Ca_18032.1, Ca_18032.1_ICC4958_v2 (mRNA) Cicer arietinum

Transcript Overview
NameCa_18032.1
Unique NameCa_18032.1_ICC4958_v2
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length3623
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca_LG_6supercontigCa_LG_6:38524149..38527771 -Cicer arietinum ICC 4958 genome v2n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum ICC 4958 genome v22015-08-11
InterProScan: C. arietinum ICC 4958, v2.0 (desi)2019-05-21
BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot2019-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
caipsR595Pisum sativum Cameor genome v1aPisum sativum
caipsR631Pisum sativum Cameor genome v1aPisum sativum
caipsR720Pisum sativum Cameor genome v1aPisum sativum
caipvR0705Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caivuR0679Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caivuR0693Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caiccR0749Cajanus cajan Asha genome v1.0Cajanus cajan
ancaiL0337Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiL1255Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaiL184Vigna angularis Jingnong 6 genome v1.1Vigna angularis
caizwsR765Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
caitifR649Vicia faba cv. Tiffany genome v1.0Vicia faba
caitifR663Vicia faba cv. Tiffany genome v1.0Vicia faba
caivfhR651Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
caivfhR667Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
caitifR728Vicia faba cv. Tiffany genome v1.0Vicia faba
caivfhR740Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
caivrvR579Vigna radiata cv. VC1973A genome v6.0Vigna radiata
caivssR0740Vicia sativa cv. Studenica genome v1.0Vicia sativa
caivssR0779Vicia sativa cv. Studenica genome v1.0Vicia sativa
caivssR0800Vicia sativa cv. Studenica genome v1.0Vicia sativa
caivuaR635Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
caicanR0758Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
jg57375.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Psat07G0705300-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Phvul.010G154200.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-XM_014659651.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
evm.model.Chr10.1772Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vfaba.Tiffany.R1.2g206760.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vigun10g189000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vfaba.Hedin2.R1.2g264760.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-KK1_000192Cajanus cajan Asha genome v1.0Cajanus cajan
Psat7g255920.1Pisum sativum Cameor genome v1aPisum sativum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-XM_004506850.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Ca_18032Ca_18032_ICC4958_v2Cicer arietinumgene


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_18032.1.utr3p1Ca_18032.1.utr3p1_ICC4958_v2Cicer arietinumthree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_18032.1.cds4Ca_18032.1.cds4_ICC4958_v2Cicer arietinumCDS
Ca_18032.1.cds3Ca_18032.1.cds3_ICC4958_v2Cicer arietinumCDS
Ca_18032.1.cds2Ca_18032.1.cds2_ICC4958_v2Cicer arietinumCDS
Ca_18032.1.cds1Ca_18032.1.cds1_ICC4958_v2Cicer arietinumCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_18032.1.exon4Ca_18032.1.exon4_ICC4958_v2Cicer arietinumexon
Ca_18032.1.exon3Ca_18032.1.exon3_ICC4958_v2Cicer arietinumexon
Ca_18032.1.exon2Ca_18032.1.exon2_ICC4958_v2Cicer arietinumexon
Ca_18032.1.exon1Ca_18032.1.exon1_ICC4958_v2Cicer arietinumexon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_18032.1.utr5p1Ca_18032.1.utr5p1_ICC4958_v2Cicer arietinumfive_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_18032.1_ICC4958_v2Ca_18032.1_ICC4958_v2Cicer arietinumpolypeptide


Homology
[Close]
BLAST of Ca_18032.1 vs. DB:Swiss
Match: DEF1A_SOLLC (Peptide deformylase 1A, chloroplastic OS=Solanum lycopersicum OX=4081 GN=PDF1A PE=2 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 2.576e-116
Identity = 160/205 (78.05%), Postives = 181/205 (88.29%), Query Frame = 1 
Query:  136 RAGWFLGLTSDNKKKMNLPDTVKAGDPVLHEPAQEVDISEINSEKIQKIIDDMIRVMRKAPGVGLAAPQIGIPYRIIVLEDTKEYISYAPKEEIKAQDRRPFDLLVILNPKLKNKSNKTALFFEGCLSVDGYRAMVERYLDVEVTGLDRNGEPIKITASGWQARVLQHECDHLDGTLYVDKMVPRTFRIIENLDLPLAQGSPKLG 750
            RAGWFLGL    KKK  +PD VKAGDPVLHEP+Q++ + EI SE+IQKII++M++VMR APGVGLAAPQIGIP +IIVLEDT EYISYAPK+E KAQDRRPF LLVI+NPKLK K NKTALFFEGCLSVDG+RA+VER+L+VEVTGLDRNG+ IK+ ASGWQAR+LQHE DHLDGTLYVDKM PRTFR +ENLDLPLA G PKLG
Sbjct:   73 RAGWFLGL--GEKKKQAMPDIVKAGDPVLHEPSQDIPLEEIGSERIQKIIEEMVKVMRNAPGVGLAAPQIGIPLKIIVLEDTNEYISYAPKDETKAQDRRPFGLLVIINPKLKKKGNKTALFFEGCLSVDGFRAVVERHLEVEVTGLDRNGKAIKVDASGWQARILQHEYDHLDGTLYVDKMAPRTFRTVENLDLPLAAGCPKLG 275
[Close]
BLAST of Ca_18032.1 vs. DB:Swiss
Match: DEF1A_ARATH (Peptide deformylase 1A, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PDF1A PE=1 SV=3)

HSP 1 Score: 327.791 bits (839), Expect = 1.084e-112
Identity = 156/207 (75.36%), Postives = 181/207 (87.44%), Query Frame = 1 
Query:  136 RAGWFLGLTSDNKKKMNLPDTVKAGDPVLHEPAQEVDISEINSEKIQKIIDDMIRVMRKAPGVGLAAPQIGIPYRIIVLEDTKEYISYAPKEEIKAQDRRPFDLLVILNPKLKNKSNKTALFFEGCLSVDGYRAMVERYLDVEVTGLDRNGEPIKITASGWQARVLQHECDHLDGTLYVDKMVPRTFRIIENLDLPLAQGSPKLGPR 756
            +AGW LGL  + KKK++LP+ V +GDPVLHE A+EVD  EI SE+IQKIIDDMI+VMR APGVGLAAPQIG+P RIIVLEDTKEYISYAPKEEI AQ+RR FDL+V++NP LK +SNK ALFFEGCLSVDG+RA VERYL+V VTG DR G+ I++ ASGWQAR+LQHECDHLDG LYVDKMVPRTFR ++NLDLPLA+G PKLGP+
Sbjct:   64 KAGWLLGL-GEKKKKVDLPEIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLRIIVLEDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVDGFRAAVERYLEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKMVPRTFRTVDNLDLPLAEGCPKLGPQ 269
[Close]
BLAST of Ca_18032.1 vs. DB:Swiss
Match: DEF1A_ORYSJ (Peptide deformylase 1A, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PDF1A PE=2 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 6.712e-108
Identity = 147/189 (77.78%), Postives = 169/189 (89.42%), Query Frame = 1 
Query:  190 PDTVKAGDPVLHEPAQEVDISEINSEKIQKIIDDMIRVMRKAPGVGLAAPQIGIPYRIIVLEDTKEYISYAPKEEIKAQDRRPFDLLVILNPKLKNKSNKTALFFEGCLSVDGYRAMVERYLDVEVTGLDRNGEPIKITASGWQARVLQHECDHLDGTLYVDKMVPRTFRIIENLDLPLAQGSPKLGPR 756
            P TVKAGDPVLHEPAQ+V   +I SEK+Q +ID M+ VMRKAPGVGLAAPQIG+P +IIVLEDT+EYISYAPK++I+AQDRRPFDLLVI+NPKLK  S +TALFFEGCLSVDGYRA+VER+LDVEV+GLDRNG PIK+ ASGWQAR+LQHECDHL+GTLYVD MVPRTFRI++NLDLPL  G P +G R
Sbjct:   72 PGTVKAGDPVLHEPAQDVAPGDIPSEKVQGVIDRMVAVMRKAPGVGLAAPQIGVPLKIIVLEDTQEYISYAPKKDIEAQDRRPFDLLVIINPKLKTTSKRTALFFEGCLSVDGYRALVERHLDVEVSGLDRNGRPIKVEASGWQARILQHECDHLEGTLYVDTMVPRTFRIVDNLDLPLPVGCPPIGAR 260
[Close]
BLAST of Ca_18032.1 vs. DB:Swiss
Match: DEF1_GLOVI (Peptide deformylase 1 OS=Gloeobacter violaceus (strain PCC 7421) OX=251221 GN=def1 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.011e-47
Identity = 82/175 (46.86%), Postives = 113/175 (64.57%), Query Frame = 1 
Query:  193 DTVKAGDPVLHEPAQEVDISEINSEKIQKIIDDMIRVMRKAPGVGLAAPQIGIPYRIIVLEDTKEYISYAPKEEIKAQDRRPFDLLVILNPKLKNKSNKTALFFEGCLSVDGYRAMVERYLDVEVTGLDRNGEPIKITASGWQARVLQHECDHLDGTLYVDKMVPRTFRIIENLD 717
            + VK GDPVL   A+ ++  EI SE IQ++I  M   MR+APGVGLAAPQ+G+  +++V+ED  EYI      E + ++R P    V++NP L  +  ++A+FFEGCLS+ GY+ +V R   V V  LD    P+ I A GW AR+LQHE DHL+G L VD+M  +TF  +EN D
Sbjct:   47 EIVKTGDPVLRLTAKPLNSDEIQSEAIQQLIAAMAERMREAPGVGLAAPQVGVSVQLVVIEDRPEYIERLSGAERREREREPVPFHVLINPVLSVEGEESAVFFEGCLSIPGYQGLVARARVVRVEALDERAAPVVIRAHGWYARILQHEIDHLNGLLCVDRMDLQTFSTLENYD 221
[Close]
BLAST of Ca_18032.1 vs. DB:Swiss
Match: DEFM_HUMAN (Peptide deformylase, mitochondrial OS=Homo sapiens OX=9606 GN=PDF PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.880e-40
Identity = 66/167 (39.52%), Postives = 102/167 (61.08%), Query Frame = 1 
Query:  196 TVKAGDPVLHEPAQEVDISEINSEKIQKIIDDMIRVMRKAPGVGLAAPQIGIPYRIIVLEDTKEYISYAPKEEIKAQDRRPFDLLVILNPKLKNKSNKTALFFEGCLSVDGYRAMVERYLDVEVTGLDRNGEPIKITASGWQARVLQHECDHLDGTLYVDKMVPRTF 696
              + GDPVL   A  V+ +++   ++Q++   +++VMR+   VGL+APQ+G+P +++ LE  +      P  +   +   PF L V +NP L+   ++   F EGC SV G+ A V R+  V+++GLD NGE +   ASGW AR++QHE DHL G L++DKM  RTF
Sbjct:   67 VCQVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVLALELPEALCRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAVQISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMDSRTF 233
[Close]
BLAST of Ca_18032.1 vs. DB:Swiss
Match: DEF3_STRAW (Peptide deformylase 3 OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680) OX=227882 GN=def3 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.372e-36
Identity = 71/182 (39.01%), Postives = 104/182 (57.14%), Query Frame = 1 
Query:  199 VKAGDPVLHEPAQEVDISEINSEKIQKIIDDMIRVMRKAPGVGLAAPQIGIPYRIIVLEDTKEYISYAPKEEIKAQDRRPFDLLVILNPKLKNKSNKTALFFEGCLSVDGYRAMVERYLDVEVTGLDRNGEPIKITASGWQARVLQHECDHLDGTLYVDKMVPRTFRIIENLDLPLAQGSPK 744
            V AGDPVL   A+  D  ++    + + ++ +   M  APGVGLAAPQ+G+  RI V+ED        P+E    + R P    V++NP  +   +  A FFEGCLSV G++A+V R   V +T LD +G  +    +GW AR++QHE DHLDG LY+D+   R+    E + L  +Q +P+
Sbjct:   36 VAAGDPVLRRGAEPYD-GQLGPGLLARFVEALRLTMHAAPGVGLAAPQVGVGLRIAVIEDPAPV----PEEVGAVRGRVPQPFRVLVNPSYEAVGSDRAAFFEGCLSVPGWQAVVARPARVRLTALDEHGRAVDEEFTGWPARIVQHETDHLDGMLYLDRAELRSLSSNEAMALRWSQPTPE 212
[Close]
BLAST of Ca_18032.1 vs. DB:Swiss
Match: DEF1_STRCO (Peptide deformylase 1 OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) OX=100226 GN=def1 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.620e-35
Identity = 65/160 (40.62%), Postives = 94/160 (58.75%), Query Frame = 1 
Query:  199 VKAGDPVLHEPAQEVDISEINSEKIQKIIDDMIRVMRKAPGVGLAAPQIGIPYRIIVLEDTKEYISYAPKEEIKAQDRRPFDLLVILNPKLKNKSNKTALFFEGCLSVDGYRAMVERYLDVEVTGLDRNGEPIKITASGWQARVLQHECDHLDGTLYVDK 678
            V AGDPVL   A+  D  ++     ++ ++ +   M  APGVGLAAPQ+G+  R+ V+ED        P E   A+ R P    V++NP  +      A FFEGCLSV G++A+V R+ +V +   D +G  +    +GW AR++QHE DHLDGTLY+D+
Sbjct:   27 VAAGDPVLRRAAEPYD-GQVAPALFERFVEALRLTMHAAPGVGLAAPQVGVGLRVAVIEDPAPV----PDEVRVARGRVPQPFRVLVNPSYEPAGAGRAAFFEGCLSVPGWQAVVARHAEVRLRAHDEHGRAVDEVFAGWPARIVQHETDHLDGTLYLDR 181
[Close]
BLAST of Ca_18032.1 vs. DB:Swiss
Match: DEF1_BIFLO (Peptide deformylase 1 OS=Bifidobacterium longum (strain NCC 2705) OX=206672 GN=def1 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.684e-34
Identity = 69/173 (39.88%), Postives = 101/173 (58.38%), Query Frame = 1 
Query:  199 VKAGDPVLHEPAQEVDISEINSEKIQKIIDDMIRVMRKAPGVGLAAPQIGIPYRIIVLEDTKEYISYAPKEEIKAQDRRPFDLLVILNPKLKNKSNKTALFFEGCLSVDGYRAMVERYLDVEVTGLDRNGEPIKITASGWQARVLQHECDHLDGTLYVDKMVPRTFRIIENLD 717
            V+AG+PVL +     +  +++   + K+ID M   M +APGVGLAA QIG+   + V+ED      +   +E   ++   F   VI+NP  K  S+KTA F+EGCLS DGY+A+ +R+LD+     D +G+       GW AR+ QHE DHL G LY+D+   R+    ENL+
Sbjct:   32 VQAGEPVLRQRTVAYN-GQLSKRTLAKLIDTMHTTMLEAPGVGLAATQIGLGLALAVVED------HVRDDEDDPREIAEFPFHVIINPSYKPTSDKTASFYEGCLSFDGYQAVRKRWLDITAEWDDEDGKHHSEPLHGWPARIFQHETDHLSGELYIDRAEIRSLTTNENLE 197
[Close]
BLAST of Ca_18032.1 vs. DB:Swiss
Match: DEF_THEYD (Peptide deformylase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) OX=289376 GN=def PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.063e-32
Identity = 72/169 (42.60%), Postives = 105/169 (62.13%), Query Frame = 1 
Query:  181 MNLPDTVKAGDPVLHEPAQEVDISEINSEKIQKIIDDMIRVMRKAPGVGLAAPQIGIPYRIIVLEDTKEYISYAPKEEIKAQDRRPFDLLVILNPKLKNKSNKTALFFEGCLSVDGYRAMVERYLDVEVTGLDRNGEPIKITASGWQARVLQHECDHLDGTLYVDKMVP 687
            M + +  K  D VL + A+   ISEIN + +QK+ID+MI  M  A G+GLAAPQ+G+  R+IV       +  +P+E+ ++       L+V++NP++ + S    L  EGCLS+ G+   ++R   V V GLDRNG+ I+I A+G  AR LQHE DHLDG L +DK+ P
Sbjct:    1 MAILEIKKYPDEVLKKKAE--TISEINGD-LQKLIDNMIETMYNANGIGLAAPQVGVLKRLIV-------VDTSPREQNQS-------LIVLINPEITD-SEGEILSEEGCLSLPGFTTRLKRKERVIVKGLDRNGKEIEIEATGLLARALQHEIDHLDGILLIDKISP 151
[Close]
BLAST of Ca_18032.1 vs. DB:Swiss
Match: DEF_LEPIN (Peptide deformylase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) OX=189518 GN=def PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.893e-31
Identity = 71/182 (39.01%), Postives = 101/182 (55.49%), Query Frame = 1 
Query:  181 MNLPDTVKAGDPVLHEPAQEVDISEINSEKIQKIIDDMIRVMRKAPGVGLAAPQIGIPYRIIVL--EDTKEYISYAPKEEIKAQDRRPFDLLVILNPKLKNKSNKTALFFEGCLSVDGYRAMVERYLDVEVTGLDRNGEPIKITASGWQARVLQHECDHLDGTLYVDKMV-PRTFRIIENLD 717
            M++   ++ GDP+L + ++ V   EI +++ +K+I DM   MR A GVGLAAPQIGI  +I+V+  ED + Y       E            +ILNP +   +  T+ F+EGCLSV G R  VER   + +  +D  G     T  G++A V QHECDHL G LYVD++   + F   E LD
Sbjct:    1 MSVRKILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVVVGSEDNERYPGTPDVPE-----------RIILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDTKLFGFNETLD 171
The following BLAST results are available for this feature:
BLAST of Ca_18032.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
DEF1A_SOLLC2.576e-11678.05Peptide deformylase 1A, chloroplastic OS=Solanum l... [more]
DEF1A_ARATH1.084e-11275.36Peptide deformylase 1A, chloroplastic/mitochondria... [more]
DEF1A_ORYSJ6.712e-10877.78Peptide deformylase 1A, chloroplastic OS=Oryza sat... [more]
DEF1_GLOVI2.011e-4746.86Peptide deformylase 1 OS=Gloeobacter violaceus (st... [more]
DEFM_HUMAN7.880e-4039.52Peptide deformylase, mitochondrial OS=Homo sapiens... [more]
DEF3_STRAW6.372e-3639.01Peptide deformylase 3 OS=Streptomyces avermitilis ... [more]
DEF1_STRCO4.620e-3540.63Peptide deformylase 1 OS=Streptomyces coelicolor (... [more]
DEF1_BIFLO2.684e-3439.88Peptide deformylase 1 OS=Bifidobacterium longum (s... [more]
DEF_THEYD3.063e-3242.60Peptide deformylase OS=Thermodesulfovibrio yellows... [more]
DEF_LEPIN2.893e-3139.01Peptide deformylase OS=Leptospira interrogans sero... [more]
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InterPro
Analysis Name: InterProScan: C. arietinum ICC 4958, v2.0 (desi)
Date Performed: 2019-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023635Peptide deformylasePRINTSPR01576PDEFORMYLASEcoord: 96..125
score: 47.1
coord: 200..229
score: 46.48
coord: 169..180
score: 57.56
coord: 181..199
score: 38.01
IPR023635Peptide deformylasePFAMPF01327Pep_deformylasecoord: 67..230
e-value: 1.1E-50
score: 171.3
IPR023635Peptide deformylaseTIGRFAMTIGR00079TIGR00079coord: 67..229
e-value: 3.1E-37
score: 125.6
IPR023635Peptide deformylasePANTHERPTHR10458PEPTIDE DEFORMYLASEcoord: 31..244
IPR023635Peptide deformylaseHAMAPMF_00163Pep_deformylasecoord: 62..238
score: 27.546
IPR023635Peptide deformylaseCDDcd00487Pep_deformylasecoord: 67..223
e-value: 3.3917E-66
score: 200.02
IPR036821Peptide deformylase superfamilyGENE3D3.90.45.10coord: 61..251
e-value: 1.4E-73
score: 248.1
IPR036821Peptide deformylase superfamilySUPERFAMILY56420Peptide deformylasecoord: 59..235
NoneNo IPR availablePANTHERPTHR10458:SF11PEPTIDE DEFORMYLASE, MITOCHONDRIALcoord: 31..244

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_18032.1_ICC4958_v2 ID=Ca_18032.1_ICC4958_v2; Name=Ca_18032.1; organism=Cicer arietinum; type=mRNA; length=3623bp
ATCAAATAACAGAGAAAAGAATCATAAGAAAATGCATACCATACACTTTG
AGTGTATAGTTCCACTATCAATAACCAAAAACTCTCTCTTTACACACAAA
ACAACAACCCCATTATCCCTATTAACCTTATCATCATCATCTTCTCAAAA
TTCCACTGTTAGAACAAGAGCAGGTTGGTTTTTAGGTCTAACATCAGATA
ACAAGAAGAAGATGAATTTGCCTGATACTGTTAAAGCTGGTGACCCTGTT
TTGCATGAGCCTGCTCAAGAAGTTGATATTAGTGAGATTAATTCTGAGAA
AATTCAGAAAATTATTGATGATATGATTAGGGTTATGAGGAAAGCTCCTG
GTGTTGGTTTAGCTGCTCCTCAAATTGGAATTCCTTATAGGGTTAGTTTC
ATTTTTTATTTATTTACTTTTTTATGATTTTTGTATTTTCTCACTTACTC
TTTTTTCAATTTTGTTCATTTATTTCAATTTTGTTCATTTATTTCAATTT
TGTTCCTTTATCATGTCTCACTTACTCTAGCTCAATTTCCCTATGTGTAA
GTGTGTGTGTGTTTGTGCAATATTGTGGTAAAGATTTTGATACTTAAATG
TGTGAGGCGCTGTCATAGTAGTTCTTAAAAGTATTAAAATTTGAAAAATA
TGTTTGAATGTGTCTTTCCTTGGTTAATTTGACACTTGAATGTGTCATTC
CGTCTCTTAGTTAGTTTGGTGCTCCAATGTGTCTTTTGTTAGTCAATTTA
GTTGTCAAATGTGTCTTTTACTAACAAAAACGCACTCAAGAATGATGTTT
TTGTAATTTCGATGCATTCGATGACTATAGGAACAATGCCTCACATTAAG
GAACCACAATGATTGTTTAATCCATAGTTTATTTATTAATTCAATCATCA
CCGTTATTAGCATCATTATCATAATGTTGCAGCTTGAATAAAATAGTTCG
AGAGTGTGAATCACCAATTTAGTTTTGAAAGTGTAGAGTGTTGTAAGTTT
ATGAAATTATTAATATTTTAAAATAGTTCATGAAATTGAAAATTTTCTAT
TATATTAGTCTTTTTGGATCAGTCAGTTAGACTCTGTTTGGATAAATAAA
TTAATTTAATGTTTCTAACATAAACATGTATATGTAAGTTCCTGTATATA
ACATTATAAGTCATAATGTGTTTTCATAAGCTATTCTACAGACCTTATGG
AAATAAGTTGAAAACAACTTATGGACACATTATAAATTGTTTCCATAAGT
TCTTTAAAATAGTCTCATAAGTACTTATGTCAATAGATAAGCTCAAATAA
GTTAATTCAAACATACCTTAGTCTCTAAAGTTGTCTTGAAAGAACTAATG
TGATTGAGAATTTTCAAATCTAGAGTTCATTTTAATATTTAGTTAATATC
AGGGATCAAGTTGACGGCGCCCTATAATTTCAAAGACTAAAATAGTGATT
TGCTTAATATTTTCAAAGAGCTAAGTTAATTGTCTAAGTCATATAAGTAA
GTTATTTAAAAGTCTTAATCACACTTCAAATAAAAAATAAGGAGAAGAAG
CAAAAAGGGTGAATAAGCTTCGTGTGAATTGCAGTGCTGTCATATATCGG
CGATGCCATTGCGAGGTTTGGTGGTGGATTTATTGACAACCACGATGATC
AATTTGTGAAGGATGGCGGCGCCATGGTGTTTTATGGCGGCTTAACTGCT
TTGTATGGAGCATTCTCGGCTTTCTGCAATCCGCCACCGATAACATTGGT
GAACTGATGCTCCAATAGATTAAGGGTGTACTTATTTTGTTAAGGCTGAG
AATTTAGAATGAAAGTGCTTCATGATTTCTTGCTTATAGCAACAATACTG
TTGGAAAATTGAAAGTGAATTTATGGAACTCACTTTCACTCCAACTTAAT
TTTATTTTTTGTTTTTGCATTCCTACAATTTGAAAGTGAGTTGAAGTTTG
TATTTTACATGTATGCAGATAATTGTTTTGGAAGATACCAAAGAGTATAT
TAGTTATGCCCCAAAGGAAGAAATAAAAGCACAAGATAGAAGACCTTTTG
ATCTTTTGGTATGTTCATATGCTGAGAAAAAGGGGAATTTTAATCGTAAA
TATTTACTTTTATCTTAAAGTTTCGTTACTTTAATACATATTTTGTCGGT
TCTCTTGACACAGGTGATCTTGAATCCCAAGCTGAAGAATAAGAGCAACA
AAACTGCCCTATTTTTTGAAGGGTGTTTGAGGTGTGACAATGTTTAACTT
TTTTTCATTTTTCCATCTTTGATTAATGGCTAAAGAGTATTAATTGTTAG
TTTCTTCCACATACAAGTTTTCTCAACTCGCTGATAGCTCTTACTTGGCA
TCCCTGCATTGTAATGAATTCATACTAATTGGTCAACTTTTACTTATCTC
CCGGTCAAACTCTGGATTACTAGGCTCTTAATTCCCCTTGGAAATGGATG
GTTAAAACAAAAGAAAAATAGTAGTTTTGATAATATCAGAAAATTAATCT
GCATATGCTTAGATGGTTTAACATTTTAAAACATTAGAATTACCACATTG
CTCCTATGCTTGATGCTTCAAGTACTGATCTAAAATCTGAATGTTTGATA
TATTGCTAGTCTAGCTTGCACACGCTATGTATTCTGATGCAAACCTATAT
TTGTTTTATTTTTATAATTTGATGTTCGGTATCCATGATCTTTATGGTGA
CTGAAGCTATAAGCATTTCTAAATTTTAACTTGTCAATAGTGAAGTACCA
TGATTATAATGTTTGAACATGGCTTCAATTCCCAAACTAGCTTTTGAAAC
AGTATAGTGAGATATCTTAATGTCATCTAGTTTTTTATAACTCAAATGAC
ATGATGGATTACTGATGTAAGTTAGTAGCTTTTTCAATCAAATCTGCATT
TGAAAAAACAATAGATTTGAACTTATGAAGCACTAACACAAACATATACA
CCAAATACTGCACTAACACTAACACATAGACACCAACAATAATTTGAGAT
AGTAGAAGTCATTGAATGTAAACCACGTACATCGTGTCATTGTCAAATAC
CGACATGTGTCAGACACCGAACATGCCTTTAATCTTGAGTGTCAGTGCTA
TACATAGTTCTGGACCGTTCAATTTTTGTGATTTACGTAAAGAAAAAATG
TGTGAAACAACATTTACATGATTCTTTGGTCTAGGGCACCATTAACATGT
TCAGTTGTTAAAACATCTTGCAGTGTTGATGGATATAGAGCTATGGTGGA
GCGATACCTTGACGTTGAAGTTACAGGTTTGGATCGTAATGGCGAACCAA
TCAAAATAACTGCTTCTGGATGGCAGGCCCGGGTTTTACAACATGAATGT
GATCACTTGGATGGAACTCTATATGTTGATAAGATGGTACCTAGAACTTT
CAGAATCATTGAAAATTTGGACCTACCTCTTGCACAAGGGAGCCCGAAAC
TTGGTCCTCGGTAACCCAAGTTTTGCAACTCGCCGCCTCGGATAAGCCCA
TAAACCAGGTTTCTTGTGCATGTTAGTCAAAATTTTACATTTGTAGATCC
CAAAATGTAGACCAGATTCAATGTGTTATAATTACTCTTGATTTGAGAAT
AATCATCAATTTTCAATGTCGAA
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protein sequence of Ca_18032.1_ICC4958_v2

>Ca_18032.1_ICC4958_v2 ID=Ca_18032.1_ICC4958_v2; Name=Ca_18032.1_ICC4958_v2; organism=Cicer arietinum; type=polypeptide; length=252bp
MHTIHFECIVPLSITKNSLFTHKTTTPLSLLTLSSSSSQNSTVRTRAGWF
LGLTSDNKKKMNLPDTVKAGDPVLHEPAQEVDISEINSEKIQKIIDDMIR
VMRKAPGVGLAAPQIGIPYRIIVLEDTKEYISYAPKEEIKAQDRRPFDLL
VILNPKLKNKSNKTALFFEGCLSVDGYRAMVERYLDVEVTGLDRNGEPIK
ITASGWQARVLQHECDHLDGTLYVDKMVPRTFRIIENLDLPLAQGSPKLG
PR
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mRNA from alignment at Ca_LG_6:38524149..38527771-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_18032.1_ICC4958_v2 ID=Ca_18032.1_ICC4958_v2; Name=Ca_18032.1; organism=Cicer arietinum; type=mRNA; length=3623bp; location=Sequence derived from: Ca_LG_6:38524149..38527771- (Cicer arietinum
ATCAAATAACAGAGAAAAGAATCATAAGAAAATGCATACCATACACTTTG
AGTGTATAGTTCCACTATCAATAACCAAAAACTCTCTCTTTACACACAAA
ACAACAACCCCATTATCCCTATTAACCTTATCATCATCATCTTCTCAAAA
TTCCACTGTTAGAACAAGAGCAGGTTGGTTTTTAGGTCTAACATCAGATA
ACAAGAAGAAGATGAATTTGCCTGATACTGTTAAAGCTGGTGACCCTGTT
TTGCATGAGCCTGCTCAAGAAGTTGATATTAGTGAGATTAATTCTGAGAA
AATTCAGAAAATTATTGATGATATGATTAGGGTTATGAGGAAAGCTCCTG
GTGTTGGTTTAGCTGCTCCTCAAATTGGAATTCCTTATAGGGTTAGTTTC
ATTTTTTATTTATTTACTTTTTTATGATTTTTGTATTTTCTCACTTACTC
TTTTTTCAATTTTGTTCATTTATTTCAATTTTGTTCATTTATTTCAATTT
TGTTCCTTTATCATGTCTCACTTACTCTAGCTCAATTTCCCTATGTGTAA
GTGTGTGTGTGTTTGTGCAATATTGTGGTAAAGATTTTGATACTTAAATG
TGTGAGGCGCTGTCATAGTAGTTCTTAAAAGTATTAAAATTTGAAAAATA
TGTTTGAATGTGTCTTTCCTTGGTTAATTTGACACTTGAATGTGTCATTC
CGTCTCTTAGTTAGTTTGGTGCTCCAATGTGTCTTTTGTTAGTCAATTTA
GTTGTCAAATGTGTCTTTTACTAACAAAAACGCACTCAAGAATGATGTTT
TTGTAATTTCGATGCATTCGATGACTATAGGAACAATGCCTCACATTAAG
GAACCACAATGATTGTTTAATCCATAGTTTATTTATTAATTCAATCATCA
CCGTTATTAGCATCATTATCATAATGTTGCAGCTTGAATAAAATAGTTCG
AGAGTGTGAATCACCAATTTAGTTTTGAAAGTGTAGAGTGTTGTAAGTTT
ATGAAATTATTAATATTTTAAAATAGTTCATGAAATTGAAAATTTTCTAT
TATATTAGTCTTTTTGGATCAGTCAGTTAGACTCTGTTTGGATAAATAAA
TTAATTTAATGTTTCTAACATAAACATGTATATGTAAGTTCCTGTATATA
ACATTATAAGTCATAATGTGTTTTCATAAGCTATTCTACAGACCTTATGG
AAATAAGTTGAAAACAACTTATGGACACATTATAAATTGTTTCCATAAGT
TCTTTAAAATAGTCTCATAAGTACTTATGTCAATAGATAAGCTCAAATAA
GTTAATTCAAACATACCTTAGTCTCTAAAGTTGTCTTGAAAGAACTAATG
TGATTGAGAATTTTCAAATCTAGAGTTCATTTTAATATTTAGTTAATATC
AGGGATCAAGTTGACGGCGCCCTATAATTTCAAAGACTAAAATAGTGATT
TGCTTAATATTTTCAAAGAGCTAAGTTAATTGTCTAAGTCATATAAGTAA
GTTATTTAAAAGTCTTAATCACACTTCAAATAAAAAATAAGGAGAAGAAG
CAAAAAGGGTGAATAAGCTTCGTGTGAATTGCAGTGCTGTCATATATCGG
CGATGCCATTGCGAGGTTTGGTGGTGGATTTATTGACAACCACGATGATC
AATTTGTGAAGGATGGCGGCGCCATGGTGTTTTATGGCGGCTTAACTGCT
TTGTATGGAGCATTCTCGGCTTTCTGCAATCCGCCACCGATAACATTGGT
GAACTGATGCTCCAATAGATTAAGGGTGTACTTATTTTGTTAAGGCTGAG
AATTTAGAATGAAAGTGCTTCATGATTTCTTGCTTATAGCAACAATACTG
TTGGAAAATTGAAAGTGAATTTATGGAACTCACTTTCACTCCAACTTAAT
TTTATTTTTTGTTTTTGCATTCCTACAATTTGAAAGTGAGTTGAAGTTTG
TATTTTACATGTATGCAGATAATTGTTTTGGAAGATACCAAAGAGTATAT
TAGTTATGCCCCAAAGGAAGAAATAAAAGCACAAGATAGAAGACCTTTTG
ATCTTTTGGTATGTTCATATGCTGAGAAAAAGGGGAATTTTAATCGTAAA
TATTTACTTTTATCTTAAAGTTTCGTTACTTTAATACATATTTTGTCGGT
TCTCTTGACACAGGTGATCTTGAATCCCAAGCTGAAGAATAAGAGCAACA
AAACTGCCCTATTTTTTGAAGGGTGTTTGAGGTGTGACAATGTTTAACTT
TTTTTCATTTTTCCATCTTTGATTAATGGCTAAAGAGTATTAATTGTTAG
TTTCTTCCACATACAAGTTTTCTCAACTCGCTGATAGCTCTTACTTGGCA
TCCCTGCATTGTAATGAATTCATACTAATTGGTCAACTTTTACTTATCTC
CCGGTCAAACTCTGGATTACTAGGCTCTTAATTCCCCTTGGAAATGGATG
GTTAAAACAAAAGAAAAATAGTAGTTTTGATAATATCAGAAAATTAATCT
GCATATGCTTAGATGGTTTAACATTTTAAAACATTAGAATTACCACATTG
CTCCTATGCTTGATGCTTCAAGTACTGATCTAAAATCTGAATGTTTGATA
TATTGCTAGTCTAGCTTGCACACGCTATGTATTCTGATGCAAACCTATAT
TTGTTTTATTTTTATAATTTGATGTTCGGTATCCATGATCTTTATGGTGA
CTGAAGCTATAAGCATTTCTAAATTTTAACTTGTCAATAGTGAAGTACCA
TGATTATAATGTTTGAACATGGCTTCAATTCCCAAACTAGCTTTTGAAAC
AGTATAGTGAGATATCTTAATGTCATCTAGTTTTTTATAACTCAAATGAC
ATGATGGATTACTGATGTAAGTTAGTAGCTTTTTCAATCAAATCTGCATT
TGAAAAAACAATAGATTTGAACTTATGAAGCACTAACACAAACATATACA
CCAAATACTGCACTAACACTAACACATAGACACCAACAATAATTTGAGAT
AGTAGAAGTCATTGAATGTAAACCACGTACATCGTGTCATTGTCAAATAC
CGACATGTGTCAGACACCGAACATGCCTTTAATCTTGAGTGTCAGTGCTA
TACATAGTTCTGGACCGTTCAATTTTTGTGATTTACGTAAAGAAAAAATG
TGTGAAACAACATTTACATGATTCTTTGGTCTAGGGCACCATTAACATGT
TCAGTTGTTAAAACATCTTGCAGTGTTGATGGATATAGAGCTATGGTGGA
GCGATACCTTGACGTTGAAGTTACAGGTTTGGATCGTAATGGCGAACCAA
TCAAAATAACTGCTTCTGGATGGCAGGCCCGGGTTTTACAACATGAATGT
GATCACTTGGATGGAACTCTATATGTTGATAAGATGGTACCTAGAACTTT
CAGAATCATTGAAAATTTGGACCTACCTCTTGCACAAGGGAGCCCGAAAC
TTGGTCCTCGGTAACCCAAGTTTTGCAACTCGCCGCCTCGGATAAGCCCA
TAAACCAGGTTTCTTGTGCATGTTAGTCAAAATTTTACATTTGTAGATCC
CAAAATGTAGACCAGATTCAATGTGTTATAATTACTCTTGATTTGAGAAT
AATCATCAATTTTCAATGTCGAA
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Coding sequence (CDS) from alignment at Ca_LG_6:38524149..38527771-

>Ca_18032.1_ICC4958_v2 ID=Ca_18032.1_ICC4958_v2; Name=Ca_18032.1; organism=Cicer arietinum; type=CDS; length=759bp; location=Sequence derived from: Ca_LG_6:38524149..38527771- (Cicer arietinum
ATGCATACCATACACTTTGAGTGTATAGTTCCACTATCAATAACCAAAAA
CTCTCTCTTTACACACAAAACAACAACCCCATTATCCCTATTAACCTTAT
CATCATCATCTTCTCAAAATTCCACTGTTAGAACAAGAGCAGGTTGGTTT
TTAGGTCTAACATCAGATAACAAGAAGAAGATGAATTTGCCTGATACTGT
TAAAGCTGGTGACCCTGTTTTGCATGAGCCTGCTCAAGAAGTTGATATTA
GTGAGATTAATTCTGAGAAAATTCAGAAAATTATTGATGATATGATTAGG
GTTATGAGGAAAGCTCCTGGTGTTGGTTTAGCTGCTCCTCAAATTGGAAT
TCCTTATAGGATAATTGTTTTGGAAGATACCAAAGAGTATATTAGTTATG
CCCCAAAGGAAGAAATAAAAGCACAAGATAGAAGACCTTTTGATCTTTTG
GTGATCTTGAATCCCAAGCTGAAGAATAAGAGCAACAAAACTGCCCTATT
TTTTGAAGGGTGTTTGAGTGTTGATGGATATAGAGCTATGGTGGAGCGAT
ACCTTGACGTTGAAGTTACAGGTTTGGATCGTAATGGCGAACCAATCAAA
ATAACTGCTTCTGGATGGCAGGCCCGGGTTTTACAACATGAATGTGATCA
CTTGGATGGAACTCTATATGTTGATAAGATGGTACCTAGAACTTTCAGAA
TCATTGAAAATTTGGACCTACCTCTTGCACAAGGGAGCCCGAAACTTGGT
CCTCGGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR023635Peptide_deformylase
IPR036821Peptide_deformylase_sf