Ca_08382.1, Ca_08382.1_ICC4958_v2 (mRNA) Cicer arietinum

Transcript Overview
NameCa_08382.1
Unique NameCa_08382.1_ICC4958_v2
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length2669
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca_LG_4supercontigCa_LG_4:4815196..4817864 -Cicer arietinum ICC 4958 genome v2n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum ICC 4958 genome v22015-08-11
InterProScan: C. arietinum ICC 4958, v2.0 (desi)2019-05-21
BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot2019-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
caipsR324Pisum sativum Cameor genome v1aPisum sativum
caipvR0358Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caipvR0394Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caipvR0510Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caivuR0473Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caivuR0489Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caivuR0509Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caiccR0484Cajanus cajan Asha genome v1.0Cajanus cajan
caiccR0513Cajanus cajan Asha genome v1.0Cajanus cajan
ancaiL0361Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiL0426Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiL0877Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiL1124Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaiL649Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaiL891Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaiL903Vigna angularis Jingnong 6 genome v1.1Vigna angularis
caizwsR366Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
caizwsR413Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
caitifR341Vicia faba cv. Tiffany genome v1.0Vicia faba
caivfhR335Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
caitifR425Vicia faba cv. Tiffany genome v1.0Vicia faba
caitifR445Vicia faba cv. Tiffany genome v1.0Vicia faba
caivfhR444Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
caivrvR361Vigna radiata cv. VC1973A genome v6.0Vigna radiata
caivrvR384Vigna radiata cv. VC1973A genome v6.0Vigna radiata
caivssR0437Vicia sativa cv. Studenica genome v1.0Vicia sativa
caivssR0457Vicia sativa cv. Studenica genome v1.0Vicia sativa
caivuaR453Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
caivuaR462Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
caivuaR463Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
caicanR0481Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
caicanR0489Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
Vfaba.Hedin2.R1.2g179800.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vigun08g045000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Psat05G0112700-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vigun09g215600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-KK1_034299Cajanus cajan Asha genome v1.0Cajanus cajan
rna-TanjilR_30693Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Phvul.001G041900.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vfaba.Tiffany.R1.3g171680.1Vicia faba cv. Tiffany genome v1.0Vicia faba
LR48_mrnaVigan07g249600Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vfaba.Tiffany.R1.2g145600.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-TanjilR_01267Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
evm.model.Chr09.1563Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
jg55297.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
LR48_mrnaVigan04g226000Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-XM_022780893.1Vigna radiata cv. VC1973A genome v6.0Vigna radiata
evm.model.Chr08.298Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Psat06G0070800-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
rna-XM_014647991.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Phvul.009G087200.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-XM_004501327.2Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
rna-XM_004498754.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Ca_08382Ca_08382_ICC4958_v2Cicer arietinumgene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_08382.1.cds5Ca_08382.1.cds5_ICC4958_v2Cicer arietinumCDS
Ca_08382.1.cds4Ca_08382.1.cds4_ICC4958_v2Cicer arietinumCDS
Ca_08382.1.cds3Ca_08382.1.cds3_ICC4958_v2Cicer arietinumCDS
Ca_08382.1.cds2Ca_08382.1.cds2_ICC4958_v2Cicer arietinumCDS
Ca_08382.1.cds1Ca_08382.1.cds1_ICC4958_v2Cicer arietinumCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_08382.1.exon5Ca_08382.1.exon5_ICC4958_v2Cicer arietinumexon
Ca_08382.1.exon4Ca_08382.1.exon4_ICC4958_v2Cicer arietinumexon
Ca_08382.1.exon3Ca_08382.1.exon3_ICC4958_v2Cicer arietinumexon
Ca_08382.1.exon2Ca_08382.1.exon2_ICC4958_v2Cicer arietinumexon
Ca_08382.1.exon1Ca_08382.1.exon1_ICC4958_v2Cicer arietinumexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_08382.1_ICC4958_v2Ca_08382.1_ICC4958_v2Cicer arietinumpolypeptide


Homology
[Close]
BLAST of Ca_08382.1 vs. DB:Swiss
Match: CM2_ARATH (Chorismate mutase 2 OS=Arabidopsis thaliana OX=3702 GN=CM2 PE=1 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 8.009e-99
Identity = 144/251 (57.37%), Postives = 180/251 (71.71%), Query Frame = 1 
Query:   43 NEYTIESVRASLVRQEDTIVFGLIERARFPINSPTYNQLNVSIPNFNGSLFDFILNQTEAIQAKTGRYINPEENPY-TENLPPSVVPHYNFSKFLHPTTAVININERIKKAYLNEMLPLFVASGDDGNYAQTAASDLSLLQAISRRIHYGKLAAETKFRASPREYEPLIHAQDREGLMKLFTVKSVEEIIQKRVRKKAMVFGQEVSHDS----EVSRKYKVDPTIVSRLYQNWIIPLTKVVEVEYLLRRLD 780
            N  +++ +R SL+RQEDTIVF LIERA+FP+NSP + +          SL +F + +TE IQAK GRY  PEENP+  EN+P SV P + +   LHP    +NIN++I   Y  E+LPLFV  GDDGNY  TAASDL+ LQA+SRRIHYGK  AE KFR +P++YEP I AQDRE LMKL T + VEE+++KRV+KKA  FGQEV  +S    E  +KYKVDP + SR+Y  W+IPLTK+VEVEYLLRRLD
Sbjct:   15 NVLSLDLIRESLIRQEDTIVFSLIERAKFPLNSPAFEESRCLDSGSFSSLTEFFVRETEIIQAKVGRYEYPEENPFFLENIPHSVFPTHKYPSALHPKALSVNINKQIWDIYFKELLPLFVKPGDDGNYPSTAASDLACLQALSRRIHYGKFVAEVKFRDAPQDYEPAIRAQDREALMKLLTFEKVEEMVKKRVQKKAETFGQEVKFNSGYGDESKKKYKVDPLLASRIYGEWLIPLTKLVEVEYLLRRLD 265
[Close]
BLAST of Ca_08382.1 vs. DB:Swiss
Match: CM1_ARATH (Chorismate mutase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CM1 PE=1 SV=3)

HSP 1 Score: 239.965 bits (611), Expect = 5.145e-77
Identity = 115/254 (45.28%), Postives = 162/254 (63.78%), Query Frame = 1 
Query:   52 TIESVRASLVRQEDTIVFGLIERARFPINSPTYNQLNVSIPNFNGSLFDFILNQTEAIQAKTGRYINPEENPY-TENLPPSVVPHYNFSKFLHPTTAVININERIKKAYLNEMLPLFVASGDDGNYAQTAASDLSLLQAISRRIHYGKLAAETKFRASPREYEPLIHAQDREGLMKLFTVKSVEEIIQKRVRKKAMVFGQEVS----------HDSEVSRKYKVDPTIVSRLYQNWIIPLTKVVEVEYLLRRLD 780
            T+E +R SL+RQED+I+FGL+ERA++  N+ TY+     +  FNGSL ++++  TE + AK GR+ +P+E+P+  ++LP  ++P   + K LH     ININ++I   Y  +++P  V  GDDGNY  TA  D   LQ +S+RIHYGK  AE KF+ASP  YE  I AQD++ LM + T  +VE+ I+KRV  K   +GQEV            +   S  YK+ P +V  LY +WI+PLTK V+VEYLLRRLD
Sbjct:   87 TLEGIRNSLIRQEDSIIFGLLERAKYCYNADTYDPTAFDMDGFNGSLVEYMVKGTEKLHAKVGRFKSPDEHPFFPDDLPEPMLPPLQYPKVLHFAADSININKKIWNMYFRDLVPRLVKKGDDGNYGSTAVCDAICLQCLSKRIHYGKFVAEAKFQASPEAYESAIKAQDKDALMDMLTFPTVEDAIKKRVEMKTRTYGQEVKVGMEEKEEEEEEGNESHVYKISPILVGDLYGDWIMPLTKEVQVEYLLRRLD 340
[Close]
BLAST of Ca_08382.1 vs. DB:Swiss
Match: CM3_ARATH (Chorismate mutase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CM3 PE=1 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 6.307e-73
Identity = 111/254 (43.70%), Postives = 168/254 (66.14%), Query Frame = 1 
Query:   34 MSENEY-TIESVRASLVRQEDTIVFGLIERARFPINSPTYNQLNVSIPNFNGSLFDFILNQTEAIQAKTGRYINPEENPY-TENLPPSVVPHYNFSKFLHPTTAVININERIKKAYLNEMLPLFVASGDDGNYAQTAASDLSLLQAISRRIHYGKLAAETKFRASPREYEPLIHAQDREGLMKLFTVKSVEEIIQKRVRKKAMVFGQEVS---HDSEVSRKYKVDPTIVSRLYQNWIIPLTKVVEVEYLLRRLD 780
            + E+EY  +ES+R SL+RQED+I+F L+ERA++  N+ TY++   ++  F GSL +F++ +TE + AK  RY +P+E+P+  + LP  ++P   + + LH     ININ+++   Y   +LP  V  GDDGN    A  D   LQ +S+RIH+GK  AE KFR +P  YE  I  QDR  LM+L T ++VEE+++KRV  KA +FGQ+++    ++E    YK+ P++V++LY   I+PLTK V++EYLLRRLD
Sbjct:   63 VDESEYLKLESIRHSLIRQEDSIIFNLLERAQYRYNADTYDEDAFTMEGFQGSLVEFMVRETEKLHAKVDRYKSPDEHPFFPQCLPEPILPPIQYPQVLHRCAESININKKVWNMYFKHLLPRLVKPGDDGNCGSAALCDTMCLQILSKRIHFGKFVAEAKFRENPAAYETAIKEQDRTQLMQLLTYETVEEVVKKRVEIKARIFGQDITINDPETEADPSYKIQPSLVAKLYGERIMPLTKEVQIEYLLRRLD 316
[Close]
BLAST of Ca_08382.1 vs. DB:Swiss
Match: CHMU_SCHPO (Probable chorismate mutase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC16E8.04c PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.485e-58
Identity = 95/245 (38.78%), Postives = 159/245 (64.90%), Query Frame = 1 
Query:   55 IESVRASLVRQEDTIVFGLIERARFPINSPTYN---QLNVSIPNFNGSLFDFILNQTEAIQAKTGRYINPEENPYTENLPPSVVPHYNFSKFLHPTTAVININERIKKAYLNEMLPLFVASGDD-GNYAQTAASDLSLLQAISRRIHYGKLAAETKFRASPREYEPLIHAQDREGLMKLFTVKSVEEIIQKRVRKKAMVFGQEVSHDSEVSRKYKVDPTIVSRLYQNWIIPLTKVVEVEYLLRRL 777
            +E++R++L+RQEDTI+F  +ERA+FP N   Y    +  +++ N++GS  +++L++ E + A   RY +PEE P+T+NLP  ++P ++    LHP    +N+N  I + Y+NE++P   + GDD  NY  T   D+  LQ++SRRIHYGK  AE K+ A+P +Y+ LI A+D +G+       + EE + KR+  KA+ +G++ +  ++ S +   D   V+ +Y++++IP+TK VEV+YLL RL
Sbjct:   10 LENIRSALIRQEDTIIFNFLERAQFPRNEKVYKSGKEGCLNLENYDGSFLNYLLHEEEKVYALVRRYASPEEYPFTDNLPEPILPKFSGKFPLHPNN--VNVNSEILEYYINEIVPKISSPGDDFDNYGSTVVCDIRCLQSLSRRIHYGKFVAEAKYLANPEKYKKLILARDIKGIENEIVDAAQEERVLKRLHYKALNYGRDAADPTKPSDRINAD--CVASIYKDYVIPMTKKVEVDYLLARL 250
[Close]
BLAST of Ca_08382.1 vs. DB:Swiss
Match: CHMU_YEAST (Chorismate mutase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=ARO7 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 4.856e-53
Identity = 96/247 (38.87%), Postives = 150/247 (60.73%), Query Frame = 1 
Query:   55 IESVRASLVRQEDTIVFGLIERARFPINSPTY--NQLNVSIPNFNGSLFDFILNQTEAIQAKTGRYINPEENPY-TENLPPSVVPHYNFSKFLHPTTAVININERIKKAYLNEMLPLFVA-SGDD-GNYAQTAASDLSLLQAISRRIHYGKLAAETKFRASPREYEPLIHAQDREGLMKLFTVKSVEEIIQKRVRKKAMVFGQEVSHDSEVSRKYKVDPTIVSRLYQNWIIPLTKVVEVEYLLRRLD 780
            ++++R  LVR ED+I+F  IER+ F      Y  N   + IPNF GS  D+ L+  E   ++  R+ +P+E P+  + +  S +P  N+ + L P    +N N++IKK Y+ +++PL     GDD  N+   A  D+  LQ++SRRIH+GK  AE KF++    Y  LI ++D EG+MK  T  +VEE I +R+ KKA V+G + +++S   R   + P  + ++Y+  +IP+TK VEVEYLLRRL+
Sbjct:   12 LQNIRDELVRMEDSIIFKFIERSHFATCPSVYEANHPGLEIPNFKGSFLDWALSNLEIAHSRIRRFESPDETPFFPDKIQKSFLPSINYPQILAPYAPEVNYNDKIKKVYIEKIIPLISKRDGDDKNNFGSVATRDIECLQSLSRRIHFGKFVAEAKFQSDIPLYTKLIKSKDVEGIMKNITNSAVEEKILERLTKKAEVYGVDPTNESGERR---ITPEYLVKIYKEIVIPITKEVEVEYLLRRLE 255
The following BLAST results are available for this feature:
BLAST of Ca_08382.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot)
Total hits: 5
Match NameE-valueIdentityDescription
CM2_ARATH8.009e-9957.37Chorismate mutase 2 OS=Arabidopsis thaliana OX=370... [more]
CM1_ARATH5.145e-7745.28Chorismate mutase 1, chloroplastic OS=Arabidopsis ... [more]
CM3_ARATH6.307e-7343.70Chorismate mutase 3, chloroplastic OS=Arabidopsis ... [more]
CHMU_SCHPO1.485e-5838.78Probable chorismate mutase OS=Schizosaccharomyces ... [more]
CHMU_YEAST4.856e-5338.87Chorismate mutase OS=Saccharomyces cerevisiae (str... [more]
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InterPro
Analysis Name: InterProScan: C. arietinum ICC 4958, v2.0 (desi)
Date Performed: 2019-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR037039Chorismate mutase, AroQ class superfamily, eukaryoticGENE3D1.10.590.10coord: 11..260
e-value: 5.8E-94
score: 316.1
IPR008238Chorismate mutase, AroQ class, eukaryotic typeTIGRFAMTIGR01802TIGR01802coord: 18..260
e-value: 5.6E-82
score: 273.0
IPR008238Chorismate mutase, AroQ class, eukaryotic typePIRSFPIRSF017318Chor_mut_AroQ_eucoord: 6..260
e-value: 5.6E-97
score: 320.5
IPR008238Chorismate mutase, AroQ class, eukaryotic typePANTHERPTHR21145CHORISMATE MUTASEcoord: 11..260
IPR008238Chorismate mutase, AroQ class, eukaryotic typePROSITEPS51169CHORISMATE_MUT_3coord: 10..260
score: 80.861
NoneNo IPR availablePANTHERPTHR21145:SF5coord: 11..260
IPR036263Chorismate mutase type II superfamilySUPERFAMILY48600Chorismate mutase IIcoord: 15..260

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_08382.1_ICC4958_v2 ID=Ca_08382.1_ICC4958_v2; Name=Ca_08382.1; organism=Cicer arietinum; type=mRNA; length=2669bp
ATGGTTGTGTCGGTAATGGTGAAAGGAGATATTATGTCTGAGAATGAATA
CACGATAGAATCAGTGAGAGCGTCTTTAGTTAGACAAGAAGACACCATTG
TATTTGGTCTAATTGAGAGAGCCAGGTTCCCCATCAATTCTCCAACATAC
AATCAACTTAATGTTTCCATTCCTAATTTTAATGGTTCGTTGTTCGACTT
CATTCTTAACCAAACAGAGGCCATTCAAGCCAAGGTAGTTAGTTGCCTTG
CTTCACATCTTATTTTCCTATATGTGACTATTTTTTATTTATTATTATAA
ATTAATGACGATTTGTTATGGTATCAGACTGGAAGATACATCAACCCCGA
AGAAAATCCCTATACAGAAAATTTACCACCCTCAGTTGTGCCACATTACA
ACTTCTCAAAGGTAATGATTTGACACTTTGAGTAGTTCAATCGTATTAAT
TAGGGGAAAATGTGGATGATCTCTTTTGAACTTTGTCTTTAGTTTTTGCA
TCCTACAACCGCTGTGATTAACATAAACGAGCGCATAAAGAAAGCGTATT
TGAACGAGATGCTTCCACTTTTTGTTGCTTCCGGGGATGATGGCAACTAT
GCACAAACTGCAGCTAGTGATCTTTCATTATTGCAGGTAAAATTTCCAGT
CCAAGTTCTTATTATTATAGAGTAGTCGTATATGCCTGTGTCTGTGTGAC
AAGTTTTATGCAACTTCACATGTACTTAATTAAAAATTGTGCAAAACACC
AACCTCGATGTGGCTATTTAAATTTTGAAACTGGGGATTTTTTGTCTTTA
CCACAACAATTATATTTTATTATTGTTGATATAATATAATAAAATAAAAT
AAAGATAAATAATATTGAGTTTTAATTAGAGAACGTTAAATTTTATTTAT
ACAAAATCAACTTAGATAATTTTCAAATATTAATCTATGAGAGACTATAG
AACTTGTCTTAAATTATTATAATAAGATAAGTTATCATTCTACTAATTCT
TACATAAAACCGTAAAATTATGAAATAAATAAATTATCATTCTTTTAAAG
TTAAATTATATTTGTTGTCTTTTAAATTGTTTATGTGTCTCGCGATGGTT
TTGTTTAATTTTAACTTCTTAAGTTATAAATATTATTTAATTTGATCCCT
CAGATTACTTTTTTCTATTTTAGTTTATTAAATTATAAATATTAAATATT
TTGATCTCTTAAGTTATAAACGCGTTCTGGTCATTTTTTATAGTGTCTAA
CATTGTAATTTAAGGAATTAAAATCTATAAATTTTTAACTTAAGAGATCA
AAATCTTTAATATTTATAATTTATGAGACTAAAATGAAATGAAATCTAAA
ATATCTAATATTTGTGACTTAAGAGATTAAAATAAAATGAATAAAACTTA
AGAAATTAAAATAAATAAAAATGCAATTTAGCTTTCTTTTAATTACAACT
TAAGTCAACAAATAAAAATGAAGGATAAATTTTTCCTTGTGTTTTACATC
AAATAAATAAATGTTGGTTTTGGCTTATGAAAATTTATTCTCATTCTATT
AAATATTCACAGGCAATCTCTAGAAGGATTCATTATGGAAAGTTGGCAGC
TGAGACGAAGTTTAGGGCATCTCCTCGTGAATATGAGCCTTTAATTCATG
CTCAGGTATATATATAATGATCGCATTCTTGACCATATTTGTAGCTAGTA
AATGACTATTATGGAGGTGAAATTATTTTAAATGGGATGAAGTAATAAGG
TGAGTTGGTGATTTTTAATATATATATAAAAATTAAAATGATTCAACTCG
TCTCATTAGCAAAAAAAACTGTTGTTATTATTTTAAAATAATGGAATCTC
AAAACATTGTTCTTTTATTTCTATAAAATATTTTATTAGGCTTTGTTCGA
GAGTTTGAAGACGAAGGAGAAATAATTTAGAAGGAGAGGAAGAGAGCAAA
ATAAAGAGCAACTTCTAATCTTATCTGAGAGAGTAATTTAGTTCCTTTAA
ATTAAGAGGATTTTGTATAATAAAGAAAAATAGACTCATCCAAAGTGTTG
GGTCATGATAAGGTTCATGAGATAATCACATTGGATTAAGAGCAAACACA
TTAGTGAGTTTGGACACTATATAGTCACTCAAAATCTTAAAGCATGAGGT
ATATAGGTCTTCTCACTTATATATTATTCAACGTTCAATTTTCTTTCCAA
TGTGGAATTCATACTCACACTTAACACCAACAATTTCTCCCCTCCCAAAT
GCCTACTCCTTCCACTTCCTTTTTTCCAAATACCTATCATCTCCTCTTAA
ATTGCCAAAAAAAGCCTTAGTGGTAATTATTTTTGCAATGTTACTGATTG
TTATTATATGATCATTTTTTCATTGTTGTACTTGGTTTTTATGCCACGTT
ATTTGTGTAAAGTTGAAACAATAAGTGGTTTGTTTTTGCAGGATAGGGAA
GGATTGATGAAATTGTTTACAGTAAAAAGCGTAGAAGAGATAATTCAAAA
AAGGGTTCGAAAGAAGGCCATGGTGTTTGGTCAAGAAGTGAGTCATGACT
CCGAAGTCAGTAGAAAATACAAGGTTGATCCAACAATAGTTTCTCGCTTG
TACCAAAATTGGATAATACCCCTCACAAAAGTTGTTGAAGTAGAGTACTT
ACTACGACGTCTTGACTAA
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protein sequence of Ca_08382.1_ICC4958_v2

>Ca_08382.1_ICC4958_v2 ID=Ca_08382.1_ICC4958_v2; Name=Ca_08382.1_ICC4958_v2; organism=Cicer arietinum; type=polypeptide; length=260bp
MVVSVMVKGDIMSENEYTIESVRASLVRQEDTIVFGLIERARFPINSPTY
NQLNVSIPNFNGSLFDFILNQTEAIQAKTGRYINPEENPYTENLPPSVVP
HYNFSKFLHPTTAVININERIKKAYLNEMLPLFVASGDDGNYAQTAASDL
SLLQAISRRIHYGKLAAETKFRASPREYEPLIHAQDREGLMKLFTVKSVE
EIIQKRVRKKAMVFGQEVSHDSEVSRKYKVDPTIVSRLYQNWIIPLTKVV
EVEYLLRRLD
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mRNA from alignment at Ca_LG_4:4815196..4817864-

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_08382.1_ICC4958_v2 ID=Ca_08382.1_ICC4958_v2; Name=Ca_08382.1; organism=Cicer arietinum; type=mRNA; length=2669bp; location=Sequence derived from: Ca_LG_4:4815196..4817864- (Cicer arietinum
ATGGTTGTGTCGGTAATGGTGAAAGGAGATATTATGTCTGAGAATGAATA
CACGATAGAATCAGTGAGAGCGTCTTTAGTTAGACAAGAAGACACCATTG
TATTTGGTCTAATTGAGAGAGCCAGGTTCCCCATCAATTCTCCAACATAC
AATCAACTTAATGTTTCCATTCCTAATTTTAATGGTTCGTTGTTCGACTT
CATTCTTAACCAAACAGAGGCCATTCAAGCCAAGGTAGTTAGTTGCCTTG
CTTCACATCTTATTTTCCTATATGTGACTATTTTTTATTTATTATTATAA
ATTAATGACGATTTGTTATGGTATCAGACTGGAAGATACATCAACCCCGA
AGAAAATCCCTATACAGAAAATTTACCACCCTCAGTTGTGCCACATTACA
ACTTCTCAAAGGTAATGATTTGACACTTTGAGTAGTTCAATCGTATTAAT
TAGGGGAAAATGTGGATGATCTCTTTTGAACTTTGTCTTTAGTTTTTGCA
TCCTACAACCGCTGTGATTAACATAAACGAGCGCATAAAGAAAGCGTATT
TGAACGAGATGCTTCCACTTTTTGTTGCTTCCGGGGATGATGGCAACTAT
GCACAAACTGCAGCTAGTGATCTTTCATTATTGCAGGTAAAATTTCCAGT
CCAAGTTCTTATTATTATAGAGTAGTCGTATATGCCTGTGTCTGTGTGAC
AAGTTTTATGCAACTTCACATGTACTTAATTAAAAATTGTGCAAAACACC
AACCTCGATGTGGCTATTTAAATTTTGAAACTGGGGATTTTTTGTCTTTA
CCACAACAATTATATTTTATTATTGTTGATATAATATAATAAAATAAAAT
AAAGATAAATAATATTGAGTTTTAATTAGAGAACGTTAAATTTTATTTAT
ACAAAATCAACTTAGATAATTTTCAAATATTAATCTATGAGAGACTATAG
AACTTGTCTTAAATTATTATAATAAGATAAGTTATCATTCTACTAATTCT
TACATAAAACCGTAAAATTATGAAATAAATAAATTATCATTCTTTTAAAG
TTAAATTATATTTGTTGTCTTTTAAATTGTTTATGTGTCTCGCGATGGTT
TTGTTTAATTTTAACTTCTTAAGTTATAAATATTATTTAATTTGATCCCT
CAGATTACTTTTTTCTATTTTAGTTTATTAAATTATAAATATTAAATATT
TTGATCTCTTAAGTTATAAACGCGTTCTGGTCATTTTTTATAGTGTCTAA
CATTGTAATTTAAGGAATTAAAATCTATAAATTTTTAACTTAAGAGATCA
AAATCTTTAATATTTATAATTTATGAGACTAAAATGAAATGAAATCTAAA
ATATCTAATATTTGTGACTTAAGAGATTAAAATAAAATGAATAAAACTTA
AGAAATTAAAATAAATAAAAATGCAATTTAGCTTTCTTTTAATTACAACT
TAAGTCAACAAATAAAAATGAAGGATAAATTTTTCCTTGTGTTTTACATC
AAATAAATAAATGTTGGTTTTGGCTTATGAAAATTTATTCTCATTCTATT
AAATATTCACAGGCAATCTCTAGAAGGATTCATTATGGAAAGTTGGCAGC
TGAGACGAAGTTTAGGGCATCTCCTCGTGAATATGAGCCTTTAATTCATG
CTCAGGTATATATATAATGATCGCATTCTTGACCATATTTGTAGCTAGTA
AATGACTATTATGGAGGTGAAATTATTTTAAATGGGATGAAGTAATAAGG
TGAGTTGGTGATTTTTAATATATATATAAAAATTAAAATGATTCAACTCG
TCTCATTAGCAAAAAAAACTGTTGTTATTATTTTAAAATAATGGAATCTC
AAAACATTGTTCTTTTATTTCTATAAAATATTTTATTAGGCTTTGTTCGA
GAGTTTGAAGACGAAGGAGAAATAATTTAGAAGGAGAGGAAGAGAGCAAA
ATAAAGAGCAACTTCTAATCTTATCTGAGAGAGTAATTTAGTTCCTTTAA
ATTAAGAGGATTTTGTATAATAAAGAAAAATAGACTCATCCAAAGTGTTG
GGTCATGATAAGGTTCATGAGATAATCACATTGGATTAAGAGCAAACACA
TTAGTGAGTTTGGACACTATATAGTCACTCAAAATCTTAAAGCATGAGGT
ATATAGGTCTTCTCACTTATATATTATTCAACGTTCAATTTTCTTTCCAA
TGTGGAATTCATACTCACACTTAACACCAACAATTTCTCCCCTCCCAAAT
GCCTACTCCTTCCACTTCCTTTTTTCCAAATACCTATCATCTCCTCTTAA
ATTGCCAAAAAAAGCCTTAGTGGTAATTATTTTTGCAATGTTACTGATTG
TTATTATATGATCATTTTTTCATTGTTGTACTTGGTTTTTATGCCACGTT
ATTTGTGTAAAGTTGAAACAATAAGTGGTTTGTTTTTGCAGGATAGGGAA
GGATTGATGAAATTGTTTACAGTAAAAAGCGTAGAAGAGATAATTCAAAA
AAGGGTTCGAAAGAAGGCCATGGTGTTTGGTCAAGAAGTGAGTCATGACT
CCGAAGTCAGTAGAAAATACAAGGTTGATCCAACAATAGTTTCTCGCTTG
TACCAAAATTGGATAATACCCCTCACAAAAGTTGTTGAAGTAGAGTACTT
ACTACGACGTCTTGACTAA
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Coding sequence (CDS) from alignment at Ca_LG_4:4815196..4817864-

>Ca_08382.1_ICC4958_v2 ID=Ca_08382.1_ICC4958_v2; Name=Ca_08382.1; organism=Cicer arietinum; type=CDS; length=783bp; location=Sequence derived from: Ca_LG_4:4815196..4817864- (Cicer arietinum
ATGGTTGTGTCGGTAATGGTGAAAGGAGATATTATGTCTGAGAATGAATA
CACGATAGAATCAGTGAGAGCGTCTTTAGTTAGACAAGAAGACACCATTG
TATTTGGTCTAATTGAGAGAGCCAGGTTCCCCATCAATTCTCCAACATAC
AATCAACTTAATGTTTCCATTCCTAATTTTAATGGTTCGTTGTTCGACTT
CATTCTTAACCAAACAGAGGCCATTCAAGCCAAGACTGGAAGATACATCA
ACCCCGAAGAAAATCCCTATACAGAAAATTTACCACCCTCAGTTGTGCCA
CATTACAACTTCTCAAAGTTTTTGCATCCTACAACCGCTGTGATTAACAT
AAACGAGCGCATAAAGAAAGCGTATTTGAACGAGATGCTTCCACTTTTTG
TTGCTTCCGGGGATGATGGCAACTATGCACAAACTGCAGCTAGTGATCTT
TCATTATTGCAGGCAATCTCTAGAAGGATTCATTATGGAAAGTTGGCAGC
TGAGACGAAGTTTAGGGCATCTCCTCGTGAATATGAGCCTTTAATTCATG
CTCAGGATAGGGAAGGATTGATGAAATTGTTTACAGTAAAAAGCGTAGAA
GAGATAATTCAAAAAAGGGTTCGAAAGAAGGCCATGGTGTTTGGTCAAGA
AGTGAGTCATGACTCCGAAGTCAGTAGAAAATACAAGGTTGATCCAACAA
TAGTTTCTCGCTTGTACCAAAATTGGATAATACCCCTCACAAAAGTTGTT
GAAGTAGAGTACTTACTACGACGTCTTGACTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR037039CM_AroQ_sf_eucaryotic
IPR008238Chorismate_mutase_AroQ_euk
IPR036263Chorismate_II_sf
Vocabulary: Molecular Function
TermDefinition
GO:0004106chorismate mutase activity
Vocabulary: Biological Process
TermDefinition
GO:0009073aromatic amino acid family biosynthetic process
GO:0046417chorismate metabolic process