Ca_00708.1, Ca_00708.1_ICC4958_v2 (mRNA) Cicer arietinum

Transcript Overview
NameCa_00708.1
Unique NameCa_00708.1_ICC4958_v2
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length536
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca_LG_1supercontigCa_LG_1:7710616..7711151 +Cicer arietinum ICC 4958 genome v2n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum ICC 4958 genome v22015-08-11
InterProScan: C. arietinum ICC 4958, v2.0 (desi)2019-05-21
BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot2019-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
caipsR091Pisum sativum Cameor genome v1aPisum sativum
caipsR095Pisum sativum Cameor genome v1aPisum sativum
caipsR114Pisum sativum Cameor genome v1aPisum sativum
caipvR0017Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caipvR0049Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caivuR0013Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caivuR0048Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caivuR0051Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caiccR0026Cajanus cajan Asha genome v1.0Cajanus cajan
caiccR0031Cajanus cajan Asha genome v1.0Cajanus cajan
caiccR0043Cajanus cajan Asha genome v1.0Cajanus cajan
ancaiL0109Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiL0309Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiL1099Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiL1106Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiL1218Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiL1222Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiL1265Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaiL018Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaiL169Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaiL235Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaiL732Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaiL735Vigna angularis Jingnong 6 genome v1.1Vigna angularis
caitifR047Vicia faba cv. Tiffany genome v1.0Vicia faba
caitifR049Vicia faba cv. Tiffany genome v1.0Vicia faba
caitifR114Vicia faba cv. Tiffany genome v1.0Vicia faba
caivfhR044Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
caivfhR046Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
caivfhR107Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
caivrvR041Vigna radiata cv. VC1973A genome v6.0Vigna radiata
caivrvR044Vigna radiata cv. VC1973A genome v6.0Vigna radiata
caivrvR049Vigna radiata cv. VC1973A genome v6.0Vigna radiata
caivrvR084Vigna radiata cv. VC1973A genome v6.0Vigna radiata
caivssR0007Vicia sativa cv. Studenica genome v1.0Vicia sativa
caivssR0014Vicia sativa cv. Studenica genome v1.0Vicia sativa
caivssR0100Vicia sativa cv. Studenica genome v1.0Vicia sativa
caivuaR012Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
caivuaR049Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
caicanR0010Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
caicanR0019Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
rna-TanjilR_01347Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
jg44038.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vfaba.Hedin2.R1.1g058000.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Phvul.005G115200.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-XM_014645187.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-TanjilR_07223Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
LR48_mrnaVigan05g160500Vigna angularis Jingnong 6 genome v1.1Vigna angularis
evm.model.Chr05.2173Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigun05g226900.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-KK1_034737Cajanus cajan Asha genome v1.0Cajanus cajan
Vfaba.Tiffany.R1.1g039480.1Vicia faba cv. Tiffany genome v1.0Vicia faba

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-XM_004487356.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Ca_00708Ca_00708_ICC4958_v2Cicer arietinumgene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_00708.1.utr5p1Ca_00708.1.utr5p1_ICC4958_v2Cicer arietinumfive_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_00708.1.exon1Ca_00708.1.exon1_ICC4958_v2Cicer arietinumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_00708.1.cds1Ca_00708.1.cds1_ICC4958_v2Cicer arietinumCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_00708.1.utr3p1Ca_00708.1.utr3p1_ICC4958_v2Cicer arietinumthree_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_00708.1_ICC4958_v2Ca_00708.1_ICC4958_v2Cicer arietinumpolypeptide


Homology
The following BLAST results are available for this feature:
BLAST of Ca_00708.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: C. arietinum ICC 4958, v2.0 (desi)
Date Performed: 2019-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 44..68
NoneNo IPR availablePANTHERPTHR35495FAMILY NOT NAMEDcoord: 7..121
NoneNo IPR availablePANTHERPTHR35495:SF1coord: 7..121

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_00708.1_ICC4958_v2 ID=Ca_00708.1_ICC4958_v2; Name=Ca_00708.1; organism=Cicer arietinum; type=mRNA; length=536bp
TACACACACACAACCATATTTCCAATCTCTCTTCTCCCATTCTCATCTAT
TCCTCACTATGAAACAAAGAACAAGCAGACCTACCTTACCAAACCAGTTC
CACAAATTCCTCAAACCAGGCGCCCTCGCTCGGATCCGCGACTCTAAAAT
CACCGCCAGATCTCACCGTCTCCACTCCCTCTCTCAGATCTCAATCTACC
GCCCTCTTTCATCACCGCCGCCACCTTCTTCCACTGATCAACCTCAACCT
AACGCCGCCGATGGTTTCCCTTTTTTCGCCTCCGGGATCTACGGCCCTCG
CTGTCCGCAGAGGAAGAAACTAGTCGCTGCTAAGTCTGTTTTCTTCGTAC
CAAGTAGTCCTTCCGCTGACTCTAACGATCTCATCGTTGACTCGTTTAGC
GCCGATTTTATCGCCGCTAATTAAATGCTATTTGGTTATATATATGGATA
TTATAGTTTTTAGATTTGTAGATTTAGCGTGATTTTTGTTTTTTTGCTTC
AATTATGTGAACAAATTACTCGCATAGAACTTAAAT
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protein sequence of Ca_00708.1_ICC4958_v2

>Ca_00708.1_ICC4958_v2 ID=Ca_00708.1_ICC4958_v2; Name=Ca_00708.1_ICC4958_v2; organism=Cicer arietinum; type=polypeptide; length=121bp
MKQRTSRPTLPNQFHKFLKPGALARIRDSKITARSHRLHSLSQISIYRPL
SSPPPPSSTDQPQPNAADGFPFFASGIYGPRCPQRKKLVAAKSVFFVPSS
PSADSNDLIVDSFSADFIAAN
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mRNA from alignment at Ca_LG_1:7710616..7711151+

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_00708.1_ICC4958_v2 ID=Ca_00708.1_ICC4958_v2; Name=Ca_00708.1; organism=Cicer arietinum; type=mRNA; length=536bp; location=Sequence derived from: Ca_LG_1:7710616..7711151+ (Cicer arietinum
TACACACACACAACCATATTTCCAATCTCTCTTCTCCCATTCTCATCTAT
TCCTCACTATGAAACAAAGAACAAGCAGACCTACCTTACCAAACCAGTTC
CACAAATTCCTCAAACCAGGCGCCCTCGCTCGGATCCGCGACTCTAAAAT
CACCGCCAGATCTCACCGTCTCCACTCCCTCTCTCAGATCTCAATCTACC
GCCCTCTTTCATCACCGCCGCCACCTTCTTCCACTGATCAACCTCAACCT
AACGCCGCCGATGGTTTCCCTTTTTTCGCCTCCGGGATCTACGGCCCTCG
CTGTCCGCAGAGGAAGAAACTAGTCGCTGCTAAGTCTGTTTTCTTCGTAC
CAAGTAGTCCTTCCGCTGACTCTAACGATCTCATCGTTGACTCGTTTAGC
GCCGATTTTATCGCCGCTAATTAAATGCTATTTGGTTATATATATGGATA
TTATAGTTTTTAGATTTGTAGATTTAGCGTGATTTTTGTTTTTTTGCTTC
AATTATGTGAACAAATTACTCGCATAGAACTTAAAT
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Coding sequence (CDS) from alignment at Ca_LG_1:7710616..7711151+

>Ca_00708.1_ICC4958_v2 ID=Ca_00708.1_ICC4958_v2; Name=Ca_00708.1; organism=Cicer arietinum; type=CDS; length=366bp; location=Sequence derived from: Ca_LG_1:7710616..7711151+ (Cicer arietinum
ATGAAACAAAGAACAAGCAGACCTACCTTACCAAACCAGTTCCACAAATT
CCTCAAACCAGGCGCCCTCGCTCGGATCCGCGACTCTAAAATCACCGCCA
GATCTCACCGTCTCCACTCCCTCTCTCAGATCTCAATCTACCGCCCTCTT
TCATCACCGCCGCCACCTTCTTCCACTGATCAACCTCAACCTAACGCCGC
CGATGGTTTCCCTTTTTTCGCCTCCGGGATCTACGGCCCTCGCTGTCCGC
AGAGGAAGAAACTAGTCGCTGCTAAGTCTGTTTTCTTCGTACCAAGTAGT
CCTTCCGCTGACTCTAACGATCTCATCGTTGACTCGTTTAGCGCCGATTT
TATCGCCGCTAATTAA
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