEALVALQCDHPYHKDCISKWLQIKKVCPICSNEVS 594
            GL+ + I+ CL+  T  +AE KS +  C IC   + KG+ L++L C H +H  C++ WL+    CP C   ++
Sbjct:  177 GLTQDAIN-CLHRQTFSSAEVKSEMRDCSICLESFTKGDMLISLPCTHSFHSSCLNPWLRACGDCPCCRRAIA 248
The following BLAST results are available for this feature:
BLAST of Ca_12661 vs. SwissProt
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs Swissprot)
Total hits: 25
Match NameE-valueIdentityDescription
BBR_ARATH8.168e-1546.34E3 ubiquitin ligase BIG BROTHER-related OS=Arabido... [more]
BB_ARATH2.224e-1259.57E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis tha... [more]
RN126_XENTR2.545e-840.68E3 ubiquitin-protein ligase RNF126 OS=Xenopus trop... [more]
R126B_XENLA2.545e-838.24RING finger protein 126-B OS=Xenopus laevis GN=rnf... [more]
R126A_XENLA3.324e-840.68RING finger protein 126-A OS=Xenopus laevis GN=rnf... [more]
RNF38_MOUSE4.341e-835.14RING finger protein 38 OS=Mus musculus GN=Rnf38 PE... [more]
RNF38_HUMAN4.341e-835.14RING finger protein 38 OS=Homo sapiens GN=RNF38 PE... [more]
RNF44_DANRE9.671e-835.14RING finger protein 44 OS=Danio rerio GN=rnf44 PE=... [more]
RNF44_HUMAN1.263e-734.57RING finger protein 44 OS=Homo sapiens GN=RNF44 PE... [more]
RING1_GOSHI1.263e-736.54E3 ubiquitin-protein ligase RING1 OS=Gossypium hir... [more]

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BLAST of Ca_12661 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
G7J4X5_MEDTR1.323e-5760.95RING finger protein OS=Medicago truncatula GN=MTR_... [more]
C6T2M3_SOYBN3.156e-5155.34Uncharacterized protein OS=Glycine max PE=2 SV=1[more]
I1LXG7_SOYBN9.856e-3746.04Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
C6TM78_SOYBN9.856e-3746.04Putative uncharacterized protein OS=Glycine max PE... [more]
K7M6Y4_SOYBN2.196e-3645.37Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
I1MA62_SOYBN2.196e-3645.37Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
K7KUI8_SOYBN5.408e-3585.37Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
M5XPQ1_PRUPE1.740e-3342.51Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
B9GU13_POPTR1.247e-3140.29Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9H7H3_POPTR6.841e-3039.90Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]

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BLAST of Ca_12661 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
BBR_ARATH9.300e-1750.00E3 ubiquitin ligase BIG BROTHER-related OS=Arabido... [more]
BB_ARATH9.832e-1456.86E3 ubiquitin-protein ligase BIG BROTHER OS=Arabido... [more]
MBR1_ARATH7.172e-1245.31E3 ubiquitin-protein ligase MBR1 OS=Arabidopsis th... [more]
ZFP1_ORYSJ3.151e-1145.90Probable E3 ubiquitin-protein ligase ZFP1 OS=Oryza... [more]
HIP1_ORYSJ5.931e-1038.89Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza... [more]
MBR2_ARATH1.170e-940.35E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis th... [more]
RHG1A_ARATH3.235e-940.00Probable E3 ubiquitin-protein ligase RHG1A OS=Arab... [more]
R126B_XENLA5.601e-938.24E3 ubiquitin-protein ligase RNF126-B OS=Xenopus la... [more]
RN126_XENTR6.024e-940.68E3 ubiquitin-protein ligase RNF126 OS=Xenopus trop... [more]
RHY1A_ARATH1.138e-835.62Probable E3 ubiquitin-protein ligase RHY1A OS=Arab... [more]
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Expression

Available Analyses

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Download expression dataset for this feature
InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184Ring fingercoord: 153..193
score: 4.8
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 153..194
score: 11
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10no descriptioncoord: 151..197
score: 5.8
NoneNo IPR availablePANTHERPTHR14155FAMILY NOT NAMEDcoord: 15..198
score: 3.4
NoneNo IPR availablePANTHERPTHR14155:SF33 ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEINcoord: 15..198
score: 3.4
NoneNo IPR availablePFAMPF13639zf-RING_2coord: 152..194
score: 2
NoneNo IPR availableSEGsegsegcoord: 45..61
score: NAcoord: 81..123
score
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 104..200
score: 5.1
NoneNo IPR availableSEGsegsegcoord: 28..49
score
NoneNo IPR availableSEGsegsegcoord: 50..60
score
NoneNo IPR availableSEGsegsegcoord: 10..26
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_12661_v1.0_kabuli ID=Ca_12661_v1.0_kabuli; Name=Ca_12661; organism=Cicer arietinum; type=mRNA; length=621bp
ATGGAACGTGAGGAGGGCAAACAATCATCCCCAAAAAATCCATATACTGA
ACTTGAGGAAGTTAGCTTAGATTTTACTCTAGCAATTGGGTTGCAAGAAC
AAGGGAGAACATTTACAAATCTAGCAACAATTGAAAGTGAAAATGATGAT
GATGTAAGTGACTCCTCATTTAGTAATGATGATATTGGTGATGCTGATTT
TTCATTTAGTCAGGAGTTTGAAACCGATCTTCAGTTTCTTGAAGATGAAG
GAAGCTTTATTGATGATGATGACGACGACGGCGAAATGGAAATGGAAGAA
GATGAGATTGATCCAGATGAATTATCTTATGAAGAGTTGATTGAGTTAGG
AGAGCTTATAGGAGATGAGAAGAGAGGATTATCAGCAAATGAAATCTCTT
CCTGCCTAAACTCTTACACTTCCCAAACTGCTGAAAGCAAAAGTGGAATT
GATCGTTGTGTGATTTGTCAGATTGAATATGAAAAAGGTGAAGCCTTAGT
GGCACTTCAATGTGATCACCCTTATCATAAAGATTGCATTAGCAAATGGC
TTCAAATTAAGAAGGTTTGTCCAATATGTAGCAATGAAGTATCAACTCCT
AACAAGGCTAAGAACCCTTGA
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protein sequence of Ca_12661_v1.0_kabuli

>Ca_12661_v1.0_kabuli ID=Ca_12661_v1.0_kabuli; Name=Ca_12661_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=206bp
MEREEGKQSSPKNPYTELEEVSLDFTLAIGLQEQGRTFTNLATIESENDD
DVSDSSFSNDDIGDADFSFSQEFETDLQFLEDEGSFIDDDDDDGEMEMEE
DEIDPDELSYEELIELGELIGDEKRGLSANEISSCLNSYTSQTAESKSGI
DRCVICQIEYEKGEALVALQCDHPYHKDCISKWLQIKKVCPICSNEVSTP
NKAKNP
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mRNA from alignment at Ca5:43935967..43936587+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_12661_v1.0_kabuli ID=Ca_12661_v1.0_kabuli; Name=Ca_12661; organism=Cicer arietinum; type=mRNA; length=621bp; location=Sequence derived from: Ca5:43935967..43936587+ (Cicer arietinum
ATGGAACGTGAGGAGGGCAAACAATCATCCCCAAAAAATCCATATACTGA
ACTTGAGGAAGTTAGCTTAGATTTTACTCTAGCAATTGGGTTGCAAGAAC
AAGGGAGAACATTTACAAATCTAGCAACAATTGAAAGTGAAAATGATGAT
GATGTAAGTGACTCCTCATTTAGTAATGATGATATTGGTGATGCTGATTT
TTCATTTAGTCAGGAGTTTGAAACCGATCTTCAGTTTCTTGAAGATGAAG
GAAGCTTTATTGATGATGATGACGACGACGGCGAAATGGAAATGGAAGAA
GATGAGATTGATCCAGATGAATTATCTTATGAAGAGTTGATTGAGTTAGG
AGAGCTTATAGGAGATGAGAAGAGAGGATTATCAGCAAATGAAATCTCTT
CCTGCCTAAACTCTTACACTTCCCAAACTGCTGAAAGCAAAAGTGGAATT
GATCGTTGTGTGATTTGTCAGATTGAATATGAAAAAGGTGAAGCCTTAGT
GGCACTTCAATGTGATCACCCTTATCATAAAGATTGCATTAGCAAATGGC
TTCAAATTAAGAAGGTTTGTCCAATATGTAGCAATGAAGTATCAACTCCT
AACAAGGCTAAGAACCCTTGA
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Coding sequence (CDS) from alignment at Ca5:43935967..43936587+

>Ca_12661_v1.0_kabuli ID=Ca_12661_v1.0_kabuli; Name=Ca_12661; organism=Cicer arietinum; type=CDS; length=621bp; location=Sequence derived from: Ca5:43935967..43936587+ (Cicer arietinum
ATGGAACGTGAGGAGGGCAAACAATCATCCCCAAAAAATCCATATACTGA
ACTTGAGGAAGTTAGCTTAGATTTTACTCTAGCAATTGGGTTGCAAGAAC
AAGGGAGAACATTTACAAATCTAGCAACAATTGAAAGTGAAAATGATGAT
GATGTAAGTGACTCCTCATTTAGTAATGATGATATTGGTGATGCTGATTT
TTCATTTAGTCAGGAGTTTGAAACCGATCTTCAGTTTCTTGAAGATGAAG
GAAGCTTTATTGATGATGATGACGACGACGGCGAAATGGAAATGGAAGAA
GATGAGATTGATCCAGATGAATTATCTTATGAAGAGTTGATTGAGTTAGG
AGAGCTTATAGGAGATGAGAAGAGAGGATTATCAGCAAATGAAATCTCTT
CCTGCCTAAACTCTTACACTTCCCAAACTGCTGAAAGCAAAAGTGGAATT
GATCGTTGTGTGATTTGTCAGATTGAATATGAAAAAGGTGAAGCCTTAGT
GGCACTTCAATGTGATCACCCTTATCATAAAGATTGCATTAGCAAATGGC
TTCAAATTAAGAAGGTTTGTCCAATATGTAGCAATGAAGTATCAACTCCT
AACAAGGCTAAGAACCCTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding