Ca_13992.1, Ca_13992.1_ICC4958_v2 (mRNA) Cicer arietinum
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Ca_13992.1 vs. DB:Swiss
Match: SWET3_ARATH (Bidirectional sugar transporter SWEET3 OS=Arabidopsis thaliana OX=3702 GN=SWEET3 PE=1 SV=1) HSP 1 Score: 265.774 bits (678), Expect = 2.328e-88 Identity = 134/258 (51.94%), Postives = 177/258 (68.60%), Query Frame = 1 Query: 1 MLATLRFVVVFLGNIASVALYAAPIVTFKRVIKNKSTEEFSCIPYIIGLLNCLLFTWYGLPVVSYKWENLGLVTVNGVGIVLELSYVLIYFFYAPPRGKVKVGMITTLVVVVFCIIATVSAFSLHDTEHRKLLVGITGLCVSIALYGSPLVAMKKVIETKSVEFMPLPLSMCAFLASALWLTYGLLVRDIFIAGPSVFGTPLSILQLFIYFKYRRER-------IVDEPNNGDLERGSIQLE-EVYLEKNDVTNCEQC 750 M LR + LGN AS+ LY APIVTF RV K KSTEEFSC PY++ L NCL++TWYGLP+VS+ WENL LVT+NGVGI+LE ++ IYF+YA P+ K+KVG+ V+V F + +SA D HRK VG GL SI++YGSPLV MKKVIET+SVE+MP LS +FLAS+LWL YGLL D+F+A P++ TPL ILQL +YFKY+ ++ ++ + N+ D ++ LE V +++N TN + Sbjct: 1 MGDKLRLSIGILGNGASLLLYTAPIVTFSRVFKKKSTEEFSCFPYVMTLFNCLIYTWYGLPIVSHLWENLPLVTINGVGILLESIFIFIYFYYASPKEKIKVGVTFVPVIVGFGLTTAISALVFDDHRHRKSFVGSVGLVASISMYGSPLVVMKKVIETRSVEYMPFYLSFFSFLASSLWLAYGLLSHDLFLASPNMVATPLGILQLILYFKYKNKKDLAPTTMVITKRNDHD-DKNKATLEFVVDVDRNSDTNEKNS 257
BLAST of Ca_13992.1 vs. DB:Swiss
Match: SWT3B_ORYSJ (Bidirectional sugar transporter SWEET3b OS=Oryza sativa subsp. japonica OX=39947 GN=SWEET3B PE=3 SV=2) HSP 1 Score: 229.95 bits (585), Expect = 1.723e-74 Identity = 117/228 (51.32%), Postives = 159/228 (69.74%), Query Frame = 1 Query: 10 TLRFVVVFLGNIASVALYAAPIVTFKRVIKNKSTEEFSCIPYIIGLLNCLLFTWYGLPVVSYKWENLGLVTVNGVGIVLELSYVLIYFFYAPPRGKVKVGMITTLVVVVFCIIATVSAFSLHDTEHRKLLVGITGLCVSIALYGSPLVAMKKVIETKSVEFMPLPLSMCAFLASALWLTYGLLVRDIFIAGPSVFGTPLSILQLFIYFKYRR-ERIVDEPNNGDLERG 690 T+R V LGN AS+ LYAAPI+TF+RVIK S EEFSC+PYI+ L NCLL+TWYGLPVVS WEN + ++NG+GI+LE++++ IY ++AP K V + V+ F + A S+F H RK+ VG GL SI++Y SP+VA K+VI TKSVEFMP LS+ +FL+SALW+ YGLL +D+FIA P+ G P+ ILQL +Y YR+ + ++ ++ D E G Sbjct: 5 TIRVAVGILGNAASMLLYAAPILTFRRVIKKGSVEEFSCVPYILALFNCLLYTWYGLPVVSSGWENSTVSSINGLGILLEIAFISIYTWFAPRERKKFVLRMVLPVLAFFALTAIFSSFLFHTHGLRKVFVGSIGLVASISMYSSPMVAAKQVITTKSVEFMPFYLSLFSFLSSALWMIYGLLGKDLFIASPNFIGCPMGILQLVLYCIYRKSHKEAEKLHDIDQENG 232
BLAST of Ca_13992.1 vs. DB:Swiss
Match: SWT3A_ORYSJ (Bidirectional sugar transporter SWEET3a OS=Oryza sativa subsp. japonica OX=39947 GN=SWEET3A PE=3 SV=2) HSP 1 Score: 221.476 bits (563), Expect = 3.573e-71 Identity = 107/233 (45.92%), Postives = 161/233 (69.10%), Query Frame = 1 Query: 1 MLATLRFVVVFLGNIASVALYAAPIVTFKRVIKNKSTEEFSCIPYIIGLLNCLLFTWYGLPVVSYKWENLGLVTVNGVGIVLELSYVLIYFFYAPPRGKVKVGMITTLVVVVFCIIATVSAFSLHDTEHRKLLVGITGLCVSIALYGSPLVAMKKVIETKSVEFMPLPLSMCAFLASALWLTYGLLVRDIFIAGPSVFGTPLSILQLFIYFKYRRERIVDEPNN-GDLERGSI 696 M +RF+V +G++A + LY+API+TFKRVIK S EEFSCIPYI+ L +CL ++WYG PVVSY WEN+ + +++ +G++ E +++ IY ++AP K +V ++ +L++ VFC+ S+FS+H+ RK+ VG GL SI++YGSPLVAMK+VI TKSVEFMP LS+ S W+ YG++ RD FIA P+ G+ + ILQL +Y Y + + + P D+E+ ++ Sbjct: 1 MFPDIRFIVGIIGSVACMLLYSAPILTFKRVIKKASVEEFSCIPYILALFSCLTYSWYGFPVVSYGWENMTVCSISSLGVLFEGTFISIYVWFAPRGKKKQVMLMASLILAVFCMTVFFSSFSIHNHHIRKVFVGSVGLVSSISMYGSPLVAMKQVIRTKSVEFMPFYLSLFTLFTSLTWMAYGVIGRDPFIATPNCIGSIMGILQLVVYCIYSKCK--EAPKVLHDIEQANV 231
BLAST of Ca_13992.1 vs. DB:Swiss
Match: SWET1_ARATH (Bidirectional sugar transporter SWEET1 OS=Arabidopsis thaliana OX=3702 GN=SWEET1 PE=1 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 9.223e-60 Identity = 107/238 (44.96%), Postives = 149/238 (62.61%), Query Frame = 1 Query: 34 LGNIASVALYAAPIVTFKRVIKNKSTEEFSCIPYIIGLLNCLLFTWYGLPVVSYKWENLGLVTVNGVGIVLELSYVLIYFFYAPPRGKVKVGMITTLVVVVFCIIATVSAFSLHDTEHRKLLVGITGLCVSIALYGSPLVAMKKVIETKSVEFMPLPLSMCAFLASALWLTYGLLVRDIFIAGPSVFGTPLSILQLFIYFKYRRERIVDEPNNGDLERGSIQLEEVYLEKNDVTNCEQ 747 GN ++ L+ AP +TFKR+IKNKSTE+FS IPY + LLNCLL WYGLP VS +N + T+NG G V+E YVLI+ FYAP + K+K+ I + V+ VF +A VS F+L RKL G+ SI +Y SPL M+ V++TKSVEFMP LS+ FL W YGL+ RD F+A P+ FG L LQL +YF Y + ++ + + S+++++ +K +V N +Q Sbjct: 11 FGNATALFLFLAPSITFKRIIKNKSTEQFSGIPYPMTLLNCLLSAWYGLPFVSK--DNTLVSTINGTGAVIETVYVLIFLFYAPKKEKIKIFGIFSCVLAVFATVALVSLFALQG-NGRKLFCGLAATVFSIIMYASPLSIMRLVVKTKSVEFMPFFLSLFVFLCGTSWFVYGLIGRDPFVAIPNGFGCALGTLQLILYFIYCGNK-GEKSADAQKDEKSVEMKDDE-KKQNVVNGKQ 243
BLAST of Ca_13992.1 vs. DB:Swiss
Match: SWT1A_ORYSJ (Bidirectional sugar transporter SWEET1a OS=Oryza sativa subsp. japonica OX=39947 GN=SWEET1A PE=2 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 6.018e-51 Identity = 94/212 (44.34%), Postives = 133/212 (62.74%), Query Frame = 1 Query: 16 RFVVVFLGNIASVALYAAPIVTFKRVIKNKSTEEFSCIPYIIGLLNCLLFTWYGLPVVSYKWENLGLVTVNGVGIVLELSYVLIYFFYAPPRGKVKVGMITTLVVVVFCIIATVSAFSLHDTEHRKLLVGITGLCVSIALYGSPLVAMKKVIETKSVEFMPLPLSMCAFLASALWLTYGLLVRDIFIAGPSVFGTPLSILQLFIYFKYRRER 651 RF GN+ ++ L+ +P+VTF R+IK +STE+FS +PY + LLNCLL WYGLP VS N+ + T+NG G V+E YV+I+ +A + ++K+ + LV +F ++ VS +LH + RKL G+ SI +Y SPL M+ VI+TKSVEFMP LS+ FL W YGLL RD FIA P+ G+ L ++QL +Y YR + Sbjct: 6 RFFFGVSGNVIALFLFLSPVVTFWRIIKKRSTEDFSGVPYNMTLLNCLLSAWYGLPFVSP--NNILVTTINGTGSVIEAIYVVIFLIFAERKARLKMMGLLGLVTSIFTMVVLVSLLALHG-QGRKLFCGLAATIFSICMYASPLSIMRLVIKTKSVEFMPFLLSLSVFLCGTSWFIYGLLGRDPFIAIPNGCGSFLGLMQLILYAIYRNHK 214
BLAST of Ca_13992.1 vs. DB:Swiss
Match: SWT1A_SORBI (Bidirectional sugar transporter SWEET1a OS=Sorghum bicolor OX=4558 GN=SWEET1A PE=3 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 3.213e-48 Identity = 91/213 (42.72%), Postives = 134/213 (62.91%), Query Frame = 1 Query: 16 RFVVVFLGNIASVALYAAPIVTFKRVIKNKSTEEFSCIPYIIGLLNCLLFTWYGLPVVSYKWENLGLVTVNGVGIVLELSYVLIYFFYA-PPRGKVKVGMITTLVVVVFCIIATVSAFSLHDTEHRKLLVGITGLCVSIALYGSPLVAMKKVIETKSVEFMPLPLSMCAFLASALWLTYGLLVRDIFIAGPSVFGTPLSILQLFIYFKYRRER 651 RF GN+ ++ L+ +P+VTF R+I+ +STE+FS +PY + LLNCLL WYGLP VS N+ + T+NG G V+E YV+I+ +A R ++++ + ++VV +F + VS +LH RK+ G+ SI +Y SPL M+ VI+TKSVE+MP LS+ FL W YGLL RD FI P+ G+ L ++QL +YF YR+ + Sbjct: 6 RFFFGVSGNVIALFLFLSPVVTFWRIIRKRSTEDFSGVPYNMTLLNCLLSAWYGLPFVSP--NNILVSTINGTGSVIEAIYVVIFLIFAVDRRARLRMLGLLSIVVSIFATVVLVSLLALHGNA-RKVFCGLAATIFSICMYASPLSIMRLVIKTKSVEYMPFLLSLAVFLCGTSWFIYGLLGRDPFIIIPNGCGSFLGLVQLILYFIYRKNK 215
BLAST of Ca_13992.1 vs. DB:Swiss
Match: SWT2B_ORYSJ (Bidirectional sugar transporter SWEET2b OS=Oryza sativa subsp. japonica OX=39947 GN=SWEET2B PE=1 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 1.600e-46 Identity = 90/206 (43.69%), Postives = 129/206 (62.62%), Query Frame = 1 Query: 37 GNIASVALYAAPIVTFKRVIKNKSTEEFSCIPYIIGLLNCLLFTWYGLPVVSYKWENLGLVTVNGVGIVLELSYVLIYFFYAPPRGKVKVGMITTLVVVV--FCIIATVSAFSLHDTEHRKLLVGITGLCVSIALYGSPLVAMKKVIETKSVEFMPLPLSMCAFLASALWLTYGLLVRDIFIAGPSVFGTPLSILQLFIYFKYRRE 648 GNI ++AL+ +P+ TFKR++K KSTE F +PY+ LLNCL+ WYGLP V+ L + TVNG+G V +L+Y+ ++ FYA R K ++ +I LV+VV F +++ S F D R+ VG + I+++ SPL M VI ++SVEFMP LS+ FL SA + YGLL+RD FI P+ G L +QL +Y Y R+ Sbjct: 16 GNIFALALFLSPVTTFKRILKAKSTERFDGLPYLFSLLNCLICLWYGLPWVADG--RLLVATVNGIGAVFQLAYICLFIFYADSR-KTRMKIIGLLVLVVCGFALVSHASVF-FFDQPLRQQFVGAVSMASLISMFASPLAVMGVVIRSESVEFMPFYLSLSTFLMSASFALYGLLLRDFFIYFPNGLGLILGAMQLALYAYYSRK 217
BLAST of Ca_13992.1 vs. DB:Swiss
Match: SWT2B_ORYSI (Bidirectional sugar transporter SWEET2b OS=Oryza sativa subsp. indica OX=39946 GN=SWEET2B PE=3 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 1.600e-46 Identity = 90/206 (43.69%), Postives = 129/206 (62.62%), Query Frame = 1 Query: 37 GNIASVALYAAPIVTFKRVIKNKSTEEFSCIPYIIGLLNCLLFTWYGLPVVSYKWENLGLVTVNGVGIVLELSYVLIYFFYAPPRGKVKVGMITTLVVVV--FCIIATVSAFSLHDTEHRKLLVGITGLCVSIALYGSPLVAMKKVIETKSVEFMPLPLSMCAFLASALWLTYGLLVRDIFIAGPSVFGTPLSILQLFIYFKYRRE 648 GNI ++AL+ +P+ TFKR++K KSTE F +PY+ LLNCL+ WYGLP V+ L + TVNG+G V +L+Y+ ++ FYA R K ++ +I LV+VV F +++ S F D R+ VG + I+++ SPL M VI ++SVEFMP LS+ FL SA + YGLL+RD FI P+ G L +QL +Y Y R+ Sbjct: 16 GNIFALALFLSPVTTFKRILKAKSTERFDGLPYLFSLLNCLICLWYGLPWVADG--RLLVATVNGIGAVFQLAYICLFIFYADSR-KTRMKIIGLLVLVVCGFALVSHASVF-FFDQPLRQQFVGAVSMASLISMFASPLAVMGVVIRSESVEFMPFYLSLSTFLMSASFALYGLLLRDFFIYFPNGLGLILGAMQLALYAYYSRK 217
BLAST of Ca_13992.1 vs. DB:Swiss
Match: SWT2A_ORYSJ (Bidirectional sugar transporter SWEET2a OS=Oryza sativa subsp. japonica OX=39947 GN=SWEET2A PE=2 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 1.243e-45 Identity = 88/212 (41.51%), Postives = 129/212 (60.85%), Query Frame = 1 Query: 37 GNIASVALYAAPIVTFKRVIKNKSTEEFSCIPYIIGLLNCLLFTWYGLPVVSYKWENLGLV---TVNGVGIVLELSYVLIYFFYAPPRGKVKVGMITTLVVVVFCIIATVSAFSLHDTEHRKLLVGITGLCVSIALYGSPLVAMKKVIETKSVEFMPLPLSMCAFLASALWLTYGLLVRDIFIAGPSVFGTPLSILQLFIYFKYRRERIVDE 663 GNI ++ L+ +P+ TFKR+++N STE+FS +PYI LLNCL+ WYGLP VSY G+V TVN +G + +L+Y + +A + +VKV + +V VF +I VS +L D + R+L VG + I ++ SPL + VI TKSVE+MP LS+ FL S + YG+L+ D FI P+ GT L ++QL +Y +R+ D Sbjct: 30 GNIFALVLFISPLPTFKRIVRNGSTEQFSAMPYIYSLLNCLICLWYGLPFVSY-----GVVLVATVNSIGALFQLAYTATFIAFADAKNRVKVSSLLVMVFGVFALIVYVS-LALFDHQTRQLFVGYLSVASLIFMFASPLSIINLVIRTKSVEYMPFYLSLSMFLMSVSFFAYGVLLHDFFIYIPNGIGTVLGVIQLVLYGYFRKGSREDS 235
BLAST of Ca_13992.1 vs. DB:Swiss
Match: SWT2A_ORYSI (Bidirectional sugar transporter SWEET2a OS=Oryza sativa subsp. indica OX=39946 GN=SWEET2A PE=3 SV=2) HSP 1 Score: 155.992 bits (393), Expect = 1.243e-45 Identity = 88/212 (41.51%), Postives = 129/212 (60.85%), Query Frame = 1 Query: 37 GNIASVALYAAPIVTFKRVIKNKSTEEFSCIPYIIGLLNCLLFTWYGLPVVSYKWENLGLV---TVNGVGIVLELSYVLIYFFYAPPRGKVKVGMITTLVVVVFCIIATVSAFSLHDTEHRKLLVGITGLCVSIALYGSPLVAMKKVIETKSVEFMPLPLSMCAFLASALWLTYGLLVRDIFIAGPSVFGTPLSILQLFIYFKYRRERIVDE 663 GNI ++ L+ +P+ TFKR+++N STE+FS +PYI LLNCL+ WYGLP VSY G+V TVN +G + +L+Y + +A + +VKV + +V VF +I VS +L D + R+L VG + I ++ SPL + VI TKSVE+MP LS+ FL S + YG+L+ D FI P+ GT L ++QL +Y +R+ D Sbjct: 30 GNIFALVLFISPLPTFKRIVRNGSTEQFSAMPYIYSLLNCLICLWYGLPFVSY-----GVVLVATVNSIGALFQLAYTATFIAFADAKNRVKVSSLLVMVFGVFALIVYVS-LALFDHQTRQLFVGYLSVASLIFMFASPLSIINLVIRTKSVEYMPFYLSLSMFLMSVSFFAYGVLLHDFFIYIPNGIGTVLGVIQLVLYGYFRKGSREDS 235 The following BLAST results are available for this feature:
BLAST of Ca_13992.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: C. arietinum ICC 4958, v2.0 (desi)
Date Performed: 2019-05-21
Sequences
The
following sequences are available for this feature:
mRNA sequence >Ca_13992.1_ICC4958_v2 ID=Ca_13992.1_ICC4958_v2; Name=Ca_13992.1; organism=Cicer arietinum; type=mRNA; length=1480bpback to top protein sequence of Ca_13992.1_ICC4958_v2 >Ca_13992.1_ICC4958_v2 ID=Ca_13992.1_ICC4958_v2; Name=Ca_13992.1_ICC4958_v2; organism=Cicer arietinum; type=polypeptide; length=250bpback to top mRNA from alignment at Ca_LG_5:33591819..33593298+ Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>Ca_13992.1_ICC4958_v2 ID=Ca_13992.1_ICC4958_v2; Name=Ca_13992.1; organism=Cicer arietinum; type=mRNA; length=1480bp; location=Sequence derived from: Ca_LG_5:33591819..33593298+ (Cicer arietinumback to top Coding sequence (CDS) from alignment at Ca_LG_5:33591819..33593298+ >Ca_13992.1_ICC4958_v2 ID=Ca_13992.1_ICC4958_v2; Name=Ca_13992.1; organism=Cicer arietinum; type=CDS; length=753bp; location=Sequence derived from: Ca_LG_5:33591819..33593298+ (Cicer arietinumback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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