Ca_17896, Ca_17896_v1.0_kabuli (mRNA) Cicer arietinum
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Ca_17896 vs. TrEMBL
Match: G8A0M5_MEDTR (Putative uncharacterized protein OS=Medicago truncatula GN=MTR_104s0006 PE=4 SV=1) HSP 1 Score: 372.859 bits (956), Expect = 7.656e-101 Identity = 176/250 (70.40%), Postives = 211/250 (84.40%), Query Frame = 1 Query: 1 MGNNLKGINRLDNINFPSYHEQLGSNGAIDVTKIEHKVMNGHTGELFDIVKWNLSYTIDKSKCILDLRRISNKEGKIDSVSFQLSDDSGDMYSDGNIWFVIAKDSDFLASTSPAFVLNGGFKNCRQKNKKTFYASSYVMETCAYLYGSGSKVGFLVVEEKRKSGDNEKPCKVTIAHYYAISSGNIFSQNKIDIGLSMVVRIQPSNEIGLDITIEGPIQHPSAALHYMFHEVMKTGIWKPTICPHCASIKR 750 MGNN +G+NRL+ +FPSYHEQLGS G IDVTKIEH+ +NGHTGE+FDI KWN SYTID SKCILDLRR+S+K+GK++S+SFQ+ D+ MYSDGNIWF I+KD+ FL ST+P +LNGGFKNC+Q++ T AS YVMETC YLYGSGS+ GFLV+EE RKSG+ EKPCKVT+AHYYA+S N+FS KIDIGLSM+V IQPS+E+GLDIT+ GP QHP+ ALH MFHEV+KTGIWKPT C HCAS+ R Sbjct: 1 MGNN-QGVNRLNKGHFPSYHEQLGSYGTIDVTKIEHEAINGHTGEVFDIAKWNTSYTIDSSKCILDLRRVSSKDGKVNSISFQIGDE---MYSDGNIWFAISKDTSFLGSTTPPLLLNGGFKNCKQRSNSTTNASGYVMETCVYLYGSGSRRGFLVLEEMRKSGNAEKPCKVTVAHYYAVSIRNLFSY-KIDIGLSMIVMIQPSSEVGLDITVHGPSQHPAKALHSMFHEVLKTGIWKPTKCSHCASMIR 245
BLAST of Ca_17896 vs. TrEMBL
Match: G8A0N2_MEDTR (Putative uncharacterized protein OS=Medicago truncatula GN=MTR_104s0014 PE=4 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 4.897e-31 Identity = 84/198 (42.42%), Postives = 114/198 (57.58%), Query Frame = 1 Query: 154 WNLSYTIDKSKCILDLRRISNKEGKIDSVSFQLSDDSGDMYSDGNIWFVIAKDSDFLA---STSPAFVLNGGFKNCRQKNKKTFYASSYVMETCAYLYGSGSKVGFLVVEEKRKSGDNEKPCKVTIAHYYAISSGNIFSQNKIDIGLSMVVRIQPSNEIGLDITIEGPIQHPSAALHYMFHEVMKTGIWKPTICPHCA 738 W SYT S C LDL + ++ GKI V +L DD + G ++ SDFL ++ F + FK K+TF + +M T + YG K G +VVE K++S +++ T+ HYYAIS GN+F+QNKIDIGLSMVV SN ++ T++GP QHPSAAL YMF +V ++G WK T C HCA Sbjct: 18 WTTSYTTGDSTCTLDLEKYVDEHGKIREVCLELEDDI--CFGGGIQLWIKRVQSDFLHFSYNSDQRFQVITTFKF-----KETFNSHGCIM-TWVFCYGRAGKGGLIVVEGKKRSKEDKYLYTTTVTHYYAISQGNMFTQNKIDIGLSMVVNFNVSNG-SINCTVKGPDQHPSAALFYMFEQVCRSGNWKLTACFHCA 206
BLAST of Ca_17896 vs. TrEMBL
Match: K7K3V9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.380e-25 Identity = 91/272 (33.46%), Postives = 136/272 (50.00%), Query Frame = 1 Query: 10 NLKGINRLDNINFPSYHEQLGSNGAIDVTKIEHKVM-NGHTGELFDIVKWNLSYTIDKSKCILDLRRI----SNKEGKID----SVSFQLSDDSGDMYSDGNIWFVIAKDSDFLASTSPAFVLNG---------GFKNCRQKNKKTFYASSYVMETCAYLYGS-GSKVGFLVVEEKRKSGDNEKPCKVTIAHYYAISSGNIFSQNKIDIGLSMVVRIQPSNEI-----GLDITIEGPIQHPSAALHYMFHEVMKTGIWKPTICPHCASIKRK 753 N+ G R+ YH QLG +I + + E K NG + KW +SY ++ C + + S++E KI+ + +++ + YS G V ++ L F N G + T +S V T YGS G++ G V E K+K +NEKP TIAHYYA + N+F++ ID+GLSM+V+I+ SN LD T++GP+QHPS+A+ YM EV +TG+W P CPHCA+I+R+ Sbjct: 28 NVPGSFRILGNGASPYHFQLGKLASISMKEGERKWEDNGKRSQ-----KWEVSYNVEGLTCTFSITKSTGINSDEELKIEMEDNTCREKINRHAIKQYSSGFTQIVGRAEAGLLVEDMICFHANSTKDVRGYVKGASMYVPYTRNTTNSSGGVTSTTICPYGSSGTRKGLYVTEWKKKK-ENEKPYMGTIAHYYANNGENLFTRG-IDVGLSMMVKIRVSNGALFGVDELDFTVDGPVQHPSSAILYMIKEVTRTGMWTPRACPHCANIQRQ 292
BLAST of Ca_17896 vs. TrEMBL
Match: I1J7Z3_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.380e-25 Identity = 91/272 (33.46%), Postives = 136/272 (50.00%), Query Frame = 1 Query: 10 NLKGINRLDNINFPSYHEQLGSNGAIDVTKIEHKVM-NGHTGELFDIVKWNLSYTIDKSKCILDLRRI----SNKEGKID----SVSFQLSDDSGDMYSDGNIWFVIAKDSDFLASTSPAFVLNG---------GFKNCRQKNKKTFYASSYVMETCAYLYGS-GSKVGFLVVEEKRKSGDNEKPCKVTIAHYYAISSGNIFSQNKIDIGLSMVVRIQPSNEI-----GLDITIEGPIQHPSAALHYMFHEVMKTGIWKPTICPHCASIKRK 753 N+ G R+ YH QLG +I + + E K NG + KW +SY ++ C + + S++E KI+ + +++ + YS G V ++ L F N G + T +S V T YGS G++ G V E K+K +NEKP TIAHYYA + N+F++ ID+GLSM+V+I+ SN LD T++GP+QHPS+A+ YM EV +TG+W P CPHCA+I+R+ Sbjct: 3 NVPGSFRILGNGASPYHFQLGKLASISMKEGERKWEDNGKRSQ-----KWEVSYNVEGLTCTFSITKSTGINSDEELKIEMEDNTCREKINRHAIKQYSSGFTQIVGRAEAGLLVEDMICFHANSTKDVRGYVKGASMYVPYTRNTTNSSGGVTSTTICPYGSSGTRKGLYVTEWKKKK-ENEKPYMGTIAHYYANNGENLFTRG-IDVGLSMMVKIRVSNGALFGVDELDFTVDGPVQHPSSAILYMIKEVTRTGMWTPRACPHCANIQRQ 267
BLAST of Ca_17896 vs. TrEMBL
Match: K7LEU2_SOYBN (Uncharacterized protein (Fragment) OS=Glycine max PE=4 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 3.074e-25 Identity = 80/210 (38.10%), Postives = 112/210 (53.33%), Query Frame = 1 Query: 154 WNLSYTIDKSKCILDL-RRISNKEGKIDSVSFQLSDDSGDMYSDGN-----------IWFVIAKDSDFLASTSPAFVLNGGFKNCRQKNKKTFYASSYVMETCAYLYGSGSKVGFLVVEEKRK-SGDNEKPCKVTIAHYYAISSG-NIFSQNKIDIGLSMVVRIQPSNEIGLDITIEGPIQHPSAALHYMFHEVMKTGIWKPTICPHCAS 741 W +SY + + C + L RR+ N G I ++ L +S D N + V KD D L S A N K C Q K + Y V +T +LYG G K G +V++ S +E PC VT+ HY+A S G N +S++K D GLS++ RI PS + I +EGP QHPS+AL Y+F +V TG+W P++CPHCA+ Sbjct: 60 WTMSYKVGITDCEMQLWRRMEN--GDIKALLLLLHSESTCYKLDPNNHVSVLDFRLDVTTVDGKD-DLLFVDSKATYRNN--KLCFQLTK-SIYGDGSVTQTSVFLYGMGHKAGLVVLQRHYNGSAQDENPCAVTLTHYHATSPGINDYSKSKADFGLSVIARIVPSKG-NVVIDVEGPKQHPSSALFYLFDQVRSTGVWNPSMCPHCAA 262
BLAST of Ca_17896 vs. TrEMBL
Match: I1L4K8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 3.074e-25 Identity = 80/210 (38.10%), Postives = 112/210 (53.33%), Query Frame = 1 Query: 154 WNLSYTIDKSKCILDL-RRISNKEGKIDSVSFQLSDDSGDMYSDGN-----------IWFVIAKDSDFLASTSPAFVLNGGFKNCRQKNKKTFYASSYVMETCAYLYGSGSKVGFLVVEEKRK-SGDNEKPCKVTIAHYYAISSG-NIFSQNKIDIGLSMVVRIQPSNEIGLDITIEGPIQHPSAALHYMFHEVMKTGIWKPTICPHCAS 741 W +SY + + C + L RR+ N G I ++ L +S D N + V KD D L S A N K C Q K + Y V +T +LYG G K G +V++ S +E PC VT+ HY+A S G N +S++K D GLS++ RI PS + I +EGP QHPS+AL Y+F +V TG+W P++CPHCA+ Sbjct: 43 WTMSYKVGITDCEMQLWRRMEN--GDIKALLLLLHSESTCYKLDPNNHVSVLDFRLDVTTVDGKD-DLLFVDSKATYRNN--KLCFQLTK-SIYGDGSVTQTSVFLYGMGHKAGLVVLQRHYNGSAQDENPCAVTLTHYHATSPGINDYSKSKADFGLSVIARIVPSKG-NVVIDVEGPKQHPSSALFYLFDQVRSTGVWNPSMCPHCAA 245
BLAST of Ca_17896 vs. TrEMBL
Match: I3S8W7_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 1.993e-24 Identity = 61/120 (50.83%), Postives = 81/120 (67.50%), Query Frame = 1 Query: 379 KNKKTFYASSYVMETCAYLYGSGSKVGFLVVEEKRKSGDNEKPCKVTIAHYYAISSGNIFSQNKIDIGLSMVVRIQPSNEIGLDITIEGPIQHPSAALHYMFHEVMKTGIWKPTICPHCA 738 K K+TF + +M T + YG K G +VVE K++S +++ T+ HYYAIS GN+F+QNKIDIGLSMVV SN ++ T++GP QHPSAAL YMF +V ++G WK T C HCA Sbjct: 35 KFKETFNSHGCIM-TWVFCYGRAGKGGLIVVEGKKRSKEDKYLYTTTVTHYYAISQGNMFTQNKIDIGLSMVVNFNVSNG-SINCTVKGPDQHPSAALFYMFEQVCRSGNWKLTACFHCA 152
BLAST of Ca_17896 vs. TrEMBL
Match: K7L0F5_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 3.181e-22 Identity = 74/198 (37.37%), Postives = 112/198 (56.57%), Query Frame = 1 Query: 154 WNLSYTIDKSKCILDLRRISNKEGKIDSVSFQLSDDSGDMYSDGNIWFVIAKDSDFLASTSPAFVLNGGFKNCRQKNKKTFYASSYVMETCAYLYGSGSKVGFLVVEE-KRKSGDNEKPCKV-TIAHYYAISSGNIFS-QNKIDIGLSMVVRIQPSNEIGLDITIEGPIQHPSAALHYMFHEVMKTGIWKPTICPHCA 738 W ++YT+ C L L R +K ++ VSF L D G + + ++ FL S + K +T A V++T YL G+ ++ L+V E K+ S D+++ V T+AHY+A S G F+ +++ IGLS+V +++ SN LDIT+EGP QHP++AL MF +V +TGIWKPT+CPHCA Sbjct: 21 WYVTYTVHGQTCSLCLVRDYDKHDNLNKVSFILLD-LGLGFRTLCLHIETTSETGFLRINSTQSIP-------WTKTNRTVDARDDVVDTKVYLDGNANQRNDLIVLECKKNSTDHDEETNVVTVAHYFADSRGRAFNIDDELGIGLSVVAKVRVSNG-QLDITVEGPEQHPASALFCMFDQVNRTGIWKPTMCPHCA 209
BLAST of Ca_17896 vs. TrEMBL
Match: G8A0M6_MEDTR (Putative uncharacterized protein OS=Medicago truncatula GN=MTR_104s0007 PE=4 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 6.209e-18 Identity = 75/225 (33.33%), Postives = 114/225 (50.67%), Query Frame = 1 Query: 43 NFPSYHE-QLGSNGAIDVTKIEHKVMNGHTGELFDIVKWNLSYTIDKSKCILDLRRISNKEGKIDSVSFQLSDDSGDMYSDGNIWFVIAKDSDFLASTSPAFVLNGGFKNCRQKNKKTFYASSYVMETCAYLYGSGSKVGFLVVEEKRKSGDNEKPCKVTIAHYYAISSGNIFSQNKIDIGLSMVVRIQPSNEIGLDITIEGPIQHPSAALHYMFHEVMKTGIWK 714 +FPS + GSN ++ + E K +GH W + Y I+ S L L R +++G++ + Q D S+ I+F+ ++D L + N + +K + +V +T + +G G G +VVEE D P KVT+ HYYA+ + S+NKIDIGLSMVV I SN + L +++ GP+ HPS+ L M EV +TGIWK Sbjct: 4 SFPSNGNIKFGSNLIMNFNRREEK-SSGHRE------CWQVKYIIESSFVNLLLNREFDRDGRVQGLRLQFFDRR--YRSELIIFFIDKAENDLLNKIDFESIRQVSDTNTMIQTEK-HDSRGFVTKTSIFFHGGGR--GLIVVEENSTHIDMN-PYKVTVKHYYAVPREDYRSRNKIDIGLSMVVDISVSNNV-LVLSVVGPVHHPSSTLLRMIKEVARTGIWK 214
BLAST of Ca_17896 vs. TrEMBL
Match: K7LSF0_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 2.609e-16 Identity = 65/168 (38.69%), Postives = 87/168 (51.79%), Query Frame = 1 Query: 247 QLSDDSGDMYSD-GNIWFVIAKD--SDFLASTSPAFVLNGGFKNCRQKNKKTFYASSYVMETCAYLYGSGSKVGFLVVEEKRKSGDNEKPCKVTIAHYYAISSGNIFSQNKIDIGLSMVVRIQPSNEIGLDITIEGPIQHPSAALHYMFHEVMKTGIWKPTICPHCAS 741 +LS D D+YS+ G+ F I + S FL P V K A +T YLY G + G +V E KR GD E VT+AHY+A S + DIGLS+V +I+ + LD+T+EGP QHP+ +L +MF EV +T WKP I HCA+ Sbjct: 14 KLSLDETDVYSNWGDFSFTIQRTGTSSFL-QMHPNMVWADFQSIMSMKTNNAVDACGVSTQTVLYLYRRGKRGGLVVTECKRNRGDKEANA-VTMAHYFANSDDDK------DIGLSVVAKIRAALNGKLDVTVEGPEQHPAFSLLHMFDEVNRTRSWKPAIFSHCAA 173 The following BLAST results are available for this feature:
BLAST of Ca_17896 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL) Total hits: 14
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BLAST of Ca_17896 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
Sequences
The
following sequences are available for this feature:
mRNA sequence >Ca_17896_v1.0_kabuli ID=Ca_17896_v1.0_kabuli; Name=Ca_17896; organism=Cicer arietinum; type=mRNA; length=921bpback to top protein sequence of Ca_17896_v1.0_kabuli >Ca_17896_v1.0_kabuli ID=Ca_17896_v1.0_kabuli; Name=Ca_17896_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=306bpback to top mRNA from alignment at Ca8:15452427..15453347- Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.>Ca_17896_v1.0_kabuli ID=Ca_17896_v1.0_kabuli; Name=Ca_17896; organism=Cicer arietinum; type=mRNA; length=921bp; location=Sequence derived from: Ca8:15452427..15453347- (Cicer arietinumback to top Coding sequence (CDS) from alignment at Ca8:15452427..15453347- >Ca_17896_v1.0_kabuli ID=Ca_17896_v1.0_kabuli; Name=Ca_17896; organism=Cicer arietinum; type=CDS; length=921bp; location=Sequence derived from: Ca8:15452427..15453347- (Cicer arietinumback to top |