Ca_09021.1, Ca_09021.1_ICC4958_v2 (mRNA) Cicer arietinum

Transcript Overview
NameCa_09021.1
Unique NameCa_09021.1_ICC4958_v2
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length1566
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca_LG_4supercontigCa_LG_4:12248339..12249904 +Cicer arietinum ICC 4958 genome v2n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum ICC 4958 genome v22015-08-11
InterProScan: C. arietinum ICC 4958, v2.0 (desi)2019-05-21
BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot2019-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
caipsR310Pisum sativum Cameor genome v1aPisum sativum
caipsR331Pisum sativum Cameor genome v1aPisum sativum
caipvR0365Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caipvR0458Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caivuR0352Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caivuR0397Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caiccR0397Cajanus cajan Asha genome v1.0Cajanus cajan
caiccR0460Cajanus cajan Asha genome v1.0Cajanus cajan
ancaiL0802Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiL1007Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiL1082Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiL1319Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiL1402Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaiL507Vigna angularis Jingnong 6 genome v1.1Vigna angularis
caizwsR343Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
caizwsR370Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
caitifR349Vicia faba cv. Tiffany genome v1.0Vicia faba
caivfhR345Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
caitifR465Vicia faba cv. Tiffany genome v1.0Vicia faba
caivfhR465Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
caivrvR337Vigna radiata cv. VC1973A genome v6.0Vigna radiata
caivrvR390Vigna radiata cv. VC1973A genome v6.0Vigna radiata
caivssR0448Vicia sativa cv. Studenica genome v1.0Vicia sativa
caivssR0523Vicia sativa cv. Studenica genome v1.0Vicia sativa
caivuaR329Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
caivuaR371Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
caicanR0366Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
caicanR0376Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
Vfaba.Tiffany.R1.3g051960.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-KK1_029695Cajanus cajan Asha genome v1.0Cajanus cajan
rna-XM_014639635.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
evm.model.Chr07.2596Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
jg1946.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-TanjilR_11455Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
evm.model.Chr01.1345Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-TanjilR_24577Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Psat06G0161000-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Phvul.007G176000.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
LR48_mrnaVigan02g123200Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-XM_014656568.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-TanjilR_01966Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigun07g105500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Phvul.001G155700.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Psat6g058160.1Pisum sativum Cameor genome v1aPisum sativum
rna-KK1_000981Cajanus cajan Asha genome v1.0Cajanus cajan
Vigun01g138100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-XM_004495095.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Ca_09021Ca_09021_ICC4958_v2Cicer arietinumgene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_09021.1.utr5p1Ca_09021.1.utr5p1_ICC4958_v2Cicer arietinumfive_prime_UTR
Ca_09021.1.utr5p2Ca_09021.1.utr5p2_ICC4958_v2Cicer arietinumfive_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_09021.1.exon1Ca_09021.1.exon1_ICC4958_v2Cicer arietinumexon
Ca_09021.1.exon2Ca_09021.1.exon2_ICC4958_v2Cicer arietinumexon
Ca_09021.1.exon3Ca_09021.1.exon3_ICC4958_v2Cicer arietinumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_09021.1.cds1Ca_09021.1.cds1_ICC4958_v2Cicer arietinumCDS
Ca_09021.1.cds2Ca_09021.1.cds2_ICC4958_v2Cicer arietinumCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_09021.1.utr3p1Ca_09021.1.utr3p1_ICC4958_v2Cicer arietinumthree_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_09021.1_ICC4958_v2Ca_09021.1_ICC4958_v2Cicer arietinumpolypeptide


Homology
[Close]
BLAST of Ca_09021.1 vs. DB:Swiss
Match: H2AV3_ORYSJ (Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0743400 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 4.202e-70
Identity = 103/109 (94.50%), Postives = 106/109 (97.25%), Query Frame = 1 
Query:   76 PTSRSSRAGIQFPVGRIHRQLKQRVQANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 402
            P SRSSRAG+QFPVGRIHRQLKQR QANGRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK+SKE
Sbjct:   29 PVSRSSRAGLQFPVGRIHRQLKQRTQANGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 137
[Close]
BLAST of Ca_09021.1 vs. DB:Swiss
Match: H2AV2_ORYSJ (Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0418000 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 4.487e-69
Identity = 103/109 (94.50%), Postives = 105/109 (96.33%), Query Frame = 1 
Query:   76 PTSRSSRAGIQFPVGRIHRQLKQRVQANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 402
            P SRSSRAGIQFPVGRIHRQLK RV ANGRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKT+KE
Sbjct:   31 PVSRSSRAGIQFPVGRIHRQLKGRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTAKE 139
[Close]
BLAST of Ca_09021.1 vs. DB:Swiss
Match: H2AV1_ARATH (Histone H2A variant 1 OS=Arabidopsis thaliana OX=3702 GN=H2AV PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.140e-68
Identity = 102/109 (93.58%), Postives = 105/109 (96.33%), Query Frame = 1 
Query:   76 PTSRSSRAGIQFPVGRIHRQLKQRVQANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 402
            P SRS+RAGIQFPVGRIHRQLK RV A+GRVGATAAVY ASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKT+KE
Sbjct:   28 PISRSARAGIQFPVGRIHRQLKTRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKE 136
[Close]
BLAST of Ca_09021.1 vs. DB:Swiss
Match: H2AV1_ORYSJ (Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0162200 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 8.951e-68
Identity = 101/109 (92.66%), Postives = 104/109 (95.41%), Query Frame = 1 
Query:   76 PTSRSSRAGIQFPVGRIHRQLKQRVQANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 402
            P SRSSRAG+QFPVGRIHRQLK R  A+GRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE
Sbjct:   30 PVSRSSRAGLQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 138
[Close]
BLAST of Ca_09021.1 vs. DB:Swiss
Match: H2AV2_ARATH (Probable histone H2A variant 2 OS=Arabidopsis thaliana OX=3702 GN=At2g38810 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.567e-67
Identity = 100/107 (93.46%), Postives = 104/107 (97.20%), Query Frame = 1 
Query:   82 SRSSRAGIQFPVGRIHRQLKQRVQANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 402
            SRSSRAGIQFPVGRIHRQLKQRV A+GRVGATAAVY ASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSL+NK +K+
Sbjct:   30 SRSSRAGIQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLVNKVTKD 136
[Close]
BLAST of Ca_09021.1 vs. DB:Swiss
Match: H2AV3_ARATH (Probable histone H2A variant 3 OS=Arabidopsis thaliana OX=3702 GN=At1g52740 PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.292e-64
Identity = 95/109 (87.16%), Postives = 103/109 (94.50%), Query Frame = 1 
Query:   76 PTSRSSRAGIQFPVGRIHRQLKQRVQANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 402
            P +RSSRAG+QFPVGR+HR LK R  A+GRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK++KE
Sbjct:   26 PITRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSAKE 134
[Close]
BLAST of Ca_09021.1 vs. DB:Swiss
Match: H2AV_STRPU (Histone H2A.V (Fragment) OS=Strongylocentrotus purpuratus OX=7668 GN=H2A.F/Z PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.598e-60
Identity = 90/103 (87.38%), Postives = 96/103 (93.20%), Query Frame = 1 
Query:   82 SRSSRAGIQFPVGRIHRQLKQRVQANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 390
            SRS+RAG+QFPVGRIHR LK R  ++GRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K
Sbjct:   16 SRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 118
[Close]
BLAST of Ca_09021.1 vs. DB:Swiss
Match: H2AZ_SHEEP (Histone H2A.Z OS=Ovis aries OX=9940 GN=H2AFZ PE=2 SV=3)

HSP 1 Score: 184.111 bits (466), Expect = 6.032e-60
Identity = 90/107 (84.11%), Postives = 97/107 (90.65%), Query Frame = 1 
Query:   82 SRSSRAGIQFPVGRIHRQLKQRVQANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 402
            SRS RAG+QFPVGRIHR LK R  ++GRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   19 SRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of Ca_09021.1 vs. DB:Swiss
Match: H2AZ_RAT (Histone H2A.Z OS=Rattus norvegicus OX=10116 GN=H2afz PE=1 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 6.032e-60
Identity = 90/107 (84.11%), Postives = 97/107 (90.65%), Query Frame = 1 
Query:   82 SRSSRAGIQFPVGRIHRQLKQRVQANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 402
            SRS RAG+QFPVGRIHR LK R  ++GRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   19 SRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of Ca_09021.1 vs. DB:Swiss
Match: H2AZ_PONAB (Histone H2A.Z OS=Pongo abelii OX=9601 GN=H2AFZ PE=2 SV=3)

HSP 1 Score: 184.111 bits (466), Expect = 6.032e-60
Identity = 90/107 (84.11%), Postives = 97/107 (90.65%), Query Frame = 1 
Query:   82 SRSSRAGIQFPVGRIHRQLKQRVQANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 402
            SRS RAG+QFPVGRIHR LK R  ++GRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   19 SRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
The following BLAST results are available for this feature:
BLAST of Ca_09021.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
H2AV3_ORYSJ4.202e-7094.50Probable histone H2A variant 3 OS=Oryza sativa sub... [more]
H2AV2_ORYSJ4.487e-6994.50Probable histone H2A variant 2 OS=Oryza sativa sub... [more]
H2AV1_ARATH1.140e-6893.58Histone H2A variant 1 OS=Arabidopsis thaliana OX=3... [more]
H2AV1_ORYSJ8.951e-6892.66Probable histone H2A variant 1 OS=Oryza sativa sub... [more]
H2AV2_ARATH1.567e-6793.46Probable histone H2A variant 2 OS=Arabidopsis thal... [more]
H2AV3_ARATH4.292e-6487.16Probable histone H2A variant 3 OS=Arabidopsis thal... [more]
H2AV_STRPU4.598e-6087.38Histone H2A.V (Fragment) OS=Strongylocentrotus pur... [more]
H2AZ_SHEEP6.032e-6084.11Histone H2A.Z OS=Ovis aries OX=9940 GN=H2AFZ PE=2 ... [more]
H2AZ_RAT6.032e-6084.11Histone H2A.Z OS=Rattus norvegicus OX=10116 GN=H2a... [more]
H2AZ_PONAB6.032e-6084.11Histone H2A.Z OS=Pongo abelii OX=9601 GN=H2AFZ PE=... [more]
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InterPro
Analysis Name: InterProScan: C. arietinum ICC 4958, v2.0 (desi)
Date Performed: 2019-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002119Histone H2APRINTSPR00620HISTONEH2Acoord: 70..83
score: 84.63
coord: 25..47
score: 68.28
coord: 111..129
score: 51.98
coord: 84..98
score: 65.78
coord: 55..70
score: 69.94
IPR002119Histone H2ASMARTSM00414h2a4coord: 14..134
e-value: 3.2E-68
score: 242.6
IPR002119Histone H2ACDDcd00074H2Acoord: 26..130
e-value: 2.52427E-56
score: 169.053
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 18..103
e-value: 2.7E-21
score: 76.3
IPR009072Histone-foldGENE3D1.10.20.10coord: 13..134
e-value: 1.9E-52
score: 178.5
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 10..111
IPR032454Histone H2A, C-terminal domainPFAMPF16211Histone_H2A_Ccoord: 104..133
e-value: 1.0E-10
score: 41.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..36
NoneNo IPR availablePANTHERPTHR23430:SF247coord: 12..134
NoneNo IPR availablePANTHERPTHR23430HISTONE H2Acoord: 12..134

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_09021.1_ICC4958_v2 ID=Ca_09021.1_ICC4958_v2; Name=Ca_09021.1; organism=Cicer arietinum; type=mRNA; length=1566bp
ATTTAATGTCATGACAACGATACTTTATCTCATTCTATTCTTTTCGATCT
AAAATTCAATACCCAAACCCACTCACTTTCTCTTTCGTTTTTCTCAGGTT
TCTTCTCTCTTCTCTCTTCACGATACATGTTCCCAGATCTATCTTTTTCT
TTTCAACGTTTAATTGTTGTTTAACTGTTACAATTTTCAGGTAACCAATG
GCAGGAAAGGGAGGGAAAGGTCTTGTTGCTGCGAAAACCACCGCCGCTAA
CAAAGACAAAGACAAGAAAAAACCCACTTCCCGTTCGTCTCGTGCCGGAA
TTCAGGTGAATCGTCTTTTCCCTTTATTCGCTAGATAACTATATCATTCG
CCCTCGCAATTTATTTATTTATTTATTTTTTTATTTAGGGCTAGGTTTCG
AAATAATGAATTAGCCGGAAACCGAATTAGGTTTTTTATTATTTTTTATT
TTATTTTTTATAATAATTAATTTATTTAAAAGTGTTAATTTTTGGTGTGC
TGTTCTGTTTTGATGGTAGAATTTATTTTGTACTACATGTCAATTGTATG
TTTTTGTACAAGATAAACATGTAAACTAATTTCTTTCAAATTAGTAGTAA
ATTTTTCTAGATAGTATACATTTTTCGTTGGTAAATTTTAACAAACGATT
TGCACAGGTACATTTTTATTTTGGGTGTGTAAAATATTGACTTTTAATCA
ATGAAGTTTCCTTTTGAATTTCCTTTATAATGTAGTAAATTGCAAGTGGG
GGTTGTTGTTTATAAACAACAACTCTTACATTTTAACCTCTGATTTTTTA
AGTATGGCTTACATTCAATATAAAAACCTAGTACTCAGAACATTTTTATG
TCATTATACTATTAATTTTGTCAGATGTTTTTTATTTCTTCCCAATTTAT
AAAAATACTGACTTTTGATATGATGCACTTTACAGTTAATGGGACCCATT
TTGATGTCTGTTTTTTTGGTTTTCTTGATAAAGTTTTTATTTAATAGTAT
AAATTGCAATGGTGTTTGTAGTTTCCTGTGGGTAGGATTCACAGACAGCT
GAAACAAAGAGTCCAGGCCAATGGACGTGTGGGAGCAACTGCTGCAGTGT
ATTTGGCTTCCATTCTGGAGTATCTGACGGCAGAAGTTCTTGAACTTGCT
GGAAATGCAAGCAAAGATCTGAAGGTGAAGAGGATAACACCAAGGCATTT
GCAGCTAGCTATAAGGGGAGATGAAGAGCTTGATACCCTTATTAAAGGGA
CCATTGCTGGTGGTGGTGTCATCCCTCATATTCACAAGTCCTTGATCAAC
AAAACCTCCAAGGAATGAGCTCTTTTGCTTCTGGTTTCATGAGGATGTTT
TACTTTAACTAGGTTGTGTTTGTTATTATGATTATGATGACTTGAAATGG
TGATCACAGTAGGGTAGTGTTAGAATTGATATGTTAGTGTGTAAATGGTG
GCATTTTTATGTGATCCTTTGACTTGTTTAATTTGTCTGTCTTAAAGAGT
TGCGATGCTGTTTGAGGATTTAGACCATGCTTTCTTTTACATAAAAATTG
CGACTTGTAGTCCTTA
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protein sequence of Ca_09021.1_ICC4958_v2

>Ca_09021.1_ICC4958_v2 ID=Ca_09021.1_ICC4958_v2; Name=Ca_09021.1_ICC4958_v2; organism=Cicer arietinum; type=polypeptide; length=134bp
MAGKGGKGLVAAKTTAANKDKDKKKPTSRSSRAGIQFPVGRIHRQLKQRV
QANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAI
RGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE
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mRNA from alignment at Ca_LG_4:12248339..12249904+

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_09021.1_ICC4958_v2 ID=Ca_09021.1_ICC4958_v2; Name=Ca_09021.1; organism=Cicer arietinum; type=mRNA; length=1566bp; location=Sequence derived from: Ca_LG_4:12248339..12249904+ (Cicer arietinum
ATTTAATGTCATGACAACGATACTTTATCTCATTCTATTCTTTTCGATCT
AAAATTCAATACCCAAACCCACTCACTTTCTCTTTCGTTTTTCTCAGGTT
TCTTCTCTCTTCTCTCTTCACGATACATGTTCCCAGATCTATCTTTTTCT
TTTCAACGTTTAATTGTTGTTTAACTGTTACAATTTTCAGGTAACCAATG
GCAGGAAAGGGAGGGAAAGGTCTTGTTGCTGCGAAAACCACCGCCGCTAA
CAAAGACAAAGACAAGAAAAAACCCACTTCCCGTTCGTCTCGTGCCGGAA
TTCAGGTGAATCGTCTTTTCCCTTTATTCGCTAGATAACTATATCATTCG
CCCTCGCAATTTATTTATTTATTTATTTTTTTATTTAGGGCTAGGTTTCG
AAATAATGAATTAGCCGGAAACCGAATTAGGTTTTTTATTATTTTTTATT
TTATTTTTTATAATAATTAATTTATTTAAAAGTGTTAATTTTTGGTGTGC
TGTTCTGTTTTGATGGTAGAATTTATTTTGTACTACATGTCAATTGTATG
TTTTTGTACAAGATAAACATGTAAACTAATTTCTTTCAAATTAGTAGTAA
ATTTTTCTAGATAGTATACATTTTTCGTTGGTAAATTTTAACAAACGATT
TGCACAGGTACATTTTTATTTTGGGTGTGTAAAATATTGACTTTTAATCA
ATGAAGTTTCCTTTTGAATTTCCTTTATAATGTAGTAAATTGCAAGTGGG
GGTTGTTGTTTATAAACAACAACTCTTACATTTTAACCTCTGATTTTTTA
AGTATGGCTTACATTCAATATAAAAACCTAGTACTCAGAACATTTTTATG
TCATTATACTATTAATTTTGTCAGATGTTTTTTATTTCTTCCCAATTTAT
AAAAATACTGACTTTTGATATGATGCACTTTACAGTTAATGGGACCCATT
TTGATGTCTGTTTTTTTGGTTTTCTTGATAAAGTTTTTATTTAATAGTAT
AAATTGCAATGGTGTTTGTAGTTTCCTGTGGGTAGGATTCACAGACAGCT
GAAACAAAGAGTCCAGGCCAATGGACGTGTGGGAGCAACTGCTGCAGTGT
ATTTGGCTTCCATTCTGGAGTATCTGACGGCAGAAGTTCTTGAACTTGCT
GGAAATGCAAGCAAAGATCTGAAGGTGAAGAGGATAACACCAAGGCATTT
GCAGCTAGCTATAAGGGGAGATGAAGAGCTTGATACCCTTATTAAAGGGA
CCATTGCTGGTGGTGGTGTCATCCCTCATATTCACAAGTCCTTGATCAAC
AAAACCTCCAAGGAATGAGCTCTTTTGCTTCTGGTTTCATGAGGATGTTT
TACTTTAACTAGGTTGTGTTTGTTATTATGATTATGATGACTTGAAATGG
TGATCACAGTAGGGTAGTGTTAGAATTGATATGTTAGTGTGTAAATGGTG
GCATTTTTATGTGATCCTTTGACTTGTTTAATTTGTCTGTCTTAAAGAGT
TGCGATGCTGTTTGAGGATTTAGACCATGCTTTCTTTTACATAAAAATTG
CGACTTGTAGTCCTTA
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Coding sequence (CDS) from alignment at Ca_LG_4:12248339..12249904+

>Ca_09021.1_ICC4958_v2 ID=Ca_09021.1_ICC4958_v2; Name=Ca_09021.1; organism=Cicer arietinum; type=CDS; length=405bp; location=Sequence derived from: Ca_LG_4:12248339..12249904+ (Cicer arietinum
ATGGCAGGAAAGGGAGGGAAAGGTCTTGTTGCTGCGAAAACCACCGCCGC
TAACAAAGACAAAGACAAGAAAAAACCCACTTCCCGTTCGTCTCGTGCCG
GAATTCAGTTTCCTGTGGGTAGGATTCACAGACAGCTGAAACAAAGAGTC
CAGGCCAATGGACGTGTGGGAGCAACTGCTGCAGTGTATTTGGCTTCCAT
TCTGGAGTATCTGACGGCAGAAGTTCTTGAACTTGCTGGAAATGCAAGCA
AAGATCTGAAGGTGAAGAGGATAACACCAAGGCATTTGCAGCTAGCTATA
AGGGGAGATGAAGAGCTTGATACCCTTATTAAAGGGACCATTGCTGGTGG
TGGTGTCATCCCTCATATTCACAAGTCCTTGATCAACAAAACCTCCAAGG
AATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR002119Histone_H2A
IPR007125Histone_H2A/H2B/H3
IPR009072Histone-fold
IPR032454Histone_H2A_C
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046982protein heterodimerization activity
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
GO:0005634nucleus