Ca_07852.1, Ca_07852.1_ICC4958_v2 (mRNA) Cicer arietinum
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Ca_07852.1 vs. DB:Swiss
Match: LPCT1_ARATH (Lysophospholipid acyltransferase LPEAT1 OS=Arabidopsis thaliana OX=3702 GN=LPEAT1 PE=1 SV=1) HSP 1 Score: 503.827 bits (1296), Expect = 5.599e-178 Identity = 250/408 (61.27%), Postives = 303/408 (74.26%), Query Frame = 1 Query: 13 MESELKDLNSKPPKSNGNINTVRDDRPLLKSDSVSSSTTNAVDLQDLEKKFAPYVRRDVYGTMGRGDLAPKEKLLLGFALVTLLPIRVILATTVLVVYYLICRFCTLFSTPNREDE----------QDDYSRLRGWRRSVIVWCGKVLSRAMLFVFGFYWIPES---------------TTSFTQENKPQSEEMERPGVIISNHVSYLDILYHMSSSFPSFVAKRSVAKLPLVGLISKCLGCIYVQRESKSSDFKGVSAVATERIQEAHQNKYAPLMMLFPEGTTTNGDFLLPFKTGGFLAKAPVLPVILKYNYQRFSPAWDSISGVRHVIFLLCQFVNYIEVIKLPVYYPSQQEMDDPKLYASNVRRLMASEGNLTLSDIGLAEKRIYHAALNGNNCLPSVLHQKDD 1161 MESELKDLNS N N + ++DRPLLKS+S A +++L+KKFAPY R D+YGTMG G E + L ALVTL+P+R +L+ ++L++YYLICR TLFS P R E Q+DY+ + GW+R+VIV G+ LSR +LFVFGFYWI ES +T Q+ + +EE ERPG I+SNHVSYLDILYHMS+SFPSFVAKRSV KLPLVGLISKCLGC+YVQRE+KS DFKGVS ER++EAH NK AP +MLFPEGTTTNGD+LL FKTG FLA PVLPVILKY Y+RFS AWD+ISG RH++FLLCQ VN++EVI+LPVYYPSQ+E DDPKLYASNVR+LMA+EGNL LS++GL++KRIYHA LNGN HQK++ Sbjct: 1 MESELKDLNS-----NSNPPSSKEDRPLLKSES-----DLAAAIEELDKKFAPYARTDLYGTMGLGPFPMTENIKLAVALVTLVPLRFLLSMSILLLYYLICRVFTLFSAPYRGPEEEEDEGGVVFQEDYAHMEGWKRTVIVRSGRFLSRVLLFVFGFYWIHESCPDRDSDMDSNPKTTSTEINQKGEAATEEPERPGAIVSNHVSYLDILYHMSASFPSFVAKRSVGKLPLVGLISKCLGCVYVQREAKSPDFKGVSGTVNERVREAHSNKSAPTIMLFPEGTTTNGDYLLTFKTGAFLAGTPVLPVILKYPYERFSVAWDTISGARHILFLLCQVVNHLEVIRLPVYYPSQEEKDDPKLYASNVRKLMATEGNLILSELGLSDKRIYHATLNGNLSQTRDFHQKEE 398
BLAST of Ca_07852.1 vs. DB:Swiss
Match: LPCT2_ARATH (Lysophospholipid acyltransferase LPEAT2 OS=Arabidopsis thaliana OX=3702 GN=LPEAT2 PE=1 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 1.112e-34 Identity = 88/300 (29.33%), Postives = 149/300 (49.67%), Query Frame = 1 Query: 250 LVTLLPI---RVILATTVLVVYYLICRFCTLFSTPNREDEQDDYSRLRGWR---------RSVIVWCGKVLSRAMLFVFGFYWIPESTTSFTQENKPQSEEMERPGVIISNHVSYLDILYHMSSSFPSFVAKRSVAKLPLVGLISKCLGCIYVQRESKSSDFKGVSAVATERIQEAHQNKYAPLMMLFPEGTTTNGDFLLPFKTGGFLAKAPVLPVILKYNYQRFSPAWDSISGVRHVIFLLCQFVNYIEVIKLPVYYPSQQEMDDPKLYASNVRRLMASEGNLTLSDIGLAEKRIYHAA 1113 LV LPI R++L L V YL + L GW+ R I+W ++ +R +LF FG+ WI ++ KP E+ +++SNHVSY++ +++ P+ VA S LP VG I + + IYV R S++S V + ++A +++ P ++LFPEGTTTNG L+ F+ G F+ P+ PV+++Y + F +W +IS + + + QF N++EV LPV YPS+++ + + +A+ N+ + A+ + + A Sbjct: 93 LVICLPIALIRLVLFAASLAVGYLATKLA-----------------LAGWKDKENPMPLWRCRIMWITRICTRCILFSFGYQWI-------RRKGKPARREIA--PIVVSNHVSYIEPIFYFYELSPTIVASESHDSLPFVGTIIRAMQVIYVNRFSQTSRKNAVHEIK----RKASCDRF-PRLLLFPEGTTTNGKVLISFQLGAFIPGYPIQPVVVRYPHVHFDQSWGNISLLTLMFRMFTQFHNFMEVEYLPVIYPSEKQKQNAVRLSQKTSHAIATSLNVVQTSHSFADLMLLNKA 361
BLAST of Ca_07852.1 vs. DB:Swiss
Match: PCAT1_MOUSE (Lysophosphatidylcholine acyltransferase 1 OS=Mus musculus OX=10090 GN=Lpcat1 PE=1 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 8.274e-33 Identity = 94/316 (29.75%), Postives = 156/316 (49.37%), Query Frame = 1 Query: 214 LAPKEKLLLGFALVTLLPIRVILATTVLVVYYLICRFCTLFSTPNREDEQDDYSRLRGWRRSVIVWCGKVLSRAMLFVFGFYWIPESTTSFTQENKPQSEEMERPGVIISNHVSYLDILYHMSSSFPSFVAKRSVAKLPLVGLISKCLGCIYVQRESKSSDFKGVSAVATERIQEAHQNKYAPLMMLFPEGTTTNGDFLLPFKTGGFLAKAPVLPVILKY--NYQRFSPAWDSISGVRHVIFLLCQFVNYIEVIKLPVYYPSQQEMDDPKLYASNVRRLMASEGNLTLSD-------IGLAEKRIYHAALNGNNCL 1134 L+ +K + F +TL PIR++ A ++++ + +L P++E EQ L WR+ V+ + K + R M F GF+ + Q+ E + ++ H SY D + ++ + S V K +P+ G + + + ++V R + S K V + + A N P +M+FPEGT TN L+ FK G F+ PV PV+L+Y + W ++ + LCQF N +E+ LPVY PS++E +P LYASNVRR+MA ++++D + LAE ++ L + CL Sbjct: 38 LSALQKAQVAFMTLTLFPIRLLFAAFMMLLAWPFALLASL-GPPDKEPEQP----LALWRK-VVDFLLKAIMRTMWFAGGFHRVAVKGR--------QALPTEAAILTLAPHSSYFDAI-PVTMTMSSIVMKAESRDIPIWGTLIRYIRPVFVSRSDQDSRRKTVEEIK----RRAQSNGKWPQIMIFPEGTCTNRTCLITFKPGAFIPGVPVQPVVLRYPNKLDTITWTWQGPGALKILWLTLCQFQNQVEIEFLPVYCPSEEEKRNPALYASNVRRVMAKALGVSVTDYTFEDCQLALAEGQLR---LPADTCL 331
BLAST of Ca_07852.1 vs. DB:Swiss
Match: PCAT1_RAT (Lysophosphatidylcholine acyltransferase 1 OS=Rattus norvegicus OX=10116 GN=Lpcat1 PE=2 SV=2) HSP 1 Score: 131.724 bits (330), Expect = 1.315e-32 Identity = 94/316 (29.75%), Postives = 156/316 (49.37%), Query Frame = 1 Query: 214 LAPKEKLLLGFALVTLLPIRVILATTVLVVYYLICRFCTLFSTPNREDEQDDYSRLRGWRRSVIVWCGKVLSRAMLFVFGFYWIPESTTSFTQENKPQSEEMERPGVIISNHVSYLDILYHMSSSFPSFVAKRSVAKLPLVGLISKCLGCIYVQRESKSSDFKGVSAVATERIQEAHQNKYAPLMMLFPEGTTTNGDFLLPFKTGGFLAKAPVLPVILKY--NYQRFSPAWDSISGVRHVIFLLCQFVNYIEVIKLPVYYPSQQEMDDPKLYASNVRRLMASEGNLTLSD-------IGLAEKRIYHAALNGNNCL 1134 L+ +K + F +TL PIR++ A ++++ + +L P++E EQ L WR+ V+ + K + R M F GF+ + Q+ E + ++ H SY D + ++ + S V K +P+ G + + + ++V R + S K V + + A N P +M+FPEGT TN L+ FK G F+ PV PV+L+Y + W ++ + LCQF N +E+ LPVY PS++E +P LYASNVRR+MA ++++D + LAE ++ L + CL Sbjct: 38 LSALQKAQVAFMTLTLFPIRLLFAAFMMLLAWPFALVASL-GPPDKEPEQP----LALWRK-VVDFLLKAIMRTMWFAGGFHRVAVKGR--------QALPTEAAILTLAPHSSYFDAI-PVTMTMSSIVMKAESRDIPIWGTLIRYIRPVFVSRSDQDSRRKTVEEIK----RRAQSNGKWPQIMIFPEGTCTNRTCLITFKPGAFIPGVPVQPVVLRYPNKLDTITWTWQGPGALKILWLTLCQFQNQVEIEFLPVYCPSEEEKRNPALYASNVRRVMAKALGVSVTDYTFEDCQLALAEGQLR---LPADTCL 331
BLAST of Ca_07852.1 vs. DB:Swiss
Match: PCAT1_DANRE (Lysophosphatidylcholine acyltransferase 1 OS=Danio rerio OX=7955 GN=lpcat1 PE=2 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 1.808e-32 Identity = 90/309 (29.13%), Postives = 147/309 (47.57%), Query Frame = 1 Query: 226 EKLLLGFALVTLLPIRVILATTVLVVYYLICRFCTLFSTPNREDEQDDYSRLRGWRRSVIVWCGKVLSRAMLFVFGFYWIPESTTSFTQENKPQSEEMERPGVIISNHVSYLDILYHMSSSFPSFVAKRSVAKLPLVGLISKCLGCIYVQRESKSSDFKGVSAVATERIQEAHQNKYAPLMMLFPEGTTTNGDFLLPFKTGGFLAKAPVLPVILKY--NYQRFSPAWDSISGVRHVIFLLCQFVNYIEVIKLPVYYPSQQEMDDPKLYASNVRRLMASEGNLTLSDIGLAEKRIYHAA----LNGNNCL 1134 +KL + VTL P+R++ A ++++ + T+ + N + W R ++ K + RAM F GF+W+ + +P + E P + ++ H SY D + ++ + S V K +P+ G + K + ++V R + S K V + + A N P +M+FPEGT TN L+ FK G F+ PV PV+L+Y S W + + LCQ N++E+ LP Y PS++E DP L+ASNVRR+MA L + D + ++ A L + CL Sbjct: 37 QKLKIAVMTVTLFPVRLLFAAFMMLLAWPFAFVATVGRSENAVEPL-------SWWRWLVDLALKAIMRAMWFSGGFHWV-------RVKGRP-ALPSEAPILTMAPHSSYFDAI-PVTMTMASIVMKAESKDIPVWGTLIKFIRPVFVSRSDQDSRRKTVEEIK----RRASSNGEWPQIMIFPEGTCTNRSCLIAFKPGAFIPGVPVQPVVLRYPNELDTISWTWQGPGAFKILWLTLCQLHNFVEIEYLPTYTPSEEEKKDPALFASNVRRIMAKALGLPIIDYSFEDCQLAMAKGPLRLPKHTCL 325
BLAST of Ca_07852.1 vs. DB:Swiss
Match: PCAT_DROME (Lysophosphatidylcholine acyltransferase OS=Drosophila melanogaster OX=7227 GN=LPCAT PE=2 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 2.173e-32 Identity = 93/280 (33.21%), Postives = 138/280 (49.29%), Query Frame = 1 Query: 253 VTLLPIRVILATTVLVVYYLICRFCTLFSTPNREDEQDDYSRLRGWRRSV--IVWCGKVLSRAMLFVFG-FYWIPESTTSFTQENKPQSEEMERPGVIISNHVSYLDILYHMSSSFPSFVAKRSVAKLPLVGLISKCLGCIYVQRESKSSDFKGVSAVATERIQEAHQNKYAPLMMLFPEGTTTNGDFLLPFKTGGFLAKAPVLPVILKY--NYQRFSPAWDSISGVRHVIFLLCQFVNYIEVIKLPVYYPSQQEMDDPKLYASNVRRLMASEGNLTLSD 1077 V LLPIRV+ L+ ++ C +D + L GWR+ + + CG M++ FG F+++ + T + E P ++++ H SY+D + ++S PS VAKR A +PL+G I IYVQRE +S + + + A P +++F EGT TN L+ FK G F PV PV+LKY Y F+ WD +R + + QF N E+ LPVY PS+ E+ D LYA+NVR +MA + SD Sbjct: 73 VLLLPIRVVGCVLSLISAWMFA--CIGLYGMTLDDLK--AKPLTGWRKQMQYMTACGM----RMVYTFGSFHYVTMKGRAATAK--------EAPILVVAPHSSYVDSILVVASGPPSIVAKRETADIPLLGKIINYAQPIYVQREDPNSRQNTIRDI----VDRARSTDDWPQVVIFAEGTCTNRTALIKFKPGAFYPGVPVQPVLLKYPNKYDTFTWTWDGPGVLRLLWLTMTQFYNRCEIEYLPVYTPSEDEVADANLYANNVREVMAKALGVPTSD 332
BLAST of Ca_07852.1 vs. DB:Swiss
Match: PCAT1_HUMAN (Lysophosphatidylcholine acyltransferase 1 OS=Homo sapiens OX=9606 GN=LPCAT1 PE=1 SV=2) HSP 1 Score: 127.487 bits (319), Expect = 4.723e-31 Identity = 92/316 (29.11%), Postives = 155/316 (49.05%), Query Frame = 1 Query: 214 LAPKEKLLLGFALVTLLPIRVILATTVLVVYYLICRFCTLFSTPNREDEQDDYSRLRGWRRSVIVWCGKVLSRAMLFVFGFYWIPESTTSFTQENKPQSEEMERPGVIISNHVSYLDILYHMSSSFPSFVAKRSVAKLPLVGLISKCLGCIYVQRESKSSDFKGVSAVATERIQEAHQNKYAPLMMLFPEGTTTNGDFLLPFKTGGFLAKAPVLPVILKY--NYQRFSPAWDSISGVRHVIFLLCQFVNYIEVIKLPVYYPSQQEMDDPKLYASNVRRLMASEGNLTLSD-------IGLAEKRIYHAALNGNNCL 1134 L+ +K + +TL P+R+++A ++++ + + +L S +E EQ WR+ V+ + K + R M F GF+ + Q+ E + ++ H SY D + ++ + S V K +P+ G + + + ++V R + S K V + + A N P +M+FPEGT TN L+ FK G F+ APV PV+L+Y + W + + LCQF N +E+ LPVY PS++E +P LYASNVRR+MA ++++D + LAE ++ L + CL Sbjct: 38 LSALQKAQVALMTLTLFPVRLLVAAAMMLLAWPLALVASLGSA-EKEPEQPPAL----WRK-VVDFLLKAIMRTMWFAGGFHRVAVKGR--------QALPTEAAILTLAPHSSYFDAI-PVTMTMSSIVMKAESRDIPIWGTLIQYIRPVFVSRSDQDSRRKTVEEIK----RRAQSNGKWPQIMIFPEGTCTNRTCLITFKPGAFIPGAPVQPVVLRYPNKLDTITWTWQGPGALEILWLTLCQFHNQVEIEFLPVYSPSEEEKRNPALYASNVRRVMAEALGVSVTDYTFEDCQLALAEGQLR---LPADTCL 331
BLAST of Ca_07852.1 vs. DB:Swiss
Match: LPCT4_XENTR (Lysophospholipid acyltransferase LPCAT4 OS=Xenopus tropicalis OX=8364 GN=lpcat4 PE=2 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 9.784e-31 Identity = 89/274 (32.48%), Postives = 141/274 (51.46%), Query Frame = 1 Query: 235 LLGFALVTLLPIRVILATTVLVVYYLICRFCTLFSTPNREDEQDDYSRLRGWRRSVIVWCGKVLSRAMLFVFGFYWIPESTTSFTQENKPQSEEMERPGVIISNHVSYLDILYHMSSSFPSFVAKRSVAKLPLVGLISKCLGCIYVQRESKSSDFKGVSAVATERIQEAHQNKYAPLMMLFPEGTTTNGDFLLPFKTGGFLAKAPVLPVILKYNYQRFSPAWD-SISGVRHVIFL-LCQFVNYIEVIKLPVYYPSQQEMDDPKLYASNVRRLMA 1050 +LGF TL P+R +LA L + + I T +++ SR RR+++ +LSR M F+ GF+WI + P SE P ++++ H ++ D + + PS V++ +P++G + + I V R+ SS K V E + A N P ++ FPEGT NG LL FK G F+A PV PV+++Y + + W +GV V++L + QF +E+ LPVY+P+ +E DP LYAS V+++MA Sbjct: 43 ILGF---TLFPLRFLLAAIFLFLMWPIAALRVAGLT------EEELSRSIRHRRTILHHLIYLLSRTMFFMCGFHWI-----TIRGRRAPASEA---PLLVVAPHSTFFDPIVTVVCDLPSVVSRVENLNIPVIGALLRFNQSILVSRQDPSSRKK----VVEEVKKRATSNGDWPQVLFFPEGTNGNGKVLLKFKPGAFVAGVPVQPVLMRYPNKLPATIWTWKGNGVFKVLWLTMSQFYINLEIEFLPVYHPTAEERADPTLYASKVQKIMA 295
BLAST of Ca_07852.1 vs. DB:Swiss
Match: LPCT4_XENLA (Lysophospholipid acyltransferase LPCAT4 OS=Xenopus laevis OX=8355 GN=lpcat4 PE=2 SV=2) HSP 1 Score: 117.087 bits (292), Expect = 1.708e-27 Identity = 83/266 (31.20%), Postives = 135/266 (50.75%), Query Frame = 1 Query: 259 LLPIRVILATTVLVVYYLICRFCTLFSTPNREDEQDDYSRLRGWRRSVIVWCGKVLSRAMLFVFGFYWIPESTTSFTQENKPQSEEMERPGVIISNHVSYLDILYHMSSSFPSFVAKRSVAKLPLVGLISKCLGCIYVQRESKSSDFKGVSAVATERIQEAHQNKYAPLMMLFPEGTTTNGDFLLPFKTGGFLAKAPVLPVILKYNYQRFSPAWD-SISGVRHVIFL-LCQFVNYIEVIKLPVYYPSQQEMDDPKLYASNVRRLMA 1050 L P+R +LA L + + I T +++ +R RR+++ +LSR M F+ GF+WI + P SE P ++++ H ++ D + + PS V++ +P++G + + I V R+ SS K V E + A N P ++ FPEGT NG LL FK G F+A PV PV+++Y + + W +GV V++L + QF +E+ LPVY+P+ +E DP LYA V+++MA Sbjct: 48 LFPLRFLLAAVFLFLMWPIAALRVAGLT-----DKELSCSIRH-RRTILHHLIYLLSRTMFFMCGFHWI-----TIRGRRAPASEA---PILVVAPHSTFFDPIVTVVCDLPSVVSRVENLNIPVIGALLRFNQSILVSRQDPSSRKK----VVEEVKRRATSNGEWPQVLFFPEGTNGNGKVLLKFKPGAFVAGVPVQPVLMRYPNKLPATIWTWKGNGVFKVLWLTMSQFYINLEIEFLPVYHPTAEERADPTLYAFKVQKIMA 295
BLAST of Ca_07852.1 vs. DB:Swiss
Match: PCAT2_MOUSE (Lysophosphatidylcholine acyltransferase 2 OS=Mus musculus OX=10090 GN=Lpcat2 PE=1 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 2.296e-27 Identity = 84/306 (27.45%), Postives = 143/306 (46.73%), Query Frame = 1 Query: 226 EKLLLGFALVTLLPIRVILATTVLVVYYLICRFCTLFSTPNREDEQDDYSRLRGWRRSVIVWCGKVLSRAMLFVFGFYWIPESTTSFTQENKPQSEEMERPGVIISNHVSYLDILYHMSSSFPSFVAKRSVAKLPLVGLISKCLGCIYVQRESKSSDFKGVSAVATERIQEAHQNKYAPLMMLFPEGTTTNGDFLLPFKTGGFLAKAPVLPVILKY--NYQRFSPAWDSISGVRHVIFLLCQFVNYIEVIKLPVYYPSQQEMDDPKLYASNVRRLMASEGNLTLSDIGLAEKRIYHAALNGNNCLP 1137 + LLG + LLP+R +L +L++ + T P + + WRR + L+RAM F GF + T + K S +E P +++ H ++ D + + + PS V++ A+ PLVG + + L + V R S ++ + + A P +++FPEGT TN L+ FK G F+ PV PV+L+Y + W + ++ + CQ +E+ +PV PS++E +DP L+AS +R LMA + ++D + R+ +A G LP Sbjct: 57 QMFLLG---IILLPVRALLVGIILLLAWPFAVISTA-CCPEKLTHP-----ISNWRRKITRPALTFLARAMFFSMGF--------TVTVKGKVASP-LEAPIFVVAPHSTFFDGIACVVAGLPSLVSRNENAQTPLVGRLLRALQPVLVSRVDPDSRKNTINEIK----KRATSGGEWPQILVFPEGTCTNRSCLITFKPGAFIPGVPVQPVLLRYPNKLDTVTWTWQGYTFLQLCVLTFCQLFTKVEIEFMPVQAPSEEEKNDPVLFASRIRNLMAEALEIPVTDHTYEDCRLMISA--GQLTLP 338 The following BLAST results are available for this feature:
BLAST of Ca_07852.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: C. arietinum ICC 4958, v2.0 (desi)
Date Performed: 2019-05-21
Sequences
The
following sequences are available for this feature:
mRNA sequence >Ca_07852.1_ICC4958_v2 ID=Ca_07852.1_ICC4958_v2; Name=Ca_07852.1; organism=Cicer arietinum; type=mRNA; length=6701bpback to top protein sequence of Ca_07852.1_ICC4958_v2 >Ca_07852.1_ICC4958_v2 ID=Ca_07852.1_ICC4958_v2; Name=Ca_07852.1_ICC4958_v2; organism=Cicer arietinum; type=polypeptide; length=387bpback to top mRNA from alignment at Ca_LG_3:40604595..40611295+ Legend: five_prime_UTRexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Ca_07852.1_ICC4958_v2 ID=Ca_07852.1_ICC4958_v2; Name=Ca_07852.1; organism=Cicer arietinum; type=mRNA; length=6701bp; location=Sequence derived from: Ca_LG_3:40604595..40611295+ (Cicer arietinumback to top Coding sequence (CDS) from alignment at Ca_LG_3:40604595..40611295+ >Ca_07852.1_ICC4958_v2 ID=Ca_07852.1_ICC4958_v2; Name=Ca_07852.1; organism=Cicer arietinum; type=CDS; length=1164bp; location=Sequence derived from: Ca_LG_3:40604595..40611295+ (Cicer arietinumback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|