Ca_07973.1, Ca_07973.1_ICC4958_v2 (mRNA) Cicer arietinum
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of Ca_07973.1 vs. DB:Swiss
Match: XTH32_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 32 OS=Arabidopsis thaliana OX=3702 GN=XTH32 PE=2 SV=1) HSP 1 Score: 480.33 bits (1235), Expect = 5.095e-172 Identity = 222/262 (84.73%), Postives = 244/262 (93.13%), Query Frame = 1 Query: 58 KFNSINFYKGFTNLWGPQHQRIDQNALTIWLDRTSGSGFKSVRPFRSGYFGASIKLQPGYTAGVITAFYLSNNEAHPGYHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIVGREMKFHLWFDPTKDFHHYAILWSPKEIIFLVDDVPIRRYPRKSDATFPIRPMWLYGSIWDASSWATEDGKYKADYKYQPFVARYTNFKASGCTAFAPLWCHPVSASPYGSGGLTSQQYRAMRWVQRYQLAYNYCQDPKRDHRLTPECW 843 K S+NFYKGF NLWGPQHQR+DQNALTIWLDRTSGSGFKSV+PFRSGYFGA+IKLQPGYTAGVIT+ YLSNNEAHPG+HDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKI+GREMKF LWFDPTKDFHHYAILWSP+EIIFLVDD+PIRRYP+KS +TFP+RPMWLYGSIWDASSWATEDGKYKADYKYQPF A+YTNFKA GCTA++ C+P+SASPY SGGLT QQ++AMRWVQ + + YNYC+D KRDH LTPECW Sbjct: 37 KVGSLNFYKGFRNLWGPQHQRMDQNALTIWLDRTSGSGFKSVKPFRSGYFGANIKLQPGYTAGVITSLYLSNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIIGREMKFRLWFDPTKDFHHYAILWSPREIIFLVDDIPIRRYPKKSASTFPLRPMWLYGSIWDASSWATEDGKYKADYKYQPFTAKYTNFKALGCTAYSSARCYPLSASPYRSGGLTRQQHQAMRWVQTHSMVYNYCKDYKRDHSLTPECW 298
BLAST of Ca_07973.1 vs. DB:Swiss
Match: XTH31_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 31 OS=Arabidopsis thaliana OX=3702 GN=XTH31 PE=1 SV=2) HSP 1 Score: 371.318 bits (952), Expect = 4.736e-129 Identity = 174/255 (68.24%), Postives = 209/255 (81.96%), Query Frame = 1 Query: 76 FYKGFTNLWGPQHQRIDQNALTIWLDRTSGSGFKSVRPFRSGYFGASIKLQPGYTAGVITAFYLSNNEAHPGYHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIVGREMKFHLWFDPTKDFHHYAILWSPKEIIFLVDDVPIRRYPRKSDATFPIRPMWLYGSIWDASSWATEDGKYKADYKYQPFVARYTNFKASGCTAFAPLWCHPVSASPYGSGGLTSQQYRAMRWVQRYQLAYNYCQDPKRDHRLTPEC 840 F + F LWG QHQR +Q+ +T+WLD+++GSGFKS+RP+RSGYFGASIKLQPG+TAGV T+ YLSNN+ HPG HDEVDIEFLGTT GKPY+LQTNV++RGSGD ++GREMKF LWFDPT+DFHHYAILW+P +I+F VDDVPIR Y RK++A FP RPMW+YGSIWDAS WATE+G+ KADY+YQPFVA+Y NFK +GCTA + C P S +P + GL+ QQ A+ W QR L YNYC DPKRDH TPEC Sbjct: 39 FDREFRTLWGSQHQRREQDVVTLWLDKSTGSGFKSLRPYRSGYFGASIKLQPGFTAGVDTSLYLSNNQEHPGDHDEVDIEFLGTTPGKPYSLQTNVFVRGSGDRNVIGREMKFTLWFDPTQDFHHYAILWNPNQIVFFVDDVPIRTYNRKNEAIFPTRPMWVYGSIWDASDWATENGRIKADYRYQPFVAKYKNFKLAGCTADSSSSCRPPSPAPMRNRGLSRQQMAALTWAQRNFLVYNYCHDPKRDHTQTPEC 293
BLAST of Ca_07973.1 vs. DB:Swiss
Match: XTH15_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 15 OS=Arabidopsis thaliana OX=3702 GN=XTH15 PE=1 SV=1) HSP 1 Score: 212.231 bits (539), Expect = 1.620e-66 Identity = 118/268 (44.03%), Postives = 154/268 (57.46%), Query Frame = 1 Query: 73 NFYKGFTNLWGPQHQRI--DQNALTIWLDRTSGSGFKSVRPFRSGYFGASIKLQPGYTAGVITAFYLSNNEAHPGYHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIVGREMKFHLWFDPTKDFHHYAILWSPKEIIFLVDDVPIRRYPRKSDATFPI---RPMWLYGSIWDASSWATEDGKYKADYKYQPFVARYTNFKASGCTAFAPLWCHPVSASPYGSGG------LTSQQYRAMRWVQRYQLAYNYCQDPKRDHR-LTPEC 840 NF+ F WG +I N L++ LD+ SGSGFKS + + G +KL G +AG +TA+YLS+ A HDE+D EFLG GKPY L TNV+ +G GD RE +F+LWFDPTK+FH Y+I+W P+ IIFLVD++PIR + P +PM +Y S+W+A WAT G K D+ PF A Y F A+ CTA + C P S +G G L + R +RWVQ+Y + YNYC D KR R PEC Sbjct: 27 NFFDEFDLTWGDHRGKIFNGGNMLSLSLDQVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGAT---HDEIDFEFLGNETGKPYVLHTNVFAQGKGD-----REQQFYLWFDPTKNFHTYSIVWRPQHIIFLVDNLPIRVFNNAEKLGVPFPKSQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRGFNAAACTASSG--CDPKFKSSFGDGKLQVATELNAYGRRRLRWVQKYFMIYNYCSDLKRFPRGFPPEC 284
BLAST of Ca_07973.1 vs. DB:Swiss
Match: XTH30_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 30 OS=Arabidopsis thaliana OX=3702 GN=XTH30 PE=2 SV=2) HSP 1 Score: 213.001 bits (541), Expect = 4.264e-66 Identity = 117/272 (43.01%), Postives = 162/272 (59.56%), Query Frame = 1 Query: 61 FNSINFYKGFTNLWGPQH--QRIDQNALTIWLDRTSGSGFKSVRPFRSGYFGASIKLQPGYTAGVITAFYLSNNEAHPGYHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIVGREMKFHLWFDPTKDFHHYAILWSPKEIIFLVDDVPIRRYPRKS--DATFPIRPMWLYGSIWDASSWATEDGKYKADYKYQPFVARYTNFKASGCTA----FAPLWCHP----VSASPYGSGGLTSQQYRAMRWVQRYQLAYNYCQDPKRDHRLTPEC 840 N+++F + + L+G + + D ++ + LDR +GSGF S ++ G++ + IKL YTAGV+ AFY SN + HDE+DIEFLG GKP+ QTN+Y GS GRE ++ LWFDP+K+FH Y+ILW+P +IIF VDDVPIR R A +P +PM LY +IWDAS WAT GKYKA+YK+ PFVA + +F GC+ P+ C + + Y S + S Q AMR ++ + Y+YC D R PEC Sbjct: 27 LNTLSFEESLSPLFGDANLVRSPDDLSVRLLLDRYTGSGFISSNMYQHGFYSSMIKLPADYTAGVVVAFYTSNGDVFEKTHDELDIEFLGNIKGKPWRFQTNLYGNGSTHR---GREERYRLWFDPSKEFHRYSILWTPHKIIFWVDDVPIREVIRNDAMGADYPAKPMALYATIWDASDWATSGGKYKANYKFAPFVAEFKSFSLDGCSVDPIQEVPMDCSDSVDFLESQDYSS--INSHQRAAMRRFRQRFMYYSYCYDTLRYPEPLPEC 293
BLAST of Ca_07973.1 vs. DB:Swiss
Match: XTH_TOBAC (Probable xyloglucan endotransglucosylase/hydrolase protein OS=Nicotiana tabacum OX=4097 GN=XTH PE=2 SV=1) HSP 1 Score: 204.912 bits (520), Expect = 1.252e-63 Identity = 113/268 (42.16%), Postives = 150/268 (55.97%), Query Frame = 1 Query: 70 INFYKGFTNLWGPQHQRIDQNALTI--WLDRTSGSGFKSVRPFRSGYFGASIKLQPGYTAGVITAFYLSNNEAHPGYHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIVGREMKFHLWFDPTKDFHHYAILWSPKEIIFLVDDVPIRRYPRKSD--ATFPI-RPMWLYGSIWDASSWATEDGKYKADYKYQPFVARYTNFKASGCTAFAPLWCHPVSASPY------GSGGLTSQQYRAMRWVQRYQLAYNYCQDPKRDHRLTPEC 840 + F+K + W H + T+ LDR+SG+GF+S + + G+F +KL G +AGV+TAFYLS+N A HDE+D EFLG G+PY LQTNV+ G GD RE + +LWFDPTK +H Y++LW+ +I+ VDDVPIR + D FP +PM +Y S+WDA WAT G K D+ PF A YT+F GC A P + L + QYR +RWV++ YNYC D KR L PEC Sbjct: 30 VPFWKNYEPSWASHHIKYLSGGSTVDLVLDRSSGAGFQSKKSYLFGHFSMKLKLVGGDSAGVVTAFYLSSNNAE---HDEIDFEFLGNRTGQPYILQTNVFTGGKGD-----REQRIYLWFDPTKGYHSYSVLWNTFQIVIFVDDVPIRAFKNSKDLGVKFPFNQPMKIYSSLWDADDWATRGGLEKTDWSNAPFTASYTSFHVDGCEAATPQEVQVCNTKGMRWWDQKAFQDLDALQYRRLRWVRQKYTIYNYCTDRKRYPTLPPEC 289
BLAST of Ca_07973.1 vs. DB:Swiss
Match: XTH33_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 33 OS=Arabidopsis thaliana OX=3702 GN=XTH33 PE=2 SV=2) HSP 1 Score: 205.297 bits (521), Expect = 1.328e-63 Identity = 105/278 (37.77%), Postives = 156/278 (56.12%), Query Frame = 1 Query: 58 KFNSINFYKGFTNLWGPQHQRIDQNALTIWLDRTSGSGFKSVRPFRSGYFGASIKLQPGYTAGVITAFYLSNNEAHPGYHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIVGREMKFHLWFDPTKDFHHYAILWSPKEIIFLVDDVPIRRYPRKSDAT--FPIRPMWLYGSIWDASSWATEDGKYKADYKYQPFVARYTNFKASGC-------TAFAPLW--------CHPVSASPYGSGGLTSQQYRAMRWVQRYQLAYNYCQDPKRDHRLTPEC 840 +F+ I GF+ +G + +++ + + LD++SG+G S + G+F A +KL G+ +GV+ AFYLSN E +P HDE+DIE LG + +T+QTNVY GS GRE KF+ WFDPT+ FH Y ++W+ +FLVD++P+R++P + T +P +PM LY ++WD S WAT+ GKY +YKY PFV + + SGC T P PV + + L+ Q AM W +R + Y+YC D R + EC Sbjct: 37 QFSKIAIENGFSRRFGAHNIQVNGSLAKLTLDKSSGAGLVSKNKYHYGFFSARLKLPAGFASGVVVAFYLSNAETYPKSHDEIDIELLGRSRRDDWTIQTNVYANGSTR---TGREEKFYFWFDPTQAFHDYTLIWNSHHTVFLVDNIPVRQFPNRGAFTSAYPSKPMSLYVTVWDGSEWATKGGKYPVNYKYAPFVVSVADVELSGCSVNNGSSTGSGPCTKSGGSISSLDPVDGQDFAT--LSKNQINAMDWARRKLMFYSYCSDKPRYKVMPAEC 309
BLAST of Ca_07973.1 vs. DB:Swiss
Match: XTH28_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana OX=3702 GN=XTH28 PE=2 SV=1) HSP 1 Score: 206.068 bits (523), Expect = 1.669e-63 Identity = 110/269 (40.89%), Postives = 156/269 (57.99%), Query Frame = 1 Query: 58 KFNSINFYKGFTNLWGPQHQRI--DQNALTIWLDRTSGSGFKSVRPFRSGYFGASIKLQPGYTAGVITAFYLSNNEAHPGYHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIVGREMKFHLWFDPTKDFHHYAILWSPKEIIFLVDDVPIRRYPRKSD--ATFPIRPMWLYGSIWDASSWATEDGKYKADYKYQPFVARYTNFKASGC----TAFAPLWCHPVSASPYGSGGLTSQQYRAMRWVQRYQLAYNYCQDPKRDHRLTPEC 840 K I F +G+T L+G Q+ + D ++ + LD +GSGF S + G+F +SIKL Y+AGV+ AFYLSN + + HDE+D EFLG G+ + +QTN+Y GS +GRE +++LWFDPT+DFH Y+ILWS IIF VD+VPIR R + FP +PM LY +IWD S WAT+ GKY +YKY P+V+++T+ GC T P + + +T Q M ++ + Y+YC D R + EC Sbjct: 25 KLPLIQFDEGYTQLFGDQNLIVHRDGKSVRLTLDERTGSGFVSNDIYLHGFFSSSIKLPADYSAGVVIAFYLSNGDLYEKNHDEIDFEFLGNIRGREWRIQTNIYGNGSTH---LGREERYNLWFDPTEDFHQYSILWSLSHIIFYVDNVPIREVKRTASMGGDFPAKPMSLYSTIWDGSKWATDGGKYGVNYKYAPYVSQFTDLILHGCAVDPTEKFPSCKDEAVQNLRLASEITESQRNKMEIFRQKHMTYSYCYDHMRYKVVLSEC 290
BLAST of Ca_07973.1 vs. DB:Swiss
Match: XTH27_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 27 OS=Arabidopsis thaliana OX=3702 GN=XTH27 PE=2 SV=2) HSP 1 Score: 200.29 bits (508), Expect = 3.102e-61 Identity = 108/265 (40.75%), Postives = 154/265 (58.11%), Query Frame = 1 Query: 73 NFYKGFTNLWGPQHQRIDQN--ALTIWLDRTSGSGFKSVRPFRSGYFGASIKLQPGYTAGVITAFYLSNNEAHPGYHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIVGREMKFHLWFDPTKDFHHYAILWSPKEIIFLVDDVPIRRYPRKSD--ATFPIRPMWLYGSIWDASSWATEDGKYKADYKYQPFVARYTNFKASGCTAFAPLWCHP-----VSASPYGSGGLTSQQYRAMRWVQRYQLAYNYCQDPKRDHRLTPEC 840 +F + +T L+G ++ + Q+ ++ + LD +GSGF S + G+F ASIKL YTAGV+ AFY+SN + + HDE+D EFLG K + +QTN+Y GS GRE +++LWFDPT+DFH Y+ILWS IIF VD+VPIR R ++ FP +PM LY +IWD S WAT GKY +YKY P++AR+++ GC P+ P + + +T Q M +R + Y+YC D R + EC Sbjct: 30 SFEESYTQLFGDKNLFVHQDGKSVRLTLDERTGSGFVSNDYYLHGFFSASIKLPSDYTAGVVVAFYMSNGDMYEKNHDEIDFEFLGNIREKEWRVQTNIYGNGSTHS---GREERYNLWFDPTEDFHQYSILWSDSHIIFFVDNVPIREVKRTAEMGGHFPSKPMSLYTTIWDGSKWATNGGKYGVNYKYAPYIARFSDLVLHGCPV-DPIEQFPRCDEGAAEDMRAAQEITPSQRSKMDVFRRRLMTYSYCYDRARYNVALSEC 290
BLAST of Ca_07973.1 vs. DB:Swiss
Match: XTH16_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 16 OS=Arabidopsis thaliana OX=3702 GN=XTH16 PE=2 SV=2) HSP 1 Score: 197.978 bits (502), Expect = 5.634e-61 Identity = 111/271 (40.96%), Postives = 152/271 (56.09%), Query Frame = 1 Query: 67 SINFYKGFTNLWGPQHQRI--DQNALTIWLDRTSGSGFKSVRPFRSGYFGASIKLQPGYTAGVITAFYLSNNEAHPGYHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIVGREMKFHLWFDPTKDFHHYAILWSPKEIIFLVDDVPIRRYPRKSDATFPI---RPMWLYGSIWDASSWATEDGKYKADYKYQPFVARYTNFKASGCTAFA-PLWCHPVSASPYGSG------GLTSQQYRAMRWVQRYQLAYNYCQDPKR-DHRLTPEC 840 S +F + F WG +I L++ LDR SGSGFKS + + G +KL G +AG +TA+YLS+ HDE+D EFLG GKPY L TNV+ +G G+ RE +F+LWFDPTK+FH Y+++W P+ IIF+VD+VPIR + P +PM +Y S+W+A WAT G K D+ PF A Y F A+ CT + +C P S + +G L + R +RWVQ+Y + Y+YC D KR PEC Sbjct: 24 SGSFNEEFDLTWGEHRGKIFSGGKMLSLSLDRVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSEGPT---HDEIDFEFLGNETGKPYVLHTNVFAQGKGN-----REQQFYLWFDPTKNFHTYSLVWRPQHIIFMVDNVPIRVFNNAEQLGVPFPKNQPMKIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRGFNAAACTVSSGSSFCDPKFKSSFTNGESQVANELNAYGRRRLRWVQKYFMIYDYCSDLKRFPQGFPPEC 286
BLAST of Ca_07973.1 vs. DB:Swiss
Match: XTH1_SOLLC (Probable xyloglucan endotransglucosylase/hydrolase 1 OS=Solanum lycopersicum OX=4081 GN=XTH1 PE=2 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 7.977e-60 Identity = 108/268 (40.30%), Postives = 147/268 (54.85%), Query Frame = 1 Query: 70 INFYKGFTNLWGPQHQRIDQNALT--IWLDRTSGSGFKSVRPFRSGYFGASIKLQPGYTAGVITAFYLSNNEAHPGYHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIVGREMKFHLWFDPTKDFHHYAILWSPKEIIFLVDDVPIRRYPRKSD--ATFPI-RPMWLYGSIWDASSWATEDGKYKADYKYQPFVARYTNFKASGCTAFAPLWCHPVSASPY------GSGGLTSQQYRAMRWVQRYQLAYNYCQDPKRDHRLTPEC 840 + F+K + W H + T + LDR+SG+GF+S + + G+F ++L G +AGV+TAFYLS+N A HDE+D EFLG G+PY LQTNV+ G G+ RE + +LWFDPTK +H Y++LW+ I+ VDDVPIR + D FP +PM +Y S+WDA WAT G K ++ PF A YT+F GC A P + L + QYR +RWV++ YNYC D R PEC Sbjct: 31 VPFWKNYEPSWASHHIKFLNGGTTTDLILDRSSGAGFQSKKSYLFGHFSMKMRLVGGDSAGVVTAFYLSSNNAE---HDEIDFEFLGNRTGQPYILQTNVFTGGKGN-----REQRIYLWFDPTKGYHSYSVLWNTYLIVIFVDDVPIRAFKNSKDLGVKFPFNQPMKIYSSLWDADDWATRGGLEKTNWANAPFTASYTSFHVDGCEAATPQEVQVCNTKGMKWWDQKAFQDLDALQYRRLRWVRQKYTVYNYCTDKARYPVPPPEC 290 The following BLAST results are available for this feature:
BLAST of Ca_07973.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: C. arietinum ICC 4958, v2.0 (desi)
Date Performed: 2019-05-21
Sequences
The
following sequences are available for this feature:
mRNA sequence >Ca_07973.1_ICC4958_v2 ID=Ca_07973.1_ICC4958_v2; Name=Ca_07973.1; organism=Cicer arietinum; type=mRNA; length=2012bpback to top protein sequence of Ca_07973.1_ICC4958_v2 >Ca_07973.1_ICC4958_v2 ID=Ca_07973.1_ICC4958_v2; Name=Ca_07973.1_ICC4958_v2; organism=Cicer arietinum; type=polypeptide; length=282bpback to top mRNA from alignment at Ca_LG_3:41703594..41705605+ Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>Ca_07973.1_ICC4958_v2 ID=Ca_07973.1_ICC4958_v2; Name=Ca_07973.1; organism=Cicer arietinum; type=mRNA; length=2012bp; location=Sequence derived from: Ca_LG_3:41703594..41705605+ (Cicer arietinumback to top Coding sequence (CDS) from alignment at Ca_LG_3:41703594..41705605+ >Ca_07973.1_ICC4958_v2 ID=Ca_07973.1_ICC4958_v2; Name=Ca_07973.1; organism=Cicer arietinum; type=CDS; length=849bp; location=Sequence derived from: Ca_LG_3:41703594..41705605+ (Cicer arietinumback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|