Ca_16073, Ca_16073_v1.0_kabuli (mRNA) Cicer arietinum
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Ca_16073 vs. TrEMBL
Match: I3STT4_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1) HSP 1 Score: 296.975 bits (759), Expect = 2.916e-78 Identity = 166/236 (70.34%), Postives = 183/236 (77.54%), Query Frame = 1 Query: 1 MEAEKANAIQTHNLLPAISKTLRIFEIFIVXXXXXXXXXXXXXAVSISTAYLRNLAANPLFIFAVSNAIIAALLAQSGRFSNQNSDEHAGAGKLYREFMNSRIAVSDRD-QPPS---------VEPPPVTAEVICHDKEVISETVP-----DRDAGVRSEFASYRRSQSEKWKGEAGKMQRRKQLRRSETEKLRETAKENLYPQDKLSNEEFQRAIDAFIAKQMRFLREESSAIVV 663 ME K NAI+TH AISKT+RIFE+ IV AVSIS YLR LAANPLFIFAVSNAIIAAL AQSGRFS++NS++H+GAGKLYRE MN RIAVSDRD QPPS V+ PPVTAEV C DKEVISETVP DR+ GV S+F +YRR+QSEKWKGEAGKM++RKQLRRSET KL ET+KENLYPQDKLSNEEFQR IDAFI KQM+FLREESS IVV Sbjct: 1 MELLKPNAIRTH--FAAISKTIRIFELCIVFLILSWTLTRLPLAVSISAEYLRKLAANPLFIFAVSNAIIAALFAQSGRFSDENSEDHSGAGKLYRELMNCRIAVSDRDIQPPSSTVDPPSATVDLPPVTAEVTCQDKEVISETVPAPVIPDREIGVYSDFVNYRRTQSEKWKGEAGKMKQRKQLRRSETAKLLETSKENLYPQDKLSNEEFQRPIDAFIGKQMKFLREESSPIVV 234
BLAST of Ca_16073 vs. TrEMBL
Match: I1MNB8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 204.527 bits (519), Expect = 1.970e-50 Identity = 128/229 (55.90%), Postives = 153/229 (66.81%), Query Frame = 1 Query: 1 MEAEKANAIQTHN--LLPAISKTLRIFEIFIVXXXXXXXXXXXXXAVSISTAYLRNL---AANPLFIFAVSNAIIAALLAQSGRFSNQNSDEHAGAGKLYREFMNSRIAVSDRDQPPSVEPPPVTAEVICHDKEVISETVPDRDAGVRSEFASYRRSQSEKWKGEA-GKMQRRKQLRRSETEKLRETAKENLYPQDKLSNEEFQRAIDAFIAKQMRFLREESSAIVVHS 669 ++AEKANAI+ HN + SK LRI E+ +V A+++S +LR L AA+PL +FAVSNAIIAALLAQS R S +S A LYREF+++R AV++ PPS P P E HDK+VI ETV DA A YRRSQSEK K +A GK+ RRKQLRRSETEK E E LYPQD+LSNEEFQRAI+AFIAKQ+RFLREESSAIVV + Sbjct: 6 LKAEKANAIRRHNNDIFAVFSKALRILELCLVLVLLSWILTRLPFALALSAEFLRRLIAFAASPLVVFAVSNAIIAALLAQSRRLSAPHS-----ADSLYREFLHTRTAVTEPHAPPSPPPSPPPPEPEFHDKQVIVETV--HDAPSAGAAAKYRRSQSEKIKVDAAGKLPRRKQLRRSETEKRGECLPEILYPQDELSNEEFQRAIEAFIAKQLRFLREESSAIVVQN 227
BLAST of Ca_16073 vs. TrEMBL
Match: I1JCM9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 199.134 bits (505), Expect = 8.276e-49 Identity = 124/231 (53.68%), Postives = 156/231 (67.53%), Query Frame = 1 Query: 1 MEAEKANAIQTHN---LLPAISKTLRIFEIFIVXXXXXXXXXXXXXAVSISTAYLRNL---AANPLFIFAVSNAIIAALLAQSGRFSNQNSDEHAGAGKLYREFMNSRIAVSDRDQPPSVEPPPVTAEVICHDKEVISETVPDRDAGVRSEFASYRRSQSEKWKGEA-GKMQRRKQLRRSETEKLRETAKENLYPQDKLSNEEFQRAIDAFIAKQMRFLR-EESSAIVVHS 669 ++AEKANAI HN +L +SK LRI E+ + A+++S +LR L AA+PLF+FAVSNAIIAALLAQS R S+ +S A LYREF+ +R AVS+ PPS PP E + HDK++I++ V D + + A YRRSQSEK K +A GK RRKQL RSETEK +++ E LYPQD+LSNEEFQRAI+AFIAKQ+RFLR EESSAIVV + Sbjct: 6 LKAEKANAIPRHNNNNILAFVSKALRILELCLALLLLSWILTRLPFALALSAEFLRRLFAFAASPLFVFAVSNAIIAALLAQSRRLSSPHS-----ADALYREFLQTRTAVSEPHAPPSPTPP----EPVFHDKQIIADMVQDTPSADAAAAAKYRRSQSEKIKVDAAGKPPRRKQLLRSETEKRSDSSPEILYPQDELSNEEFQRAIEAFIAKQLRFLREEESSAIVVQN 227
BLAST of Ca_16073 vs. TrEMBL
Match: K7K4C3_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 6.817e-27 Identity = 91/216 (42.13%), Postives = 114/216 (52.78%), Query Frame = 1 Query: 25 IQTHNLLPAISKTLRIFEIFIVXXXXXXXXXXXXXAVSISTAYLRNLAANPLFIFAVSNAIIAALLAQSGRFSNQNSDEHAGAGKLYREFMNSRIAVSDRDQPPSVEPPPVTAEVICHDKEVISETVPDRDAG--VRSEFAS-YRRSQSEKW--KGEAGKMQRRKQLRRSETEKLRETAKENLYPQDKLSNEEFQRAIDAFIAKQMRFLREESSAI 657 ++ N++ +++KTLRI E+ I A+ IS YLR+ PLF+FAVSNAIIAA+LAQS RF NS + VI + IS+T D D+G + S F YRRSQSEK K E R++LRRSETEK RE + YPQDKLSNEEF+R I+AFI QMR LRE+S AI Sbjct: 49 VEKMNIINSVAKTLRILELCIALFFLSWFLTRLPFALQISADYLRS----PLFVFAVSNAIIAAVLAQSRRFDQSNS----------------------------------ASPVIEAEHHQISDTCTDNDSGAAIDSNFGKFYRRSQSEKLTEKSEERNDTARRELRRSETEKAREKS----YPQDKLSNEEFRRTIEAFIENQMRLLREDSLAI 222
BLAST of Ca_16073 vs. TrEMBL
Match: A5BEA3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g02160 PE=4 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 2.193e-25 Identity = 90/245 (36.73%), Postives = 131/245 (53.47%), Query Frame = 1 Query: 1 MEAEKANAIQTHNLLPAISKTLRIFEIFIVXXXXXXXXXXXXXAVSISTAYLRNLA---ANPLFIFAVSNAIIAALLAQSGRFSNQNSDEHAGAGKLYREFM----NSRIAVSDRDQPPSVEPPPVTAE---VICH--------DKEVISETVPDRDAGVRSEFASYRRSQSEKWKGEAGKMQRRKQLRRSETEKLRETA------KENLYPQDKLSNEEFQRAIDAFIAKQMRFLREESSAIVV 663 ++AEKANA+ + L ++K R E+F+V A+ IS Y R ++ A+ LF+F NAII LL +S +FS++N H +Y EF+ N+R D S EP V E +IC +K V + T RD+ V+ YRRSQSEK + + RR L+RS+TEK ++ + YP+D+LSNE+FQR I+AFIA+++RF R+ES AIV+ Sbjct: 9 VKAEKANAMLKYRRLRNVTKLFRFAELFLVLILFFWIFTHLPFAIQISGEYFRKISTVIASHLFVFLFCNAIIVILLFKSSQFSDRNLPVHNAETDIYEEFVKKSENNRPNSQSEDLSLSQEPEVVVYEDKQMICAANTLRPTCEKVVPTVTDSKRDSYVKV----YRRSQSEKLNRDRSEKSRRI-LQRSDTEKCQQIVISGDDPAKTWYPEDELSNEDFQRTIEAFIARELRFRRQESLAIVL 248
BLAST of Ca_16073 vs. TrEMBL
Match: E5F728_9BRAS (Putative uncharacterized protein OS=Eutrema parvulum PE=4 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 7.055e-24 Identity = 83/231 (35.93%), Postives = 126/231 (54.55%), Query Frame = 1 Query: 1 MEAEKANAIQTHNLLPAISKTLRIFEIFIVXXXXXXXXXXXXXAVSISTAYLRNLA---ANPLFIFAVSNAIIAALLAQSGRFSNQNSDEHAGAG-KLYREFMNSRIAVSDRDQPPSVEPPPVTAEVICHDKEVI-SETVPDRDAGVRSEFAS---YRRSQSEKWKGEAGKMQRRKQLRRSETEKLRETAKENLYPQDKLSNEEFQRAIDAFIAKQMRFLREESSAIVVHS 669 ++AEKA A++ +N + + R E+ + AV I +LR LA + PLF+F + N I+ LL +S S+Q + A A ++Y+ F++S V +R + E++ DK+VI +ET D R E S Y RS+S+ + + ++ LRRSETEK R + K+ YP+D LSNEEFQ+ I+AFIAKQ+ F R+ES A+VVH+ Sbjct: 6 VKAEKAKALRRYNRFRRVGRFFRAAEVCVAVLFLFWTFTRLPFAVQIFGEFLRRLAGVISTPLFVFLLGNCIVVVLLTKS---SDQTTGGSANAETEVYQAFLSS---VENRSNEGLAD------EIVYDDKQVIVTETNIPHDEDDRVEVDSHKVYGRSKSDVSANDRRVVIKKPCLRRSETEKCRNSEKDKNYPEDNLSNEEFQKTIEAFIAKQLMFRRQESLAVVVHN 224
BLAST of Ca_16073 vs. TrEMBL
Match: F6I0L7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0038g04550 PE=4 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 5.972e-23 Identity = 83/227 (36.56%), Postives = 118/227 (51.98%), Query Frame = 1 Query: 1 MEAEKANAIQTHNLLPAISKTLRIFEIFIVXXXXXXXXXXXXXAVSISTAYLRNLAA---NPLFIFAVSNAIIAALLAQSGRFSNQNSDEHAGAGKLYREFMNSRIAVSDRDQPPSVEPPPVTAEVICHDKEVISETVPDRDAGVRSEFASYRRSQSEK-WKGEAGKMQRRKQLRRSETEKLRETAK--ENLYPQDKLSNEEFQRAIDAFIAKQMRFLREESSAIVV 663 ++ EKANAI + L I+ R+ E+ +V A+ +S Y R+L+ +P F+F V NAII L A+SG+FS QN E LY E + ++ + +E T E + V+ +T +A V YRR+QSE K + K+ R +LRRS TEK R+ E Y +D +SNEEF+RA++AFIA+Q RF REE S VV Sbjct: 9 IKVEKANAILRYRQLRKITNLFRVIEVCLVLILVSKFSFQLPFAIKVSGEYFRDLSVTLISPRFVFVVGNAIIIILFAKSGQFSGQNQAEKYDETHLYNEIV-------EKSEKGRMEISTSTEETV-----VMVDTYTTHEAKV------YRRTQSENPIKDNSDKICR--ELRRSVTEKCRKNTDSCEKNYSEDDMSNEEFRRAVEAFIARQQRFRREEESMAVV 215
BLAST of Ca_16073 vs. TrEMBL
Match: B9S6C5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0535010 PE=4 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 5.972e-23 Identity = 86/254 (33.86%), Postives = 129/254 (50.79%), Query Frame = 1 Query: 1 MEAEKANAIQTHNLLPAISKTLRIFEIFIVXXXXXXXXXXXXXAVSISTAYLR--NLAANPLFIFAVSNAIIAALLAQSGRFSNQNSDEHAGAGKLYREFMNSR----------IAVSDRDQPPSVEPPPVTAEVICHDKEVI-------SETVPDRD-----AGVRSEFAS-------YRRSQSEKWKGE-AGKMQRRKQLRRSETEKLR-ETAKENLYPQDKLSNEEFQRAIDAFIAKQMRFLREESSAIVV 663 ++A+KA AI ++ L +++ R+ E + V T +LR + A+P+F+F + NAII L+ +SGRFS +N +LY E + + + S+ P PPP T E+ DKE+I ++T + D G+ S+ S YRRS+S K + K+ +K LRRSETEK R E E L +D+LS+EEFQRA+D FIAK +R R+ES +IV+ Sbjct: 9 VKAQKAGAILWYSHLRSLTNLFRVIEFGLALLLLSWIFNRLPFLV---TVFLRVAGVIASPIFVFMLCNAIIVTLIVKSGRFSGENPAADNAETELYEELLKNNGNHPCPKSLSSSSSEIPSPSPQSPPPATEEIEYQDKEIIISKINAVAKTASEGDDCFGEMGLSSDSESDSNNPRVYRRSKSMKLESSHPEKVTGKKLLRRSETEKCRNEVISEGLCLEDELSDEEFQRAVDEFIAKHLRLRRQESMSIVL 259
BLAST of Ca_16073 vs. TrEMBL
Match: R0GMG9_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10027006mg PE=4 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 2.964e-22 Identity = 79/242 (32.64%), Postives = 126/242 (52.07%), Query Frame = 1 Query: 1 MEAEKANAIQTHNLLPAISKTLRIFEIFIVXXXXXXXXXXXXXAVSISTAYLRNLAA---NPLFIFAVSNAIIAALLAQSGRFSNQNSDEHAGAGKLYREFMNSRIAVSDRDQPPSVEPPPVTAEVICHDKEVI--------SETVPDRDAGVRSEFAS---YRRSQSEKWKGEAGKMQRRKQLRRSETEKL-----RETAKENLYPQDKLSNEEFQRAIDAFIAKQMRFLREESSAIVVHS 669 ++AEKA A++ N I + R E+ + AV IS A+LR +AA PLF+F + N+I+ LL +S + + ++Y F+ S V +R +P + + E++ DKEVI E +PD + + AS Y RS+S+ + + ++ L+RSET+K ++ +++ YP+D LSNEEFQ+ I+AFIAKQ F R+ES A+VVH+ Sbjct: 7 VKAEKAKALRRFNRFRRIGRFFRAAEVCVALLLLFWTFTRLPFAVQISGAFLRRIAAVVSTPLFVFLLGNSIVLVLLTKSSDQKTTTAAATSPETEIYEAFVRS---VENRSKPADED---MVDEIVYDDKEVIVTDLNPKAEENIPDAEVDSDAAAASKKVYGRSKSDV-SAKQSRPNTKRCLQRSETDKCIWEIEKQRDEDDNYPEDDLSNEEFQKTIEAFIAKQRLFRRQESLAVVVHN 241
BLAST of Ca_16073 vs. TrEMBL
Match: A5BRH5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001593 PE=4 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 3.871e-22 Identity = 84/231 (36.36%), Postives = 113/231 (48.92%), Query Frame = 1 Query: 1 MEAEKANAIQTHNLLPAISKTLRIFEIFIVXXXXXXXXXXXXXAVSISTAYLRNLAA---NPLFIFAVSNAIIAALLAQSGRFSNQNSDEHAGAGKLYREFMN----SRIAVSDRDQPPSVEPPPVTAEVICHDKEVISETVPDRDAGVRSEFASYRRSQSEK-WKGEAGKMQRRKQLRRSETEKLRETAK--ENLYPQDKLSNEEFQRAIDAFIAKQMRFLREESSAIVV 663 ++ EKANAI + L I+ R+ E+ +V A+ +S Y R+L+ +P F+F V NAII L A+SG+FS QN E LY E + SR+ +S + ETV D E YRR+QSE K + K R +LRRS TEK R+ E Y +D +SNEEF+RA++AFIA+Q RF REE S VV Sbjct: 9 IKVEKANAILRYRQLRKITNLFRVIEVCLVLILVSKFSFQLPFAIKVSGEYFRDLSVTLISPRFVFVVGNAIIIILFAKSGQFSGQNQAEKYDETHLYNEIVEKSEKSRMEISTSTE----------------------ETVVMVDXYTTHEAKVYRRTQSENPIKDNSDKXCR--ELRRSVTEKCRKXTDSCEKNYSEDDMSNEEFRRAVEAFIARQQRFRREEESMAVV 215 The following BLAST results are available for this feature:
BLAST of Ca_16073 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL) Total hits: 25
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BLAST of Ca_16073 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot) Total hits: 0
Expression
Available Analyses Select an Expression Analysis Select a property to group and sort biological samples Select a property to color biological samples Hover the mouse over a column in the graph to view more information about that biological sample. You can click and drag to rearrange groups along the x-axis. You can also click and drag to move the legend. InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
Sequences
The
following sequences are available for this feature:
mRNA sequence >Ca_16073_v1.0_kabuli ID=Ca_16073_v1.0_kabuli; Name=Ca_16073; organism=Cicer arietinum; type=mRNA; length=678bpback to top protein sequence of Ca_16073_v1.0_kabuli >Ca_16073_v1.0_kabuli ID=Ca_16073_v1.0_kabuli; Name=Ca_16073_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=225bpback to top mRNA from alignment at Ca7:14005550..14006227+ Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.>Ca_16073_v1.0_kabuli ID=Ca_16073_v1.0_kabuli; Name=Ca_16073; organism=Cicer arietinum; type=mRNA; length=678bp; location=Sequence derived from: Ca7:14005550..14006227+ (Cicer arietinumback to top Coding sequence (CDS) from alignment at Ca7:14005550..14006227+ >Ca_16073_v1.0_kabuli ID=Ca_16073_v1.0_kabuli; Name=Ca_16073; organism=Cicer arietinum; type=CDS; length=678bp; location=Sequence derived from: Ca7:14005550..14006227+ (Cicer arietinumback to top |