Ca_08775.1, Ca_08775.1_ICC4958_v2 (mRNA) Cicer arietinum

Transcript Overview
NameCa_08775.1
Unique NameCa_08775.1_ICC4958_v2
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length2366
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca_LG_4supercontigCa_LG_4:9371676..9374041 +Cicer arietinum ICC 4958 genome v2n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum ICC 4958 genome v22015-08-11
InterProScan: C. arietinum ICC 4958, v2.0 (desi)2019-05-21
BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot2019-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
caipsR354Pisum sativum Cameor genome v1aPisum sativum
caipsR369Pisum sativum Cameor genome v1aPisum sativum
caipvR0371Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caipvR0514Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caivuR0478Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caiccR0461Cajanus cajan Asha genome v1.0Cajanus cajan
caiccR0511Cajanus cajan Asha genome v1.0Cajanus cajan
ancaiL0124Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiL0880Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaiL256Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaiL896Vigna angularis Jingnong 6 genome v1.1Vigna angularis
caizwsR433Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
caitifR345Vicia faba cv. Tiffany genome v1.0Vicia faba
caitifR370Vicia faba cv. Tiffany genome v1.0Vicia faba
caivfhR340Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
caivfhR365Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
caivrvR364Vigna radiata cv. VC1973A genome v6.0Vigna radiata
caivssR0443Vicia sativa cv. Studenica genome v1.0Vicia sativa
caivssR0477Vicia sativa cv. Studenica genome v1.0Vicia sativa
caivssR0520Vicia sativa cv. Studenica genome v1.0Vicia sativa
caivuaR444Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
caivuaR476Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
caicanR0403Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
Psat6g009640.1Pisum sativum Cameor genome v1aPisum sativum
Phvul.009G060800.4Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Ca_08775Ca_08775_ICC4958_v2Cicer arietinumgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_08775.1_ICC4958_v2Ca_08775.1_ICC4958_v2Cicer arietinumpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_08775.1.exon1Ca_08775.1.exon1_ICC4958_v2Cicer arietinumexon
Ca_08775.1.exon2Ca_08775.1.exon2_ICC4958_v2Cicer arietinumexon
Ca_08775.1.exon3Ca_08775.1.exon3_ICC4958_v2Cicer arietinumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_08775.1.cds1Ca_08775.1.cds1_ICC4958_v2Cicer arietinumCDS
Ca_08775.1.cds2Ca_08775.1.cds2_ICC4958_v2Cicer arietinumCDS
Ca_08775.1.cds3Ca_08775.1.cds3_ICC4958_v2Cicer arietinumCDS


Homology
The following BLAST results are available for this feature:
BLAST of Ca_08775.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: C. arietinum ICC 4958, v2.0 (desi)
Date Performed: 2019-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 264..322
e-value: 4.2E-4
score: 29.6
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 264..322
score: 10.409
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 244..324
e-value: 6.9E-10
score: 40.5
NoneNo IPR availablePANTHERPTHR31150FAMILY NOT NAMEDcoord: 1..425
NoneNo IPR availablePANTHERPTHR31150:SF25coord: 1..425
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 263..324

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_08775.1_ICC4958_v2 ID=Ca_08775.1_ICC4958_v2; Name=Ca_08775.1; organism=Cicer arietinum; type=mRNA; length=2366bp
ATGGGTTCAGCTTGTTGTGTTGCTGCAAAAGATCGTAGAGATCTTGAAAG
TGTGCATAGAGATGTTGTATGTTCGCCATCATGGAGCTTTCGATGGGATA
GTCGGGGGCGTGTTACTGGTGAAATTGAGAATCCTTCCTATCACACGTCT
CATGTAGTAAGCAGAAATCTCAGCATGGAGTTTAAAGGCTCATTAAGTAC
TGAAAGAGGTAATTTATCTGATGGGGGAAGCATCCTGGACAATTCTGCAA
CTCCTGTTTCCCTGAAGTCTCCTGTCGACGAGGCATTGGCTGCAAATATG
ATGACACCATCTTCTGGTAAATGCTTAACTCTAAACTCCCATTCTTTTTG
GCCTTCACCACTAAGATAATGATAGGAATAGTTTATATCCAGTAGAGGGA
GATTATATTACTATATGAACTGAAGTGTTATTGCAGAAGAAAATAAGAGT
CAAAGCTTCCAGTTTTGGAGGAAACTCCTAGCCCAAGGTGCATGCTCCAA
AACAAAAAGATGATATGTTCCTTATGTGAACCCTCGGGATCCATATACAA
CCATTCTCCCCCTAACTAACTCTTCATTCAAAACACATTCTCTCTCCTTA
ACTGCTTTTCCCTATATTTGCTGCCTTAGGCCTATGGGAATAGACTTGTA
GGATCTTGAGCTTATGTTTGTATTTGGGCAACCCATCCATCACATAATGT
TTGGTGCGTCTTAGTCGGAGGTTAGACTTACTTTTGGTTATATAAAAGGA
GATACAGCAATTACAATAGTTTAAATCCTATCTCCTGTTTGTGAAAACCT
TTTGCAGACAGCAATTATTCCATGAGAAAATACTCCTCTGCTACGCTTAG
CCAACCTTGTCATTAAAGCACTTTAAGTATGCTTATCCAAAAATTGAAGT
CGACCAATATTTATACTAACGCAACAAGAATGAACACTAACCATTAAGTA
TATAACGAGACTATGTTTATAATTACTATCACGATTGGGTAGGTTTTTTT
ATATTTTATGAAGAATGAAAAACTTTGCTTTTCCGGGCATATGTGCATGG
GATCTCGATCTTACATGTCTTCTTTACATCGTGTGTTGCTTTGTTTGTGG
CTTTTTCTTTTGCTATTTCCTATCTAGAGTAAGGTTTTTGAACTTGGTTC
ATTTTGTTGAATGGTCCTAGATATTGTTTATCGACATTCAGTTCCTGATG
CTTATGCACTATTGTTCCTTGGTTGTTGTTTCCATGTTTGGCATTGATTT
TTCTTTTTTTCTTCCTCTATGTGCTTGTTGCAGATCTGTCCATGTCAAGC
AATTTTTCTACAGTGGTTAGTTTTGATCAACTGATTCGGGACCATAAACT
TTATGTTGCACAGTGTGATTTTTAGGCTTTGTACTATAGTACCGGGCTCA
CTCTTAATCTGTATTTCTCTTTAGGTGAAGAATCCGGGAGAATCTTCAAT
ACCAAATCATTCATTTTCAATACCTTCAGTTTTCTCAACACCTACACCGG
ATCCTTTATCTAATCATGATTATCATCATCTTTCCAATTCTACCCCAACT
AGATGGGCACATCGATCTCTGGGGCACCCACTGTTGAGACAGATTTCTGA
TAATCAGATCATGGGTCTGAAATCACCAGACAGCTCAATTTTTGAAGGAA
GGGTGTCATTTGTACTCTCCACTTGCAGCAATGAAATTGAAGCTGGATCA
CAATGTGGATCGTCTGATGGCTGGTCGATGCACACCTCCGAGCTGGTTGC
CTCCTGGCAAAGGGGGAGGTGGTCTTTTGACAGTGAGTGTTTAGGCTCGG
GCCGTCACAAGATAAGTGGATCTAGTAGCAGGTTGTCATATTCACCTTCC
ATGGATCTACAATCTTGTGCGGCTTGCTCTAAGCTTTTGTCTGAGAGATC
GGCATGGAACAGCCAGAAGTTTATTGCCAACGGTGACCTCTCAGTTGTTG
CTGTACTGGTCTGTGGTCATGCATATCATGCAGAATGCTTAGAGACTATG
ACCGCAGAAGCAGATAGCTATGATCCATCTTGTCCAATTTGTATGGTTGG
TGGCGATAAGAACTTTTCAAAGTTGCCCAGAAAAGGTCAGACTGAATCAG
AGATTAAAACCAAAAACCTCAAGATATCCAGAAATCGTGTAGTTGATAGC
TACCTTGATGGTGGTTTTGATGTTTTTGATCGCCAAAAAGATGTTGAACC
GGAAGGAAAAGTTTCGAAGATGGAGGCTAGCTCGAGTGTGAGGAGCTCAG
TTGGTAAGCCCTTTTTGAGGAAGCACTTTTCACTTGGTTCAAAGTGGAAC
CGAGCTCTGTCTGAGAATGATTCAGCCAGGAAGAAAGGCTTTTGGGCAAG
ATATCGAAAAGATTGA
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protein sequence of Ca_08775.1_ICC4958_v2

>Ca_08775.1_ICC4958_v2 ID=Ca_08775.1_ICC4958_v2; Name=Ca_08775.1_ICC4958_v2; organism=Cicer arietinum; type=polypeptide; length=429bp
MGSACCVAAKDRRDLESVHRDVVCSPSWSFRWDSRGRVTGEIENPSYHTS
HVVSRNLSMEFKGSLSTERGNLSDGGSILDNSATPVSLKSPVDEALAANM
MTPSSDLSMSSNFSTVVKNPGESSIPNHSFSIPSVFSTPTPDPLSNHDYH
HLSNSTPTRWAHRSLGHPLLRQISDNQIMGLKSPDSSIFEGRVSFVLSTC
SNEIEAGSQCGSSDGWSMHTSELVASWQRGRWSFDSECLGSGRHKISGSS
SRLSYSPSMDLQSCAACSKLLSERSAWNSQKFIANGDLSVVAVLVCGHAY
HAECLETMTAEADSYDPSCPICMVGGDKNFSKLPRKGQTESEIKTKNLKI
SRNRVVDSYLDGGFDVFDRQKDVEPEGKVSKMEASSSVRSSVGKPFLRKH
FSLGSKWNRALSENDSARKKGFWARYRKD
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mRNA from alignment at Ca_LG_4:9371676..9374041+

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_08775.1_ICC4958_v2 ID=Ca_08775.1_ICC4958_v2; Name=Ca_08775.1; organism=Cicer arietinum; type=mRNA; length=2366bp; location=Sequence derived from: Ca_LG_4:9371676..9374041+ (Cicer arietinum
ATGGGTTCAGCTTGTTGTGTTGCTGCAAAAGATCGTAGAGATCTTGAAAG
TGTGCATAGAGATGTTGTATGTTCGCCATCATGGAGCTTTCGATGGGATA
GTCGGGGGCGTGTTACTGGTGAAATTGAGAATCCTTCCTATCACACGTCT
CATGTAGTAAGCAGAAATCTCAGCATGGAGTTTAAAGGCTCATTAAGTAC
TGAAAGAGGTAATTTATCTGATGGGGGAAGCATCCTGGACAATTCTGCAA
CTCCTGTTTCCCTGAAGTCTCCTGTCGACGAGGCATTGGCTGCAAATATG
ATGACACCATCTTCTGGTAAATGCTTAACTCTAAACTCCCATTCTTTTTG
GCCTTCACCACTAAGATAATGATAGGAATAGTTTATATCCAGTAGAGGGA
GATTATATTACTATATGAACTGAAGTGTTATTGCAGAAGAAAATAAGAGT
CAAAGCTTCCAGTTTTGGAGGAAACTCCTAGCCCAAGGTGCATGCTCCAA
AACAAAAAGATGATATGTTCCTTATGTGAACCCTCGGGATCCATATACAA
CCATTCTCCCCCTAACTAACTCTTCATTCAAAACACATTCTCTCTCCTTA
ACTGCTTTTCCCTATATTTGCTGCCTTAGGCCTATGGGAATAGACTTGTA
GGATCTTGAGCTTATGTTTGTATTTGGGCAACCCATCCATCACATAATGT
TTGGTGCGTCTTAGTCGGAGGTTAGACTTACTTTTGGTTATATAAAAGGA
GATACAGCAATTACAATAGTTTAAATCCTATCTCCTGTTTGTGAAAACCT
TTTGCAGACAGCAATTATTCCATGAGAAAATACTCCTCTGCTACGCTTAG
CCAACCTTGTCATTAAAGCACTTTAAGTATGCTTATCCAAAAATTGAAGT
CGACCAATATTTATACTAACGCAACAAGAATGAACACTAACCATTAAGTA
TATAACGAGACTATGTTTATAATTACTATCACGATTGGGTAGGTTTTTTT
ATATTTTATGAAGAATGAAAAACTTTGCTTTTCCGGGCATATGTGCATGG
GATCTCGATCTTACATGTCTTCTTTACATCGTGTGTTGCTTTGTTTGTGG
CTTTTTCTTTTGCTATTTCCTATCTAGAGTAAGGTTTTTGAACTTGGTTC
ATTTTGTTGAATGGTCCTAGATATTGTTTATCGACATTCAGTTCCTGATG
CTTATGCACTATTGTTCCTTGGTTGTTGTTTCCATGTTTGGCATTGATTT
TTCTTTTTTTCTTCCTCTATGTGCTTGTTGCAGATCTGTCCATGTCAAGC
AATTTTTCTACAGTGGTTAGTTTTGATCAACTGATTCGGGACCATAAACT
TTATGTTGCACAGTGTGATTTTTAGGCTTTGTACTATAGTACCGGGCTCA
CTCTTAATCTGTATTTCTCTTTAGGTGAAGAATCCGGGAGAATCTTCAAT
ACCAAATCATTCATTTTCAATACCTTCAGTTTTCTCAACACCTACACCGG
ATCCTTTATCTAATCATGATTATCATCATCTTTCCAATTCTACCCCAACT
AGATGGGCACATCGATCTCTGGGGCACCCACTGTTGAGACAGATTTCTGA
TAATCAGATCATGGGTCTGAAATCACCAGACAGCTCAATTTTTGAAGGAA
GGGTGTCATTTGTACTCTCCACTTGCAGCAATGAAATTGAAGCTGGATCA
CAATGTGGATCGTCTGATGGCTGGTCGATGCACACCTCCGAGCTGGTTGC
CTCCTGGCAAAGGGGGAGGTGGTCTTTTGACAGTGAGTGTTTAGGCTCGG
GCCGTCACAAGATAAGTGGATCTAGTAGCAGGTTGTCATATTCACCTTCC
ATGGATCTACAATCTTGTGCGGCTTGCTCTAAGCTTTTGTCTGAGAGATC
GGCATGGAACAGCCAGAAGTTTATTGCCAACGGTGACCTCTCAGTTGTTG
CTGTACTGGTCTGTGGTCATGCATATCATGCAGAATGCTTAGAGACTATG
ACCGCAGAAGCAGATAGCTATGATCCATCTTGTCCAATTTGTATGGTTGG
TGGCGATAAGAACTTTTCAAAGTTGCCCAGAAAAGGTCAGACTGAATCAG
AGATTAAAACCAAAAACCTCAAGATATCCAGAAATCGTGTAGTTGATAGC
TACCTTGATGGTGGTTTTGATGTTTTTGATCGCCAAAAAGATGTTGAACC
GGAAGGAAAAGTTTCGAAGATGGAGGCTAGCTCGAGTGTGAGGAGCTCAG
TTGGTAAGCCCTTTTTGAGGAAGCACTTTTCACTTGGTTCAAAGTGGAAC
CGAGCTCTGTCTGAGAATGATTCAGCCAGGAAGAAAGGCTTTTGGGCAAG
ATATCGAAAAGATTGA
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Coding sequence (CDS) from alignment at Ca_LG_4:9371676..9374041+

>Ca_08775.1_ICC4958_v2 ID=Ca_08775.1_ICC4958_v2; Name=Ca_08775.1; organism=Cicer arietinum; type=CDS; length=1290bp; location=Sequence derived from: Ca_LG_4:9371676..9374041+ (Cicer arietinum
ATGGGTTCAGCTTGTTGTGTTGCTGCAAAAGATCGTAGAGATCTTGAAAG
TGTGCATAGAGATGTTGTATGTTCGCCATCATGGAGCTTTCGATGGGATA
GTCGGGGGCGTGTTACTGGTGAAATTGAGAATCCTTCCTATCACACGTCT
CATGTAGTAAGCAGAAATCTCAGCATGGAGTTTAAAGGCTCATTAAGTAC
TGAAAGAGGTAATTTATCTGATGGGGGAAGCATCCTGGACAATTCTGCAA
CTCCTGTTTCCCTGAAGTCTCCTGTCGACGAGGCATTGGCTGCAAATATG
ATGACACCATCTTCTGATCTGTCCATGTCAAGCAATTTTTCTACAGTGGT
GAAGAATCCGGGAGAATCTTCAATACCAAATCATTCATTTTCAATACCTT
CAGTTTTCTCAACACCTACACCGGATCCTTTATCTAATCATGATTATCAT
CATCTTTCCAATTCTACCCCAACTAGATGGGCACATCGATCTCTGGGGCA
CCCACTGTTGAGACAGATTTCTGATAATCAGATCATGGGTCTGAAATCAC
CAGACAGCTCAATTTTTGAAGGAAGGGTGTCATTTGTACTCTCCACTTGC
AGCAATGAAATTGAAGCTGGATCACAATGTGGATCGTCTGATGGCTGGTC
GATGCACACCTCCGAGCTGGTTGCCTCCTGGCAAAGGGGGAGGTGGTCTT
TTGACAGTGAGTGTTTAGGCTCGGGCCGTCACAAGATAAGTGGATCTAGT
AGCAGGTTGTCATATTCACCTTCCATGGATCTACAATCTTGTGCGGCTTG
CTCTAAGCTTTTGTCTGAGAGATCGGCATGGAACAGCCAGAAGTTTATTG
CCAACGGTGACCTCTCAGTTGTTGCTGTACTGGTCTGTGGTCATGCATAT
CATGCAGAATGCTTAGAGACTATGACCGCAGAAGCAGATAGCTATGATCC
ATCTTGTCCAATTTGTATGGTTGGTGGCGATAAGAACTTTTCAAAGTTGC
CCAGAAAAGGTCAGACTGAATCAGAGATTAAAACCAAAAACCTCAAGATA
TCCAGAAATCGTGTAGTTGATAGCTACCTTGATGGTGGTTTTGATGTTTT
TGATCGCCAAAAAGATGTTGAACCGGAAGGAAAAGTTTCGAAGATGGAGG
CTAGCTCGAGTGTGAGGAGCTCAGTTGGTAAGCCCTTTTTGAGGAAGCAC
TTTTCACTTGGTTCAAAGTGGAACCGAGCTCTGTCTGAGAATGATTCAGC
CAGGAAGAAAGGCTTTTGGGCAAGATATCGAAAAGATTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD