Ca_07927.1, Ca_07927.1_ICC4958_v2 (mRNA) Cicer arietinum
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Ca_07927.1 vs. DB:Swiss
Match: RHF2A_ARATH (E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana OX=3702 GN=RHF2A PE=2 SV=1) HSP 1 Score: 311.227 bits (796), Expect = 2.090e-103 Identity = 170/341 (49.85%), Postives = 223/341 (65.40%), Query Frame = 1
Query: 16 ENHMTSAAAFVEGGIQESCDDACSICLEEFCNSDPSTVTICRHEFHLQCVLEWCQRSSQCPMCWRPISLKDPTSQELFEAVEQERKWRVAPSRNAAIFHHNALGDFGLQQLRMAINDDDFEERILQHLAAAASMRRAHPIGRRE--RQRIQPFAHDPSEIPMDNPSIPVTSNGDEPLQ------QTPRLQXXXXXXXXXXXXXXNDQEIYSNDRRNVA------------NSSPKDQDRAGSSEFHSFTDTLRSRLNSVSMRYKESISKGARGWKEMLFSRSSSMSELGSDSRKDVNPEIASVSRLMEYVEARENNRVVDTSLSNHLEDGSMAEASNHNRS 978
E H+TSAAAFVEGGIQ++CDDACSICLE FC SDPST+T C+HE+HLQC+LEWCQRSSQCPMCW+ ISLKDPTSQEL EAVEQER +R P+RNA IF H LGDF LQ L + +++ + EERI+QHLAAAA+M RA RRE R R H + P+ ++ + + ++N Q S+ R V+ SSP +QDRAG SE SF+++L+SRLN+VS RYKESISK R WK+ LFSR++SM++LGS+ +++V+ IA+VSR+ME +E REN+R S+S+ E+ + + HNR+
Sbjct: 11 EGHLTSAAAFVEGGIQDACDDACSICLESFCESDPSTLTSCKHEYHLQCILEWCQRSSQCPMCWQSISLKDPTSQELLEAVEQERNFRFNPTRNATIFRHPTLGDFELQHLPVGVDNAEIEERIIQHLAAAAAMGRARHGVRREGHRSRSSSQGHQQFMVFSSQPNASSPPPHPPMPSSPSQRDESDTVSNLPHNALGEGSHQSNTQPPTSSHPRQVSPSASDSNSRPLNQSSPSEQDRAGPSELQSFSESLKSRLNAVSTRYKESISKNTRNWKDRLFSRNTSMADLGSEVKREVSAGIATVSRMMERLETRENSRPSTASVSDVSENHTPETNNEHNRA 351
BLAST of Ca_07927.1 vs. DB:Swiss
Match: RING3_ARATH (E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana OX=3702 GN=At3g02290 PE=2 SV=1) HSP 1 Score: 59.6918 bits (143), Expect = 4.638e-9 Identity = 22/52 (42.31%), Postives = 32/52 (61.54%), Query Frame = 1
Query: 73 DDACSICLEEFCNSDPSTVTICRHEFHLQCVLEWCQRSSQCPMCWRPISLKD 228
+D C CLEE+ + +P VT C H FHL C+ EW +RS CP+C + + +
Sbjct: 178 EDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEFNE 229
BLAST of Ca_07927.1 vs. DB:Swiss
Match: RHB1A_ARATH (Probable E3 ubiquitin-protein ligase RHB1A OS=Arabidopsis thaliana OX=3702 GN=RHB1A PE=2 SV=1) HSP 1 Score: 57.7658 bits (138), Expect = 1.070e-8 Identity = 23/52 (44.23%), Postives = 33/52 (63.46%), Query Frame = 1
Query: 73 DDACSICLEEFCNSDPSTVTICRHEFHLQCVLEWCQRSSQCPMCWRPISLKD 228
+D C IC E++ +P T C HEFHL C+LEW +RS +CP+C + + D
Sbjct: 136 EDCCPICFEDYDVENPRLTTKCEHEFHLSCLLEWIERSDRCPICDKEVVFDD 187
BLAST of Ca_07927.1 vs. DB:Swiss
Match: AIRP1_ARATH (E3 ubiquitin-protein ligase AIRP1 OS=Arabidopsis thaliana OX=3702 GN=AIRP1 PE=1 SV=1) HSP 1 Score: 55.0694 bits (131), Expect = 5.022e-8 Identity = 23/51 (45.10%), Postives = 33/51 (64.71%), Query Frame = 1
Query: 76 DACSICLEEFCNSDPSTVTICRHEFHLQCVLEWCQRSSQCPMCWRPISLKD 228
D C ICLEE+ +P +T C H+FHL C+L W +RS CP+C + + L +
Sbjct: 102 DECPICLEEYEIDNPKLLTKCGHDFHLACILAWMERSEACPVCDKELVLTE 152
BLAST of Ca_07927.1 vs. DB:Swiss
Match: RHF1A_ARATH (E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana OX=3702 GN=RHF1A PE=1 SV=1) HSP 1 Score: 55.0694 bits (131), Expect = 3.379e-7 Identity = 26/68 (38.24%), Postives = 46/68 (67.65%), Query Frame = 1
Query: 685 EFHSFTDTLRSRLNSVSMRYKESISKGARGWKEMLFSRSSSMSELGSDSRKDVNPEIASVSRLMEYVE 888
E S + ++S+L + S +YKESISK +G KE L +R++S+ EL ++++N IA V+R++E ++
Sbjct: 249 EASSLPEAIKSKLAAASAKYKESISKSKQGLKEKLLARNNSVKELSKGVQREMNAGIAGVARMIERMD 316
BLAST of Ca_07927.1 vs. DB:Swiss
Match: RN181_DROME (E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila melanogaster OX=7227 GN=CG7694 PE=2 SV=1) HSP 1 Score: 51.9878 bits (123), Expect = 4.799e-7 Identity = 21/61 (34.43%), Postives = 33/61 (54.10%), Query Frame = 1
Query: 64 ESCDDACSICLEEFCNSDPSTVTICRHEFHLQCVLEWCQRSSQCPMCWRPISLKDPTSQEL 246
E D CS+C E + C+HEFH +C+L W ++++ CP+C + DP +EL
Sbjct: 64 EGGDLECSVCKEPAEEGQKYRILPCKHEFHEECILLWLKKTNSCPLCRYELETDDPVYEEL 124 The following BLAST results are available for this feature:
BLAST of Ca_07927.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot) Total hits: 6
InterPro
Analysis Name: InterProScan: C. arietinum ICC 4958, v2.0 (desi)
Date Performed: 2019-05-21
Sequences
The
following sequences are available for this feature:
mRNA sequence >Ca_07927.1_ICC4958_v2 ID=Ca_07927.1_ICC4958_v2; Name=Ca_07927.1; organism=Cicer arietinum; type=mRNA; length=2314bpback to top protein sequence of Ca_07927.1_ICC4958_v2 >Ca_07927.1_ICC4958_v2 ID=Ca_07927.1_ICC4958_v2; Name=Ca_07927.1_ICC4958_v2; organism=Cicer arietinum; type=polypeptide; length=326bpback to top mRNA from alignment at Ca_LG_3:41280955..41283268- Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>Ca_07927.1_ICC4958_v2 ID=Ca_07927.1_ICC4958_v2; Name=Ca_07927.1; organism=Cicer arietinum; type=mRNA; length=2314bp; location=Sequence derived from: Ca_LG_3:41280955..41283268- (Cicer arietinumback to top Coding sequence (CDS) from alignment at Ca_LG_3:41280955..41283268- >Ca_07927.1_ICC4958_v2 ID=Ca_07927.1_ICC4958_v2; Name=Ca_07927.1; organism=Cicer arietinum; type=CDS; length=981bp; location=Sequence derived from: Ca_LG_3:41280955..41283268- (Cicer arietinumback to top |