Ca_09021.1, Ca_09021.1_ICC4958_v2 (mRNA) Cicer arietinum
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Ca_09021.1 vs. DB:Swiss
Match: H2AV3_ORYSJ (Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0743400 PE=2 SV=1) HSP 1 Score: 209.92 bits (533), Expect = 4.202e-70 Identity = 103/109 (94.50%), Postives = 106/109 (97.25%), Query Frame = 1 Query: 76 PTSRSSRAGIQFPVGRIHRQLKQRVQANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 402 P SRSSRAG+QFPVGRIHRQLKQR QANGRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK+SKE Sbjct: 29 PVSRSSRAGLQFPVGRIHRQLKQRTQANGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 137
BLAST of Ca_09021.1 vs. DB:Swiss
Match: H2AV2_ORYSJ (Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0418000 PE=2 SV=1) HSP 1 Score: 207.608 bits (527), Expect = 4.487e-69 Identity = 103/109 (94.50%), Postives = 105/109 (96.33%), Query Frame = 1 Query: 76 PTSRSSRAGIQFPVGRIHRQLKQRVQANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 402 P SRSSRAGIQFPVGRIHRQLK RV ANGRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKT+KE Sbjct: 31 PVSRSSRAGIQFPVGRIHRQLKGRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTAKE 139
BLAST of Ca_09021.1 vs. DB:Swiss
Match: H2AV1_ARATH (Histone H2A variant 1 OS=Arabidopsis thaliana OX=3702 GN=H2AV PE=1 SV=1) HSP 1 Score: 206.453 bits (524), Expect = 1.140e-68 Identity = 102/109 (93.58%), Postives = 105/109 (96.33%), Query Frame = 1 Query: 76 PTSRSSRAGIQFPVGRIHRQLKQRVQANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 402 P SRS+RAGIQFPVGRIHRQLK RV A+GRVGATAAVY ASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKT+KE Sbjct: 28 PISRSARAGIQFPVGRIHRQLKTRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKE 136
BLAST of Ca_09021.1 vs. DB:Swiss
Match: H2AV1_ORYSJ (Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0162200 PE=2 SV=1) HSP 1 Score: 204.142 bits (518), Expect = 8.951e-68 Identity = 101/109 (92.66%), Postives = 104/109 (95.41%), Query Frame = 1 Query: 76 PTSRSSRAGIQFPVGRIHRQLKQRVQANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 402 P SRSSRAG+QFPVGRIHRQLK R A+GRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE Sbjct: 30 PVSRSSRAGLQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 138
BLAST of Ca_09021.1 vs. DB:Swiss
Match: H2AV2_ARATH (Probable histone H2A variant 2 OS=Arabidopsis thaliana OX=3702 GN=At2g38810 PE=2 SV=1) HSP 1 Score: 203.371 bits (516), Expect = 1.567e-67 Identity = 100/107 (93.46%), Postives = 104/107 (97.20%), Query Frame = 1 Query: 82 SRSSRAGIQFPVGRIHRQLKQRVQANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 402 SRSSRAGIQFPVGRIHRQLKQRV A+GRVGATAAVY ASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSL+NK +K+ Sbjct: 30 SRSSRAGIQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLVNKVTKD 136
BLAST of Ca_09021.1 vs. DB:Swiss
Match: H2AV3_ARATH (Probable histone H2A variant 3 OS=Arabidopsis thaliana OX=3702 GN=At1g52740 PE=1 SV=1) HSP 1 Score: 194.512 bits (493), Expect = 4.292e-64 Identity = 95/109 (87.16%), Postives = 103/109 (94.50%), Query Frame = 1 Query: 76 PTSRSSRAGIQFPVGRIHRQLKQRVQANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 402 P +RSSRAG+QFPVGR+HR LK R A+GRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK++KE Sbjct: 26 PITRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSAKE 134
BLAST of Ca_09021.1 vs. DB:Swiss
Match: H2AV_STRPU (Histone H2A.V (Fragment) OS=Strongylocentrotus purpuratus OX=7668 GN=H2A.F/Z PE=1 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 4.598e-60 Identity = 90/103 (87.38%), Postives = 96/103 (93.20%), Query Frame = 1 Query: 82 SRSSRAGIQFPVGRIHRQLKQRVQANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 390 SRS+RAG+QFPVGRIHR LK R ++GRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K Sbjct: 16 SRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 118
BLAST of Ca_09021.1 vs. DB:Swiss
Match: H2AZ_SHEEP (Histone H2A.Z OS=Ovis aries OX=9940 GN=H2AFZ PE=2 SV=3) HSP 1 Score: 184.111 bits (466), Expect = 6.032e-60 Identity = 90/107 (84.11%), Postives = 97/107 (90.65%), Query Frame = 1 Query: 82 SRSSRAGIQFPVGRIHRQLKQRVQANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 402 SRS RAG+QFPVGRIHR LK R ++GRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K ++ Sbjct: 19 SRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
BLAST of Ca_09021.1 vs. DB:Swiss
Match: H2AZ_RAT (Histone H2A.Z OS=Rattus norvegicus OX=10116 GN=H2afz PE=1 SV=2) HSP 1 Score: 184.111 bits (466), Expect = 6.032e-60 Identity = 90/107 (84.11%), Postives = 97/107 (90.65%), Query Frame = 1 Query: 82 SRSSRAGIQFPVGRIHRQLKQRVQANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 402 SRS RAG+QFPVGRIHR LK R ++GRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K ++ Sbjct: 19 SRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
BLAST of Ca_09021.1 vs. DB:Swiss
Match: H2AZ_PONAB (Histone H2A.Z OS=Pongo abelii OX=9601 GN=H2AFZ PE=2 SV=3) HSP 1 Score: 184.111 bits (466), Expect = 6.032e-60 Identity = 90/107 (84.11%), Postives = 97/107 (90.65%), Query Frame = 1 Query: 82 SRSSRAGIQFPVGRIHRQLKQRVQANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 402 SRS RAG+QFPVGRIHR LK R ++GRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K ++ Sbjct: 19 SRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125 The following BLAST results are available for this feature:
BLAST of Ca_09021.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: C. arietinum ICC 4958, v2.0 (desi)
Date Performed: 2019-05-21
Sequences
The
following sequences are available for this feature:
mRNA sequence >Ca_09021.1_ICC4958_v2 ID=Ca_09021.1_ICC4958_v2; Name=Ca_09021.1; organism=Cicer arietinum; type=mRNA; length=1566bpback to top protein sequence of Ca_09021.1_ICC4958_v2 >Ca_09021.1_ICC4958_v2 ID=Ca_09021.1_ICC4958_v2; Name=Ca_09021.1_ICC4958_v2; organism=Cicer arietinum; type=polypeptide; length=134bpback to top mRNA from alignment at Ca_LG_4:12248339..12249904+ Legend: five_prime_UTRexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Ca_09021.1_ICC4958_v2 ID=Ca_09021.1_ICC4958_v2; Name=Ca_09021.1; organism=Cicer arietinum; type=mRNA; length=1566bp; location=Sequence derived from: Ca_LG_4:12248339..12249904+ (Cicer arietinumback to top Coding sequence (CDS) from alignment at Ca_LG_4:12248339..12249904+ >Ca_09021.1_ICC4958_v2 ID=Ca_09021.1_ICC4958_v2; Name=Ca_09021.1; organism=Cicer arietinum; type=CDS; length=405bp; location=Sequence derived from: Ca_LG_4:12248339..12249904+ (Cicer arietinumback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|