Ca_15029.1, Ca_15029.1_ICC4958_v2 (mRNA) Cicer arietinum

Transcript Overview
NameCa_15029.1
Unique NameCa_15029.1_ICC4958_v2
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length2112
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca_LG_5supercontigCa_LG_5:44053780..44055891 -Cicer arietinum ICC 4958 genome v2n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum ICC 4958 genome v22015-08-11
InterProScan: C. arietinum ICC 4958, v2.0 (desi)2019-05-21
BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot2019-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
caipsR473Pisum sativum Cameor genome v1aPisum sativum
caipsR488Pisum sativum Cameor genome v1aPisum sativum
caipsR508Pisum sativum Cameor genome v1aPisum sativum
caipsR545Pisum sativum Cameor genome v1aPisum sativum
caipvR0543Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caipvR0660Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caivuR0599Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caivuR0614Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caiccR0531Cajanus cajan Asha genome v1.0Cajanus cajan
caiccR0615Cajanus cajan Asha genome v1.0Cajanus cajan
ancaiL0373Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiL0440Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiL0894Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaiL655Vigna angularis Jingnong 6 genome v1.1Vigna angularis
caizwsR510Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
caizwsR609Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
caitifR553Vicia faba cv. Tiffany genome v1.0Vicia faba
caivfhR554Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
caitifR597Vicia faba cv. Tiffany genome v1.0Vicia faba
caivfhR595Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
caivrvR500Vigna radiata cv. VC1973A genome v6.0Vigna radiata
caivrvR546Vigna radiata cv. VC1973A genome v6.0Vigna radiata
caivssR0629Vicia sativa cv. Studenica genome v1.0Vicia sativa
caivssR0690Vicia sativa cv. Studenica genome v1.0Vicia sativa
caivuaR548Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
caivuaR609Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
caicanR0521Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
caicanR0563Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
jg55451.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigun09g206300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-TanjilR_13991Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vfaba.Hedin2.R1.2g186920.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-XM_014644850.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Phvul.009G096100.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
LR48_mrnaVigan04g215100Vigna angularis Jingnong 6 genome v1.1Vigna angularis
evm.model.Chr09.1643Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Psat05G0098600-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vfaba.Tiffany.R1.2g150760.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Psat5g027160.1Pisum sativum Cameor genome v1aPisum sativum
rna-KK1_042305Cajanus cajan Asha genome v1.0Cajanus cajan

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-XM_004501239.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Ca_15029Ca_15029_ICC4958_v2Cicer arietinumgene


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_15029.1.utr3p1Ca_15029.1.utr3p1_ICC4958_v2Cicer arietinumthree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_15029.1.cds7Ca_15029.1.cds7_ICC4958_v2Cicer arietinumCDS
Ca_15029.1.cds6Ca_15029.1.cds6_ICC4958_v2Cicer arietinumCDS
Ca_15029.1.cds5Ca_15029.1.cds5_ICC4958_v2Cicer arietinumCDS
Ca_15029.1.cds4Ca_15029.1.cds4_ICC4958_v2Cicer arietinumCDS
Ca_15029.1.cds3Ca_15029.1.cds3_ICC4958_v2Cicer arietinumCDS
Ca_15029.1.cds2Ca_15029.1.cds2_ICC4958_v2Cicer arietinumCDS
Ca_15029.1.cds1Ca_15029.1.cds1_ICC4958_v2Cicer arietinumCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_15029.1.exon7Ca_15029.1.exon7_ICC4958_v2Cicer arietinumexon
Ca_15029.1.exon6Ca_15029.1.exon6_ICC4958_v2Cicer arietinumexon
Ca_15029.1.exon5Ca_15029.1.exon5_ICC4958_v2Cicer arietinumexon
Ca_15029.1.exon4Ca_15029.1.exon4_ICC4958_v2Cicer arietinumexon
Ca_15029.1.exon3Ca_15029.1.exon3_ICC4958_v2Cicer arietinumexon
Ca_15029.1.exon2Ca_15029.1.exon2_ICC4958_v2Cicer arietinumexon
Ca_15029.1.exon1Ca_15029.1.exon1_ICC4958_v2Cicer arietinumexon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_15029.1.utr5p1Ca_15029.1.utr5p1_ICC4958_v2Cicer arietinumfive_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_15029.1_ICC4958_v2Ca_15029.1_ICC4958_v2Cicer arietinumpolypeptide


Homology
The following BLAST results are available for this feature:
BLAST of Ca_15029.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterProScan: C. arietinum ICC 4958, v2.0 (desi)
Date Performed: 2019-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35716FAMILY NOT NAMEDcoord: 21..193
NoneNo IPR availablePANTHERPTHR35716:SF1coord: 21..193

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_15029.1_ICC4958_v2 ID=Ca_15029.1_ICC4958_v2; Name=Ca_15029.1; organism=Cicer arietinum; type=mRNA; length=2112bp
TAGACATCATCCTCATCAGTGGAGGTAGAAGACGAGACGATGTCGTTTGG
GTCTTCTCTGTTATCTCCTCCGATGCATATTGTTTACCGAAAACAAAACA
GAACCTCTCGCACTCTCTTCAAAGTCTCCGCAAACGTTCCCGATTTTCTT
TCTGCAGACTGGTCTGCTCTCTACTATCATTCTTATTTCTATTTCTTTTC
ATAATTTCACGTAGTAATCAATACAATACTGCAGGTTTGAATCTCGCAAG
AAAAAACCCTTTGGTCCGAGATTAGATGTGAGCATCATTTGGTTTGCCAT
CTTCTTCACGTATGCGTCGTTTTTTCGATTTTTAATTTTATTCTGTTCAA
TTAAATTAAATTAATAAATATTGTTTCCTATAGTTCACTGCAGAAGATGC
TGTTCATCATCAGCTTCAAGCGTTGAAGTACAACGACCAACCCCGTCAAG
ATTATGGAATTGAAGTTATGTATAGGGTAATCAATTTTTTTTTTCTTTCT
TTCTATTTTCTTTCTTCAACAAATTTATAATCCCTAATTTATCCCTGCTA
TTTTTATGTTTGTTTATAGTTTGCTGGATTTGATCCTTTTGAAAGGTCAA
CCTATTTTGGCCCATTCTTTGATCTTGGTCAGGTAATACTTATTTATCTC
ATATTATTTGTCATTTTAGATTATCAAAGAAATATTAATTATCTTTTTTA
CTAATATACCCCATATTTTAATGAGATATAAAATTCCAGTGAATAATACA
CAATTTTAATTTTTTTTAAGTGTGCATAAACATAACATGAGAGGGTGGAG
TATATGTTGATGATAAACAGTGCAACTCTTTGTGTGTAGTTTGAAAGGTT
CAGACGTATTTTTCACCATTCTACTTACCGAGTCTTATTGGGTCACAAAG
AAAGAAAGATCATGAGCAGTTTGTTTGTGGAGGAGGTAAATAAAATGGAT
TTCATTTTAGCACAAAAAGTCACTGCCACATGTTTTGAACTTTAGTTTAC
AGGAATTTATTTATCAAGTATACATTTGGATATGTGCATTTCCAATGTAC
GAGTTCTTAATATTCTTTTTCATTTGTGGTAATTTTCTGTTGGGTGATGA
ACTTCAAACAGAACAAATATAAGCAGCGGATTTGGGTTCGAGGAAGTCGA
CCAGAGGAAGAGGAGATATTTCAATTTACAATGGTTCAGGTTTGATCATT
ATAGTCCTTGTTAACCATGTACTGTTTCCATTTACAATGTTTTATTTGGT
GTTGTTAAATTATCAAAATTCACCAAGCAATTAGACCATGCAATAGATGG
TTTATATGCCCCAATCCGTTGGGTCTATACTGTAGAGAGACTATGTAATA
CATTATGTGCATGTTTTGAATTTGGATGCATTCTGAGTTGTGCTCTTATC
AAACAATGTCAAATGTTTTTTTTTTTAAGAATGTCAAATGTTAATAGACA
GAATAGGGTAGTTAGTCGAGTTTGAGCATTGTGGATTGCTAGAGGATGAT
TTAACTTCGATAGACCTGTGCTTAGTTCAATGATAATATGAAACAAAAAT
GTTATTTGATCATCAATTTGGGACGACAGAATTCAAAAACTTTTTTTAAT
CTTCAGATAAGTGATTAATGAACTTGGTTAACCATAATGTTTAAGTGTTA
AAATCTACATGTAGTTGGAAGACTTTTGATCGTGGTTAATAATGCTCAAT
TAATGGTTTATGAATCATCTCATCTTGATGTACTCATTAACCACTCATTG
AACTGTGTTAATCATTTAAAGTGTTGTCGAATTTTGTGTCTCAAATTGAT
GTTCAAGTAATATTTCTAAATATGAAATTATGAACTATTTATTGTTTTTT
TTTATCAGTTCCGTGTTATTGTCTGATTTGTCACTAGTATCCATCTCTTG
TTGTTTTTGGCAGAGGGTTGGCGGTTGCTGGGATGGTTATTGGCTGACAG
AGTCTCTGCTTCACGACAGGGATACATTTTCTGGTGGGGTGGCATATTGA
TTACAAAACATTCAATAAAGGAGTCAGTTTCATGAAGCTCCATTGCCAAA
ACATAAAGTGACATGCTATTACTATCCTAATCCTCTGTAAAGTTTGTACA
TACATATATATA
back to top

protein sequence of Ca_15029.1_ICC4958_v2

>Ca_15029.1_ICC4958_v2 ID=Ca_15029.1_ICC4958_v2; Name=Ca_15029.1_ICC4958_v2; organism=Cicer arietinum; type=polypeptide; length=193bp
MSFGSSLLSPPMHIVYRKQNRTSRTLFKVSANVPDFLSADWFESRKKKPF
GPRLDFTAEDAVHHQLQALKYNDQPRQDYGIEVMYRFAGFDPFERSTYFG
PFFDLGQFERFRRIFHHSTYRVLLGHKERKIMSSLFVEENKYKQRIWVRG
SRPEEEEIFQFTMVQRVGGCWDGYWLTESLLHDRDTFSGGVAY
back to top

mRNA from alignment at Ca_LG_5:44053780..44055891-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_15029.1_ICC4958_v2 ID=Ca_15029.1_ICC4958_v2; Name=Ca_15029.1; organism=Cicer arietinum; type=mRNA; length=2112bp; location=Sequence derived from: Ca_LG_5:44053780..44055891- (Cicer arietinum
TAGACATCATCCTCATCAGTGGAGGTAGAAGACGAGACGATGTCGTTTGG
GTCTTCTCTGTTATCTCCTCCGATGCATATTGTTTACCGAAAACAAAACA
GAACCTCTCGCACTCTCTTCAAAGTCTCCGCAAACGTTCCCGATTTTCTT
TCTGCAGACTGGTCTGCTCTCTACTATCATTCTTATTTCTATTTCTTTTC
ATAATTTCACGTAGTAATCAATACAATACTGCAGGTTTGAATCTCGCAAG
AAAAAACCCTTTGGTCCGAGATTAGATGTGAGCATCATTTGGTTTGCCAT
CTTCTTCACGTATGCGTCGTTTTTTCGATTTTTAATTTTATTCTGTTCAA
TTAAATTAAATTAATAAATATTGTTTCCTATAGTTCACTGCAGAAGATGC
TGTTCATCATCAGCTTCAAGCGTTGAAGTACAACGACCAACCCCGTCAAG
ATTATGGAATTGAAGTTATGTATAGGGTAATCAATTTTTTTTTTCTTTCT
TTCTATTTTCTTTCTTCAACAAATTTATAATCCCTAATTTATCCCTGCTA
TTTTTATGTTTGTTTATAGTTTGCTGGATTTGATCCTTTTGAAAGGTCAA
CCTATTTTGGCCCATTCTTTGATCTTGGTCAGGTAATACTTATTTATCTC
ATATTATTTGTCATTTTAGATTATCAAAGAAATATTAATTATCTTTTTTA
CTAATATACCCCATATTTTAATGAGATATAAAATTCCAGTGAATAATACA
CAATTTTAATTTTTTTTAAGTGTGCATAAACATAACATGAGAGGGTGGAG
TATATGTTGATGATAAACAGTGCAACTCTTTGTGTGTAGTTTGAAAGGTT
CAGACGTATTTTTCACCATTCTACTTACCGAGTCTTATTGGGTCACAAAG
AAAGAAAGATCATGAGCAGTTTGTTTGTGGAGGAGGTAAATAAAATGGAT
TTCATTTTAGCACAAAAAGTCACTGCCACATGTTTTGAACTTTAGTTTAC
AGGAATTTATTTATCAAGTATACATTTGGATATGTGCATTTCCAATGTAC
GAGTTCTTAATATTCTTTTTCATTTGTGGTAATTTTCTGTTGGGTGATGA
ACTTCAAACAGAACAAATATAAGCAGCGGATTTGGGTTCGAGGAAGTCGA
CCAGAGGAAGAGGAGATATTTCAATTTACAATGGTTCAGGTTTGATCATT
ATAGTCCTTGTTAACCATGTACTGTTTCCATTTACAATGTTTTATTTGGT
GTTGTTAAATTATCAAAATTCACCAAGCAATTAGACCATGCAATAGATGG
TTTATATGCCCCAATCCGTTGGGTCTATACTGTAGAGAGACTATGTAATA
CATTATGTGCATGTTTTGAATTTGGATGCATTCTGAGTTGTGCTCTTATC
AAACAATGTCAAATGTTTTTTTTTTTAAGAATGTCAAATGTTAATAGACA
GAATAGGGTAGTTAGTCGAGTTTGAGCATTGTGGATTGCTAGAGGATGAT
TTAACTTCGATAGACCTGTGCTTAGTTCAATGATAATATGAAACAAAAAT
GTTATTTGATCATCAATTTGGGACGACAGAATTCAAAAACTTTTTTTAAT
CTTCAGATAAGTGATTAATGAACTTGGTTAACCATAATGTTTAAGTGTTA
AAATCTACATGTAGTTGGAAGACTTTTGATCGTGGTTAATAATGCTCAAT
TAATGGTTTATGAATCATCTCATCTTGATGTACTCATTAACCACTCATTG
AACTGTGTTAATCATTTAAAGTGTTGTCGAATTTTGTGTCTCAAATTGAT
GTTCAAGTAATATTTCTAAATATGAAATTATGAACTATTTATTGTTTTTT
TTTATCAGTTCCGTGTTATTGTCTGATTTGTCACTAGTATCCATCTCTTG
TTGTTTTTGGCAGAGGGTTGGCGGTTGCTGGGATGGTTATTGGCTGACAG
AGTCTCTGCTTCACGACAGGGATACATTTTCTGGTGGGGTGGCATATTGA
TTACAAAACATTCAATAAAGGAGTCAGTTTCATGAAGCTCCATTGCCAAA
ACATAAAGTGACATGCTATTACTATCCTAATCCTCTGTAAAGTTTGTACA
TACATATATATA
back to top

Coding sequence (CDS) from alignment at Ca_LG_5:44053780..44055891-

>Ca_15029.1_ICC4958_v2 ID=Ca_15029.1_ICC4958_v2; Name=Ca_15029.1; organism=Cicer arietinum; type=CDS; length=582bp; location=Sequence derived from: Ca_LG_5:44053780..44055891- (Cicer arietinum
ATGTCGTTTGGGTCTTCTCTGTTATCTCCTCCGATGCATATTGTTTACCG
AAAACAAAACAGAACCTCTCGCACTCTCTTCAAAGTCTCCGCAAACGTTC
CCGATTTTCTTTCTGCAGACTGGTTTGAATCTCGCAAGAAAAAACCCTTT
GGTCCGAGATTAGATTTCACTGCAGAAGATGCTGTTCATCATCAGCTTCA
AGCGTTGAAGTACAACGACCAACCCCGTCAAGATTATGGAATTGAAGTTA
TGTATAGGTTTGCTGGATTTGATCCTTTTGAAAGGTCAACCTATTTTGGC
CCATTCTTTGATCTTGGTCAGTTTGAAAGGTTCAGACGTATTTTTCACCA
TTCTACTTACCGAGTCTTATTGGGTCACAAAGAAAGAAAGATCATGAGCA
GTTTGTTTGTGGAGGAGAACAAATATAAGCAGCGGATTTGGGTTCGAGGA
AGTCGACCAGAGGAAGAGGAGATATTTCAATTTACAATGGTTCAGAGGGT
TGGCGGTTGCTGGGATGGTTATTGGCTGACAGAGTCTCTGCTTCACGACA
GGGATACATTTTCTGGTGGGGTGGCATATTGA
back to top