Ca_10475.1, Ca_10475.1_ICC4958_v2 (mRNA) Cicer arietinum

Transcript Overview
NameCa_10475.1
Unique NameCa_10475.1_ICC4958_v2
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length255
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca_LG_4supercontigCa_LG_4:30387854..30388108 -Cicer arietinum ICC 4958 genome v2n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum ICC 4958 genome v22015-08-11
InterProScan: C. arietinum ICC 4958, v2.0 (desi)2019-05-21
BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot2019-05-21
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Ca_10475Ca_10475_ICC4958_v2Cicer arietinumgene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_10475.1.cds1Ca_10475.1.cds1_ICC4958_v2Cicer arietinumCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_10475.1.exon1Ca_10475.1.exon1_ICC4958_v2Cicer arietinumexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_10475.1_ICC4958_v2Ca_10475.1_ICC4958_v2Cicer arietinumpolypeptide


Homology
[Close]
BLAST of Ca_10475.1 vs. DB:Swiss
Match: THI41_VITVI (Thiamine thiazole synthase 1, chloroplastic OS=Vitis vinifera OX=29760 GN=THI1-1 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.662e-35
Identity = 58/72 (80.56%), Postives = 65/72 (90.28%), Query Frame = 1 
Query:    1 MSKLLAKPNVKLFNVVVVDDLIVKEGRIGGVVTNWVLVSVNH--GSCMDPNIMEAKVVVSSCGHDGPFGATG 210
            MSKLLA+PNVKLFN V  +DLI+KEG++GGVVTNW LVS+NH   SCMDPN+MEAKVVVSSCGHDGPFGATG
Sbjct:  173 MSKLLARPNVKLFNAVAAEDLIIKEGKVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATG 244
[Close]
BLAST of Ca_10475.1 vs. DB:Swiss
Match: THI42_VITVI (Thiamine thiazole synthase 2, chloroplastic OS=Vitis vinifera OX=29760 GN=THI1-2 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 6.259e-34
Identity = 58/72 (80.56%), Postives = 63/72 (87.50%), Query Frame = 1 
Query:    1 MSKLLAKPNVKLFNVVVVDDLIVKEGRIGGVVTNWVLVSVNHG--SCMDPNIMEAKVVVSSCGHDGPFGATG 210
            MSKLLA+PNVKLFN V  +DLIVKE R+ GVVTNW LVS+NH   SCMDPN+MEAKVVVSSCGHDGPFGATG
Sbjct:  174 MSKLLARPNVKLFNAVAAEDLIVKEERVAGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATG 245
[Close]
BLAST of Ca_10475.1 vs. DB:Swiss
Match: THI4_ARATH (Thiamine thiazole synthase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THI1 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.357e-33
Identity = 56/72 (77.78%), Postives = 62/72 (86.11%), Query Frame = 1 
Query:    1 MSKLLAKPNVKLFNVVVVDDLIVKEGRIGGVVTNWVLVSVNH--GSCMDPNIMEAKVVVSSCGHDGPFGATG 210
            MSKLLA+PNVKLFN V  +DLIVK  R+GGVVTNW LV+ NH   SCMDPN+MEAK+VVSSCGHDGPFGATG
Sbjct:  170 MSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATG 241
[Close]
BLAST of Ca_10475.1 vs. DB:Swiss
Match: THI44_PHYPA (Thiamine thiazole synthase 4, chloroplastic OS=Physcomitrella patens subsp. patens OX=3218 GN=THI1-4 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.748e-32
Identity = 54/72 (75.00%), Postives = 61/72 (84.72%), Query Frame = 1 
Query:    1 MSKLLAKPNVKLFNVVVVDDLIVKEGRIGGVVTNWVLVSVNHG--SCMDPNIMEAKVVVSSCGHDGPFGATG 210
            MSKLLA+PNVKLFN V  +DLI++  R+ GVVTNW LV+ NH   SCMDPN+MEAKVVVSSCGHDGPFGATG
Sbjct:  165 MSKLLARPNVKLFNAVAAEDLIIRGDRVSGVVTNWALVAQNHNTQSCMDPNVMEAKVVVSSCGHDGPFGATG 236
[Close]
BLAST of Ca_10475.1 vs. DB:Swiss
Match: THI42_PHYPA (Thiamine thiazole synthase 2, chloroplastic OS=Physcomitrella patens subsp. patens OX=3218 GN=THI1-2 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.840e-32
Identity = 54/72 (75.00%), Postives = 61/72 (84.72%), Query Frame = 1 
Query:    1 MSKLLAKPNVKLFNVVVVDDLIVKEGRIGGVVTNWVLVSVNHG--SCMDPNIMEAKVVVSSCGHDGPFGATG 210
            MSKLLA+PNVKLFN V  +DLI++  R+ GVVTNW LV+ NH   SCMDPN+MEAKVVVSSCGHDGPFGATG
Sbjct:  178 MSKLLARPNVKLFNAVAAEDLIIRGDRVSGVVTNWALVAQNHNTQSCMDPNVMEAKVVVSSCGHDGPFGATG 249
[Close]
BLAST of Ca_10475.1 vs. DB:Swiss
Match: THI41_PHYPA (Thiamine thiazole synthase 1, chloroplastic OS=Physcomitrella patens subsp. patens OX=3218 GN=THI1-1 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.862e-32
Identity = 54/72 (75.00%), Postives = 61/72 (84.72%), Query Frame = 1 
Query:    1 MSKLLAKPNVKLFNVVVVDDLIVKEGRIGGVVTNWVLVSVNHG--SCMDPNIMEAKVVVSSCGHDGPFGATG 210
            MSKLLA+PNVKLFN V  +DLI++  R+ GVVTNW LV+ NH   SCMDPN+MEAKVVVSSCGHDGPFGATG
Sbjct:  179 MSKLLARPNVKLFNAVAAEDLIIRGDRVSGVVTNWALVAQNHNTQSCMDPNVMEAKVVVSSCGHDGPFGATG 250
[Close]
BLAST of Ca_10475.1 vs. DB:Swiss
Match: THI43_PHYPA (Thiamine thiazole synthase 3, chloroplastic OS=Physcomitrella patens subsp. patens OX=3218 GN=THI1-3 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 4.158e-32
Identity = 54/72 (75.00%), Postives = 61/72 (84.72%), Query Frame = 1 
Query:    1 MSKLLAKPNVKLFNVVVVDDLIVKEGRIGGVVTNWVLVSVNHG--SCMDPNIMEAKVVVSSCGHDGPFGATG 210
            MSKLLA+PNVKLFN V  +DLI++  R+ GVVTNW LV+ NH   SCMDPN+MEAKVVVSSCGHDGPFGATG
Sbjct:  179 MSKLLARPNVKLFNAVAAEDLIIRGDRVSGVVTNWALVAQNHNTQSCMDPNVMEAKVVVSSCGHDGPFGATG 250
[Close]
BLAST of Ca_10475.1 vs. DB:Swiss
Match: THI42_SORBI (Thiamine thiazole synthase 2, chloroplastic OS=Sorghum bicolor OX=4558 GN=THI1-2 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.070e-28
Identity = 59/72 (81.94%), Postives = 65/72 (90.28%), Query Frame = 1 
Query:    1 MSKLLAKPNVKLFNVVVVDDLIVKEGRIGGVVTNWVLVSVNH--GSCMDPNIMEAKVVVSSCGHDGPFGATG 210
            MS+LLA+PNVKLFN V V+DLIVK GR+GGVVTNW LVS+NH   SCMDPN+MEAKVVVSSCGHDGPFGATG
Sbjct:  171 MSRLLARPNVKLFNAVAVEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATG 242
[Close]
BLAST of Ca_10475.1 vs. DB:Swiss
Match: THI42_MAIZE (Thiamine thiazole synthase 2, chloroplastic OS=Zea mays OX=4577 GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.268e-28
Identity = 58/72 (80.56%), Postives = 65/72 (90.28%), Query Frame = 1 
Query:    1 MSKLLAKPNVKLFNVVVVDDLIVKEGRIGGVVTNWVLVSVNH--GSCMDPNIMEAKVVVSSCGHDGPFGATG 210
            MS+LLA+PNVKLFN V V+DLIV+ GR+GGVVTNW LVS+NH   SCMDPN+MEAKVVVSSCGHDGPFGATG
Sbjct:  173 MSRLLARPNVKLFNAVAVEDLIVRRGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATG 244
[Close]
BLAST of Ca_10475.1 vs. DB:Swiss
Match: THI41_SORBI (Thiamine thiazole synthase 1, chloroplastic OS=Sorghum bicolor OX=4558 GN=THI1-1 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.941e-27
Identity = 58/72 (80.56%), Postives = 64/72 (88.89%), Query Frame = 1 
Query:    1 MSKLLAKPNVKLFNVVVVDDLIVKEGRIGGVVTNWVLVSVNH--GSCMDPNIMEAKVVVSSCGHDGPFGATG 210
            MS +LA+PNVKLFN V V+DLIVK GR+GGVVTNW LVS+NH   SCMDPN+MEAKVVVSSCGHDGPFGATG
Sbjct:  173 MSAVLARPNVKLFNAVAVEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATG 244
The following BLAST results are available for this feature:
BLAST of Ca_10475.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
THI41_VITVI1.662e-3580.56Thiamine thiazole synthase 1, chloroplastic OS=Vit... [more]
THI42_VITVI6.259e-3480.56Thiamine thiazole synthase 2, chloroplastic OS=Vit... [more]
THI4_ARATH1.357e-3377.78Thiamine thiazole synthase, chloroplastic OS=Arabi... [more]
THI44_PHYPA2.748e-3275.00Thiamine thiazole synthase 4, chloroplastic OS=Phy... [more]
THI42_PHYPA3.840e-3275.00Thiamine thiazole synthase 2, chloroplastic OS=Phy... [more]
THI41_PHYPA3.862e-3275.00Thiamine thiazole synthase 1, chloroplastic OS=Phy... [more]
THI43_PHYPA4.158e-3275.00Thiamine thiazole synthase 3, chloroplastic OS=Phy... [more]
THI42_SORBI2.070e-2881.94Thiamine thiazole synthase 2, chloroplastic OS=Sor... [more]
THI42_MAIZE2.268e-2880.56Thiamine thiazole synthase 2, chloroplastic OS=Zea... [more]
THI41_SORBI2.941e-2780.56Thiamine thiazole synthase 1, chloroplastic OS=Sor... [more]
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InterPro
Analysis Name: InterProScan: C. arietinum ICC 4958, v2.0 (desi)
Date Performed: 2019-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036188FAD/NAD(P)-binding domain superfamilyGENE3D3.50.50.60coord: 1..72
e-value: 1.2E-24
score: 88.9
IPR036188FAD/NAD(P)-binding domain superfamilySUPERFAMILY51905FAD/NAD(P)-binding domaincoord: 4..67
NoneNo IPR availablePFAMPF01946Thi4coord: 1..69
e-value: 1.8E-26
score: 92.8
NoneNo IPR availablePANTHERPTHR43422FAMILY NOT NAMEDcoord: 1..70
NoneNo IPR availablePANTHERPTHR43422:SF7THIAMINE THIAZOLE SYNTHASE, CHLOROPLASTICcoord: 1..70

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_10475.1_ICC4958_v2 ID=Ca_10475.1_ICC4958_v2; Name=Ca_10475.1; organism=Cicer arietinum; type=mRNA; length=255bp
ATGAGCAAGCTTCTCGCTAAACCTAACGTGAAATTGTTCAATGTTGTTGT
TGTTGATGATTTGATTGTGAAAGAAGGAAGAATTGGTGGTGTTGTTACGA
ATTGGGTTTTGGTTTCAGTGAATCATGGCTCTTGTATGGATCCTAATATT
ATGGAAGCTAAGGTTGTTGTGAGTTCTTGTGGACATGATGGTCCTTTTGG
TGCTACTGGTCCTTTTGGTTCCTATGCGATAATAATTGATAGTAGTCGAT
TTTGA
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protein sequence of Ca_10475.1_ICC4958_v2

>Ca_10475.1_ICC4958_v2 ID=Ca_10475.1_ICC4958_v2; Name=Ca_10475.1_ICC4958_v2; organism=Cicer arietinum; type=polypeptide; length=84bp
MSKLLAKPNVKLFNVVVVDDLIVKEGRIGGVVTNWVLVSVNHGSCMDPNI
MEAKVVVSSCGHDGPFGATGPFGSYAIIIDSSRF
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mRNA from alignment at Ca_LG_4:30387854..30388108-

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_10475.1_ICC4958_v2 ID=Ca_10475.1_ICC4958_v2; Name=Ca_10475.1; organism=Cicer arietinum; type=mRNA; length=255bp; location=Sequence derived from: Ca_LG_4:30387854..30388108- (Cicer arietinum
ATGAGCAAGCTTCTCGCTAAACCTAACGTGAAATTGTTCAATGTTGTTGT
TGTTGATGATTTGATTGTGAAAGAAGGAAGAATTGGTGGTGTTGTTACGA
ATTGGGTTTTGGTTTCAGTGAATCATGGCTCTTGTATGGATCCTAATATT
ATGGAAGCTAAGGTTGTTGTGAGTTCTTGTGGACATGATGGTCCTTTTGG
TGCTACTGGTCCTTTTGGTTCCTATGCGATAATAATTGATAGTAGTCGAT
TTTGA
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Coding sequence (CDS) from alignment at Ca_LG_4:30387854..30388108-

>Ca_10475.1_ICC4958_v2 ID=Ca_10475.1_ICC4958_v2; Name=Ca_10475.1; organism=Cicer arietinum; type=CDS; length=255bp; location=Sequence derived from: Ca_LG_4:30387854..30388108- (Cicer arietinum
ATGAGCAAGCTTCTCGCTAAACCTAACGTGAAATTGTTCAATGTTGTTGT
TGTTGATGATTTGATTGTGAAAGAAGGAAGAATTGGTGGTGTTGTTACGA
ATTGGGTTTTGGTTTCAGTGAATCATGGCTCTTGTATGGATCCTAATATT
ATGGAAGCTAAGGTTGTTGTGAGTTCTTGTGGACATGATGGTCCTTTTGG
TGCTACTGGTCCTTTTGGTTCCTATGCGATAATAATTGATAGTAGTCGAT
TTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR036188FAD/NAD-bd_sf