Ca_03412, Ca_03412_v1.0_kabuli (mRNA) Cicer arietinum

Transcript Overview
NameCa_03412
Unique NameCa_03412_v1.0_kabuli
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length417
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca7chromosomeCa7:715612..716028 -Cicer arietinum CDC Frontier genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum CDC Frontier genome v1.02013-01-01
InterProScan analysis for kabuli C. arietinum unigenes2013-10-24
Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL2013-10-24
BLAST: C. arietinum CDC Frontier (kabuli), Swissprot2019-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
cavuR607Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
cavuR635Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
capvR728Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
capvR743Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ascaL088Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaL228Vigna angularis Jingnong 6 genome v1.1Vigna angularis
catifR583Vicia faba cv. Tiffany genome v1.0Vicia faba
catifR619Vicia faba cv. Tiffany genome v1.0Vicia faba
cavfhR596Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavfhR631Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavrvR603Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavrvR651Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavssR652Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavssR674Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavssR682Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavuaR585Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cavuaR603Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
avjcaL161Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcaL299Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
cacarR541Cicer arietinum
cacarR576Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
jg48588.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vfaba.Tiffany.R1.4g185520.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Va01G100410.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-XM_022784145.1Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vfaba.Hedin2.R1.4g241920.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
LR48_mrnaVigan01g324000Vigna angularis Jingnong 6 genome v1.1Vigna angularis
evm.model.Chr03.1090Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigun03g442000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_03412-CDS1Ca_03412-CDS1Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_03412_v1.0_kabuliCa_03412_v1.0_kabuliCicer arietinumpolypeptide


Homology
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BLAST of Ca_03412 vs. TrEMBL
Match: G7JKI2_MEDTR (Putative uncharacterized protein OS=Medicago truncatula GN=MTR_4g133010 PE=4 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 2.544e-33
Identity = 88/147 (59.86%), Postives = 105/147 (71.43%), Query Frame = 1 
Query:    1 MKQSKKKVHPCSTQFRGGGSLISELAQDSLCLIERKTKN--RVEEVIDEELTSDCSLITTSNICGTSMKKKRVRFNLPHTVIFYQPDDPYCKXXXXXXXTSF--------SSHKCREEYSFDTTEEPFLRLAVDVLPHVIFVSSKVS 411
            +KQS+K+VHPCST+F  GGSLISELAQDSLCL+E KTKN    EE+ DE LTS+CSLI T+N+ G S +KKRV F LPHTVIFY+P++PYCK        S           +     YSF+T EEP LRLAVD+LP+V FVSSKVS
Sbjct:   58 LKQSRKRVHPCSTRF-CGGSLISELAQDSLCLLE-KTKNCREKEELADEGLTSNCSLI-TNNLFGKS-QKKRVNFKLPHTVIFYKPEEPYCKEEEEEEEASLKDYYNINSEEYSFSSLYSFETAEEPSLRLAVDILPYV-FVSSKVS 199
[Close]
BLAST of Ca_03412 vs. TrEMBL
Match: K7MJC0_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.005e-13
Identity = 64/145 (44.14%), Postives = 81/145 (55.86%), Query Frame = 1 
Query:    7 QSKKKVHPCSTQFRGGGSLISELAQDSLCLIERKTKNRVEEVIDEELTSDCSLITTSNICGTSMKKKRVRFNLPHTVIFYQPDDP---------YC-KXXXXXXXTSFSSHKCREEYSFDTT-EEPFLRLAVDVLPHVIFVSSKV 408
            +SKKKVHPC +Q     SLI+E A+DSLCL     +N       EE+ S  S+  + +       +K+V F LPH VIFY PD+P         YC          SF S  CR EYSFD++ EE  ++LAVDVLPHV  VSSK+
Sbjct:   79 KSKKKVHPCVSQVPR--SLIAE-AKDSLCLDRPMNRN-------EEMLSSTSIGRSIS----EKSQKKVSFKLPHNVIFYSPDEPRSPEEKEPYYCYYYNSSESEDSFYSSICR-EYSFDSSAEETLIKLAVDVLPHV-SVSSKI 207
The following BLAST results are available for this feature:
BLAST of Ca_03412 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
G7JKI2_MEDTR2.544e-3359.86Putative uncharacterized protein OS=Medicago trunc... [more]
K7MJC0_SOYBN1.005e-1344.14Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
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BLAST of Ca_03412 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 91..97
score
NoneNo IPR availableSEGsegsegcoord: 43..49
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_03412_v1.0_kabuli ID=Ca_03412_v1.0_kabuli; Name=Ca_03412; organism=Cicer arietinum; type=mRNA; length=417bp
ATGAAACAGTCAAAGAAAAAGGTGCATCCTTGTTCAACACAGTTCCGTGG
TGGTGGATCTTTGATAAGTGAATTAGCTCAAGATAGTTTATGCTTAATAG
AAAGAAAAACTAAGAACCGTGTTGAAGAAGTTATTGATGAAGAATTAACT
TCAGATTGTTCATTGATTACAACAAGTAACATATGTGGAACATCAATGAA
GAAGAAGAGAGTGAGGTTTAATCTTCCTCACACTGTTATATTCTACCAAC
CAGATGACCCTTATTGCAAAGAAGAAGAAGAAGAAGAAGAAACATCGTTT
TCCTCACATAAGTGCAGAGAAGAATATTCATTTGACACAACAGAGGAACC
TTTTTTAAGATTAGCAGTGGATGTTCTACCTCATGTGATCTTTGTCTCTT
CCAAAGTTTCAAAGTAA
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protein sequence of Ca_03412_v1.0_kabuli

>Ca_03412_v1.0_kabuli ID=Ca_03412_v1.0_kabuli; Name=Ca_03412_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=138bp
MKQSKKKVHPCSTQFRGGGSLISELAQDSLCLIERKTKNRVEEVIDEELT
SDCSLITTSNICGTSMKKKRVRFNLPHTVIFYQPDDPYCKEEEEEEETSF
SSHKCREEYSFDTTEEPFLRLAVDVLPHVIFVSSKVSK
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mRNA from alignment at Ca7:715612..716028-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_03412_v1.0_kabuli ID=Ca_03412_v1.0_kabuli; Name=Ca_03412; organism=Cicer arietinum; type=mRNA; length=417bp; location=Sequence derived from: Ca7:715612..716028- (Cicer arietinum
ATGAAACAGTCAAAGAAAAAGGTGCATCCTTGTTCAACACAGTTCCGTGG
TGGTGGATCTTTGATAAGTGAATTAGCTCAAGATAGTTTATGCTTAATAG
AAAGAAAAACTAAGAACCGTGTTGAAGAAGTTATTGATGAAGAATTAACT
TCAGATTGTTCATTGATTACAACAAGTAACATATGTGGAACATCAATGAA
GAAGAAGAGAGTGAGGTTTAATCTTCCTCACACTGTTATATTCTACCAAC
CAGATGACCCTTATTGCAAAGAAGAAGAAGAAGAAGAAGAAACATCGTTT
TCCTCACATAAGTGCAGAGAAGAATATTCATTTGACACAACAGAGGAACC
TTTTTTAAGATTAGCAGTGGATGTTCTACCTCATGTGATCTTTGTCTCTT
CCAAAGTTTCAAAGTAA
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Coding sequence (CDS) from alignment at Ca7:715612..716028-

>Ca_03412_v1.0_kabuli ID=Ca_03412_v1.0_kabuli; Name=Ca_03412; organism=Cicer arietinum; type=CDS; length=417bp; location=Sequence derived from: Ca7:715612..716028- (Cicer arietinum
ATGAAACAGTCAAAGAAAAAGGTGCATCCTTGTTCAACACAGTTCCGTGG
TGGTGGATCTTTGATAAGTGAATTAGCTCAAGATAGTTTATGCTTAATAG
AAAGAAAAACTAAGAACCGTGTTGAAGAAGTTATTGATGAAGAATTAACT
TCAGATTGTTCATTGATTACAACAAGTAACATATGTGGAACATCAATGAA
GAAGAAGAGAGTGAGGTTTAATCTTCCTCACACTGTTATATTCTACCAAC
CAGATGACCCTTATTGCAAAGAAGAAGAAGAAGAAGAAGAAACATCGTTT
TCCTCACATAAGTGCAGAGAAGAATATTCATTTGACACAACAGAGGAACC
TTTTTTAAGATTAGCAGTGGATGTTCTACCTCATGTGATCTTTGTCTCTT
CCAAAGTTTCAAAGTAA
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