Ca_07971.1, Ca_07971.1_ICC4958_v2 (mRNA) Cicer arietinum
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of Ca_07971.1 vs. DB:Swiss
Match: TRL33_ORYSJ (Thioredoxin-like 3-3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0560200 PE=2 SV=2) HSP 1 Score: 204.527 bits (519), Expect = 5.568e-68 Identity = 93/128 (72.66%), Postives = 105/128 (82.03%), Query Frame = 1 Query: 40 EDNNNSKKGLEGTGLILPINHHSNLKSASTDNDFTQILTHIKSSKTPAVINYGASWCRVCSQILPAFCSLSNKFPKLSFVYADIDECPETTQHIRYTPTFQFFRDGEKVDEMYGTGEERLHDRLWLHS 423 E+ K GLEGTGL LP + H NL+SA +D Q+L +KSSK+PAVINYGASWCRVCSQILP FC SN+F L+F+YADIDECPETTQ+IRYTPTF F+RDGEKVDEM GTGEERLHDRLWLHS Sbjct: 2 EEGEAKKTGLEGTGLSLPGSSHGNLRSAGSDQQLKQMLDSLKSSKSPAVINYGASWCRVCSQILPPFCRFSNEFKNLTFIYADIDECPETTQNIRYTPTFHFYRDGEKVDEMLGTGEERLHDRLWLHS 129
BLAST of Ca_07971.1 vs. DB:Swiss
Match: TRL33_ARATH (Thioredoxin-like 3-3 OS=Arabidopsis thaliana OX=3702 GN=At3g53220 PE=2 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 2.064e-59 Identity = 84/109 (77.06%), Postives = 91/109 (83.49%), Query Frame = 1 Query: 97 NHHSNLKSASTDNDFTQILTHIKSSKTPAVINYGASWCRVCSQILPAFCSLSNKFPKLSFVYADIDECPETTQHIRYTPTFQFFRDGEKVDEMYGTGEERLHDRLWLHS 423 N + N+K A D F IL IKSSK+PAVINYGASWC VCSQILPAF LSN F KL FVYADIDECPETT+HIRYTPTFQF+RDGEKVDEM+G GE+RLHDRLWLHS Sbjct: 18 NDNGNVKIAPNDQSFLTILDDIKSSKSPAVINYGASWCGVCSQILPAFRKLSNSFSKLKFVYADIDECPETTRHIRYTPTFQFYRDGEKVDEMFGAGEQRLHDRLWLHS 126
BLAST of Ca_07971.1 vs. DB:Swiss
Match: TRXH_POPJC (Thioredoxin H-type OS=Populus jackii OX=640484 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 5.795e-17 Identity = 39/135 (28.89%), Postives = 66/135 (48.89%), Query Frame = 1 Query: 13 MGIDMSGNGEDNNNSKKGLEGTGLILPINHHSNLKSASTDNDFTQILTHIKSSKTPAVINYGASWCRVCSQILPAFCSLSNKFPKLSFVYADIDECPE--TTQHIRYTPTFQFFRDGEKVDEMYGTGEERLHDRL 411 MG+ ++ D ++ + +E G N+ +T + Q L+ + N+ A WC C QI P + LS +P L F+ D+DE + + I+ TPTF F RDG++VD++ G + LH ++ Sbjct: 1 MGLCLAKRNHDADDDEPHIELAG--------GNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHKKI 127
BLAST of Ca_07971.1 vs. DB:Swiss
Match: THIO_HORSE (Thioredoxin OS=Equus caballus OX=9796 GN=TXN PE=3 SV=3) HSP 1 Score: 70.4774 bits (171), Expect = 1.855e-15 Identity = 30/76 (39.47%), Postives = 46/76 (60.53%), Query Frame = 1 Query: 181 AVINYGASWCRVCSQILPAFCSLSNKFPKLSFVYADIDECPETTQ--HIRYTPTFQFFRDGEKVDEMYGTGEERLH 402 V+++ A+WC C I P F SLS K+ + F+ D+D+C + ++ PTFQFF+ G+KVDE G +E+L Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVDEFSGANKEKLE 98
BLAST of Ca_07971.1 vs. DB:Swiss
Match: TRXH5_ORYSJ (Thioredoxin H5 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0480200 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 5.365e-15 Identity = 35/96 (36.46%), Postives = 53/96 (55.21%), Query Frame = 1 Query: 130 DNDFTQILTHIKSSKTPAVINYGASWCRVCSQILPAFCSLSNKFPKLSFVYADIDECPE-TTQH-IRYTPTFQFFRDGEKVDEMYGTGEERLHDRL 411 DN ++ H K+ V+ + A WC C P F LS K+P + FV D+DE PE TQ+ +R TPTF F ++ E++D++ G E L ++ Sbjct: 32 DNTMEEVAEHGKT----VVLKFSAIWCTPCRNAAPLFAELSLKYPDIVFVSVDVDEMPELVTQYDVRATPTFIFMKNNEEIDKLVGGNHEDLQEKF 123
BLAST of Ca_07971.1 vs. DB:Swiss
Match: THIO_RABIT (Thioredoxin OS=Oryctolagus cuniculus OX=9986 GN=TXN PE=1 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 1.598e-14 Identity = 32/99 (32.32%), Postives = 54/99 (54.55%), Query Frame = 1 Query: 112 LKSASTDNDFTQILTHIKSSKTPAVINYGASWCRVCSQILPAFCSLSNKFPKLSFVYADIDECPETTQ--HIRYTPTFQFFRDGEKVDEMYGTGEERLH 402 +K + + F ++L + V+++ A+WC C I P F +LS KF + F+ D+D+C + ++ PTFQFF+ G+KV E G +E+L Sbjct: 2 VKQIESKSAFQEVLDS--AGDKLVVVDFSATWCGPCKMIKPFFHALSEKFNNVVFIEVDVDDCKDIAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLE 98
BLAST of Ca_07971.1 vs. DB:Swiss
Match: THIO_SHEEP (Thioredoxin OS=Ovis aries OX=9940 GN=TXN PE=3 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 2.511e-14 Identity = 29/76 (38.16%), Postives = 45/76 (59.21%), Query Frame = 1 Query: 181 AVINYGASWCRVCSQILPAFCSLSNKFPKLSFVYADIDECPETTQ--HIRYTPTFQFFRDGEKVDEMYGTGEERLH 402 V+++ A+WC C I P F SLS K+ + F+ D+D+C + ++ PTFQFF+ G+KV E G +E+L Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVSEFSGANKEKLE 98
BLAST of Ca_07971.1 vs. DB:Swiss
Match: THIO_MACMU (Thioredoxin OS=Macaca mulatta OX=9544 GN=TXN PE=3 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 2.919e-14 Identity = 29/76 (38.16%), Postives = 45/76 (59.21%), Query Frame = 1 Query: 181 AVINYGASWCRVCSQILPAFCSLSNKFPKLSFVYADIDECPETTQ--HIRYTPTFQFFRDGEKVDEMYGTGEERLH 402 V+++ A+WC C I P F SLS K+ + F+ D+D+C + ++ PTFQFF+ G+KV E G +E+L Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLE 98
BLAST of Ca_07971.1 vs. DB:Swiss
Match: THIO_CALJA (Thioredoxin OS=Callithrix jacchus OX=9483 GN=TXN PE=3 SV=3) HSP 1 Score: 67.3958 bits (163), Expect = 3.393e-14 Identity = 29/76 (38.16%), Postives = 45/76 (59.21%), Query Frame = 1 Query: 181 AVINYGASWCRVCSQILPAFCSLSNKFPKLSFVYADIDECPETTQ--HIRYTPTFQFFRDGEKVDEMYGTGEERLH 402 V+++ A+WC C I P F SLS K+ + F+ D+D+C + ++ PTFQFF+ G+KV E G +E+L Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLE 98
BLAST of Ca_07971.1 vs. DB:Swiss
Match: THIO_PIG (Thioredoxin OS=Sus scrofa OX=9823 GN=TXN PE=1 SV=3) HSP 1 Score: 67.0106 bits (162), Expect = 3.581e-14 Identity = 29/76 (38.16%), Postives = 45/76 (59.21%), Query Frame = 1 Query: 181 AVINYGASWCRVCSQILPAFCSLSNKFPKLSFVYADIDECPETTQ--HIRYTPTFQFFRDGEKVDEMYGTGEERLH 402 V+++ A+WC C I P F SLS K+ + F+ D+D+C + ++ PTFQFF+ G+KV E G +E+L Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLE 98 The following BLAST results are available for this feature:
BLAST of Ca_07971.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: C. arietinum ICC 4958, v2.0 (desi)
Date Performed: 2019-05-21
Sequences
The
following sequences are available for this feature:
mRNA sequence >Ca_07971.1_ICC4958_v2 ID=Ca_07971.1_ICC4958_v2; Name=Ca_07971.1; organism=Cicer arietinum; type=mRNA; length=996bpback to top protein sequence of Ca_07971.1_ICC4958_v2 >Ca_07971.1_ICC4958_v2 ID=Ca_07971.1_ICC4958_v2; Name=Ca_07971.1_ICC4958_v2; organism=Cicer arietinum; type=polypeptide; length=141bpback to top mRNA from alignment at Ca_LG_3:41674051..41675046- Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>Ca_07971.1_ICC4958_v2 ID=Ca_07971.1_ICC4958_v2; Name=Ca_07971.1; organism=Cicer arietinum; type=mRNA; length=996bp; location=Sequence derived from: Ca_LG_3:41674051..41675046- (Cicer arietinumback to top Coding sequence (CDS) from alignment at Ca_LG_3:41674051..41675046- >Ca_07971.1_ICC4958_v2 ID=Ca_07971.1_ICC4958_v2; Name=Ca_07971.1; organism=Cicer arietinum; type=CDS; length=426bp; location=Sequence derived from: Ca_LG_3:41674051..41675046- (Cicer arietinumback to top |