Ca_08942.1, Ca_08942.1_ICC4958_v2 (mRNA) Cicer arietinum

Transcript Overview
NameCa_08942.1
Unique NameCa_08942.1_ICC4958_v2
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length780
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca_LG_4supercontigCa_LG_4:11418279..11419058 -Cicer arietinum ICC 4958 genome v2n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum ICC 4958 genome v22015-08-11
InterProScan: C. arietinum ICC 4958, v2.0 (desi)2019-05-21
BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot2019-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
caipsR310Pisum sativum Cameor genome v1aPisum sativum
caipsR363Pisum sativum Cameor genome v1aPisum sativum
caipsR371Pisum sativum Cameor genome v1aPisum sativum
caipvR0365Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caipvR0435Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caipvR0466Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caivuR0352Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caivuR0398Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caiccR0393Cajanus cajan Asha genome v1.0Cajanus cajan
caiccR0409Cajanus cajan Asha genome v1.0Cajanus cajan
caiccR0481Cajanus cajan Asha genome v1.0Cajanus cajan
ancaiL0212Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiL0709Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiL0991Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiL1082Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiL1402Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaiL475Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaiL481Vigna angularis Jingnong 6 genome v1.1Vigna angularis
caizwsR343Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
caizwsR427Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
caitifR349Vicia faba cv. Tiffany genome v1.0Vicia faba
caivfhR345Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
caitifR465Vicia faba cv. Tiffany genome v1.0Vicia faba
caivfhR465Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
caivrvR339Vigna radiata cv. VC1973A genome v6.0Vigna radiata
caivrvR405Vigna radiata cv. VC1973A genome v6.0Vigna radiata
caivrvR438Vigna radiata cv. VC1973A genome v6.0Vigna radiata
caivssR0448Vicia sativa cv. Studenica genome v1.0Vicia sativa
caivssR0523Vicia sativa cv. Studenica genome v1.0Vicia sativa
caivuaR329Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
caivuaR371Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
caicanR0366Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
caicanR0376Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
Vfaba.Hedin2.R1.3g056360.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-TanjilR_28338Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
jg32326.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigun07g089100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
LR48_mrnaVigan02g144600Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Psat06G0176200-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vigun01g148800.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
jg1698.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vfaba.Hedin2.R1.5g129040.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-TanjilR_27258Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vfaba.Tiffany.R1.5g103680.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-KK1_009990Cajanus cajan Asha genome v1.0Cajanus cajan
Psat6g064280.1Pisum sativum Cameor genome v1aPisum sativum
evm.model.Chr01.1442Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vfaba.Tiffany.R1.3g046480.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Psat3g053120.1Pisum sativum Cameor genome v1aPisum sativum
rna-XM_014640092.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-XM_014657533.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Phvul.007G154400.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Phvul.001G167300.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-KK1_002263Cajanus cajan Asha genome v1.0Cajanus cajan

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-XM_004494988.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
rna-XM_027332988.1Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Ca_08942Ca_08942_ICC4958_v2Cicer arietinumgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_08942.1_ICC4958_v2Ca_08942.1_ICC4958_v2Cicer arietinumpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_08942.1.utr3p1Ca_08942.1.utr3p1_ICC4958_v2Cicer arietinumthree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_08942.1.cds2Ca_08942.1.cds2_ICC4958_v2Cicer arietinumCDS
Ca_08942.1.cds1Ca_08942.1.cds1_ICC4958_v2Cicer arietinumCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_08942.1.exon2Ca_08942.1.exon2_ICC4958_v2Cicer arietinumexon
Ca_08942.1.exon1Ca_08942.1.exon1_ICC4958_v2Cicer arietinumexon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_08942.1.utr5p1Ca_08942.1.utr5p1_ICC4958_v2Cicer arietinumfive_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Ca_08942.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: C. arietinum ICC 4958, v2.0 (desi)
Date Performed: 2019-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008579Domain of unknown function DUF861, cupin-3PFAMPF05899Cupin_3coord: 23..96
e-value: 7.0E-27
score: 92.9
IPR014710RmlC-like jelly roll foldGENE3D2.60.120.10coord: 2..98
e-value: 3.8E-33
score: 115.2
NoneNo IPR availablePANTHERPTHR33271:SF19coord: 1..102
NoneNo IPR availablePANTHERPTHR33271FAMILY NOT NAMEDcoord: 1..102
IPR011051RmlC-like cupin domain superfamilySUPERFAMILY51182RmlC-like cupinscoord: 28..96

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_08942.1_ICC4958_v2 ID=Ca_08942.1_ICC4958_v2; Name=Ca_08942.1; organism=Cicer arietinum; type=mRNA; length=780bp
GGTTTTGCTGTTGTCAACTTTTTCCATCACACCCTTTTCAAAAACACTAC
TGCTTAATTTGTTTCCATGGCTGAAGATTCCAATTCAAACCTTAGAATCA
GCATAGAAAGCAATCCTACAGAGTCACGCCTAGCTGAATTGAACATCAAG
TGCTGGCCCAAGTATGCTTTATATTTTTTTCTCTTATTTTTTTTTATTTC
TTTTAGACCCTTCATTTTTTTTATTAATTTAGGTTCATAACATGCATAAA
GAAATATTAAAAAAATTTGATCTTTTTGTTTAAAAGATAAATTTTTTATT
TCTGGTCTTTAATTGTTTGATTTTGATTTTCTTTTTCTTTATGGGGGGTG
TGTATTGCAAAAAAAATGAAAGATGGGGGTGTTCTCCAGGGAAATATCAG
TTAAAATTTGATGCAGAAGAGACATGCTATTTGTTGAAAGGAAAGGTAAA
AGCATACACAAAAGGGTCATCAGATTTTGTAGAGTTTGGTGCTGGAGATC
TTGTGACAATTCCTAAAGGACTGAGTTGTACTTGGGATGTTTCTGTTGCT
GTGGATAAGTACTACAAATTTGAGGCTTCATCTTCTTCAACATACTAATT
AATTAACTTCTTAATCAGTGTCATAATCATAATTGTTATGATTAATTTAG
ATGTAGAAGCTTTTTTTCATTTATGGAATTTATATTCTTTTCTTTCACAA
TTTTGCCTATTATGTGGAAGACTTGGGTGGTTGGTTTTTTGTTATGTGGG
GAAAGTGGCAGTTTTAGTCAAAGGAGGAAC
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protein sequence of Ca_08942.1_ICC4958_v2

>Ca_08942.1_ICC4958_v2 ID=Ca_08942.1_ICC4958_v2; Name=Ca_08942.1_ICC4958_v2; organism=Cicer arietinum; type=polypeptide; length=106bp
MAEDSNSNLRISIESNPTESRLAELNIKCWPKWGCSPGKYQLKFDAEETC
YLLKGKVKAYTKGSSDFVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFEA
SSSSTY
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mRNA from alignment at Ca_LG_4:11418279..11419058-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_08942.1_ICC4958_v2 ID=Ca_08942.1_ICC4958_v2; Name=Ca_08942.1; organism=Cicer arietinum; type=mRNA; length=780bp; location=Sequence derived from: Ca_LG_4:11418279..11419058- (Cicer arietinum
GGTTTTGCTGTTGTCAACTTTTTCCATCACACCCTTTTCAAAAACACTAC
TGCTTAATTTGTTTCCATGGCTGAAGATTCCAATTCAAACCTTAGAATCA
GCATAGAAAGCAATCCTACAGAGTCACGCCTAGCTGAATTGAACATCAAG
TGCTGGCCCAAGTATGCTTTATATTTTTTTCTCTTATTTTTTTTTATTTC
TTTTAGACCCTTCATTTTTTTTATTAATTTAGGTTCATAACATGCATAAA
GAAATATTAAAAAAATTTGATCTTTTTGTTTAAAAGATAAATTTTTTATT
TCTGGTCTTTAATTGTTTGATTTTGATTTTCTTTTTCTTTATGGGGGGTG
TGTATTGCAAAAAAAATGAAAGATGGGGGTGTTCTCCAGGGAAATATCAG
TTAAAATTTGATGCAGAAGAGACATGCTATTTGTTGAAAGGAAAGGTAAA
AGCATACACAAAAGGGTCATCAGATTTTGTAGAGTTTGGTGCTGGAGATC
TTGTGACAATTCCTAAAGGACTGAGTTGTACTTGGGATGTTTCTGTTGCT
GTGGATAAGTACTACAAATTTGAGGCTTCATCTTCTTCAACATACTAATT
AATTAACTTCTTAATCAGTGTCATAATCATAATTGTTATGATTAATTTAG
ATGTAGAAGCTTTTTTTCATTTATGGAATTTATATTCTTTTCTTTCACAA
TTTTGCCTATTATGTGGAAGACTTGGGTGGTTGGTTTTTTGTTATGTGGG
GAAAGTGGCAGTTTTAGTCAAAGGAGGAAC
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Coding sequence (CDS) from alignment at Ca_LG_4:11418279..11419058-

>Ca_08942.1_ICC4958_v2 ID=Ca_08942.1_ICC4958_v2; Name=Ca_08942.1; organism=Cicer arietinum; type=CDS; length=321bp; location=Sequence derived from: Ca_LG_4:11418279..11419058- (Cicer arietinum
ATGGCTGAAGATTCCAATTCAAACCTTAGAATCAGCATAGAAAGCAATCC
TACAGAGTCACGCCTAGCTGAATTGAACATCAAGTGCTGGCCCAAATGGG
GGTGTTCTCCAGGGAAATATCAGTTAAAATTTGATGCAGAAGAGACATGC
TATTTGTTGAAAGGAAAGGTAAAAGCATACACAAAAGGGTCATCAGATTT
TGTAGAGTTTGGTGCTGGAGATCTTGTGACAATTCCTAAAGGACTGAGTT
GTACTTGGGATGTTTCTGTTGCTGTGGATAAGTACTACAAATTTGAGGCT
TCATCTTCTTCAACATACTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR008579UGlyAH_Cupin_dom
IPR014710RmlC-like_jellyroll
IPR011051RmlC_Cupin_sf