Ca_22014.1, Ca_22014.1_ICC4958_v2 (mRNA) Cicer arietinum
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Ca_22014.1 vs. DB:Swiss
Match: WRKY6_ARATH (WRKY transcription factor 6 OS=Arabidopsis thaliana OX=3702 GN=WRKY6 PE=1 SV=1) HSP 1 Score: 284.648 bits (727), Expect = 9.412e-89 Identity = 214/429 (49.88%), Postives = 264/429 (61.54%), Query Frame = 1 Query: 73 DGNRIIVDELDFFSDRNDDKSSSPEQFDDVSIKNQLLSDPISPNVNTGLQLLIT-NTGSDESTVDDGSSIIAQEKRLKNEVESLQXXXXXXXXXXXXXXXMLNDVTTNYTTLQTRYASLMQQLQN------QPTESSQYEVVE------------GKAEE-NDCFSDEKTRSSTGQNNNKDEKEGDRESSEQQQMWESNKVNKLSTSNAT--DQSGVEATMRKARVSVRARSEANMISDGCQWRKYGQKMAKGNPCPRAYYRCTMNPGCPVRKQVQRCAEDRTILITTYEGAHNHXXXXXXXXXXXXXXXXXXXXXXGSMPSADGVIN-HNLITRAMFPKCSPSGMATLSASAPFPTVTLDLT--------------------QNNTXXXXXXXXCHSPFFPPQNCGSGGGQLPQVIAQALYNQSKFSG 1230 D +R + E+DFFSD K S + DD + + +VNTGL L T NT SDES +DDG S ++KR KNE+ LQ++L++ +N+ L+E+L V+ +YT+LQ SLMQQ Q + E + +V G+AE+ ++ S+++TRS G + + G R E+ ESNK+ K++++ T DQ+ EATMRKARVSVRARSEA MISDGCQWRKYGQKMAKGNPCPRAYYRCTM GCPVRKQVQRCAEDR+ILITTYEG HNH LPP A+AMASTT+AAA MLLSGSM S DG++N NL+ RA+ P CS S MAT+SASAPFPTVTLDLT N+ PP G LP VI QALYNQSKFSG Sbjct: 81 DNDREVPGEVDFFSD----KKSRVCREDDEGFRVKKEEQDDRTDVNTGLNLRTTGNTKSDESMIDDGESSEMEDKRAKNELVKLQDELKKMTMDNQKLRELLTQVSNSYTSLQMHLVSLMQQQQQQNNKVIEAAEKPEETIVPRQFIDLGPTRAVGEAEDVSNSSSEDRTRSG-GSSAAERRSNGKRLGREESPETESNKIQKVNSTTPTTFDQTA-EATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMATGCPVRKQVQRCAEDRSILITTYEGNHNHPLPPAAVAMASTTTAAANMLLSGSMSSHDGMMNPTNLLARAVLP-CSTS-MATISASAPFPTVTLDLTHSPPPPNGSNPSSSAATNNNHNSLMQRPQQQQQQMTNLPP-------GMLPHVIGQALYNQSKFSG 494
BLAST of Ca_22014.1 vs. DB:Swiss
Match: WRK31_ARATH (Probable WRKY transcription factor 31 OS=Arabidopsis thaliana OX=3702 GN=WRKY31 PE=2 SV=1) HSP 1 Score: 277.33 bits (708), Expect = 3.342e-86 Identity = 213/449 (47.44%), Postives = 265/449 (59.02%), Query Frame = 1 Query: 70 VDGNRIIVDELDFFSDRNDDKSSSPEQFDD-----VSIK---NQLLSDPISPNVNTGLQLLITNTGSDESTVDDGSSIIAQEKRLKNEVESLQXXXXXXXXXXXXXXXMLNDVTTNYTTLQTRYASLMQQLQNQPTESSQYEVVEGKAEEN---------------------------DCFSDEKTRSSTGQNNNKDEKEGDRESSEQ------------QQMWES-NKVNK----------LSTSNATDQSGVEATMRKARVSVRARSEANMISDGCQWRKYGQKMAKGNPCPRAYYRCTMNPGCPVRKQVQRCAEDRTILITTYEGAHNHXXXXXXXXXXXXXXXXXXXXXXGSMPSADGVIN-HNLITRAMFPKCSPSGMATLSASAPFPTVTLDLTQNNTXXXXXXXXCHSPFFPPQNCGSGGGQLPQVIAQALYN---QSKFSG 1230 +D +R++VDE+DFFS++ D S DD V IK +++ + S +VN GL LL NTGSDESTVDDG S+ ++KR K E LQE+L++ EN+ L++ML+ TTN+ LQ + ++M+Q + + + E KAE + S+E+T +G + E RE+ ++ W + NKV K N DQS EATMRKARVSVRARSEA MISDGCQWRKYGQKMAKGNPCPRAYYRCTM GCPVRKQVQRCAEDR+ILITTYEG HNH LPP A AMASTT+AAA+MLLSGSM S DG++N NL+ RA+ P CS S MAT+SASAPFPT+TLDLT + + Q G LPQV+ QA+YN QSKFSG Sbjct: 23 LDDHRVVVDEVDFFSEKRDRVSRENINDDDDEGNKVLIKMEGSRVEENDRSRDVNIGLNLLTANTGSDESTVDDGLSMDMEDKRAKIENAQLQEELKKMKIENQRLRDMLSQATTNFNALQMQLVAVMRQQEQRNSSQDHLLAQESKAEGRKRQELQIMVPRQFMDLGPSSGAAEHGAEVSSEERTTVRSGSPPSLLESSNPRENGKRLLGREESSEESESNAWGNPNKVPKHNPSSSNSNGNRNGNVIDQSAAEATMRKARVSVRARSEAAMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAGGCPVRKQVQRCAEDRSILITTYEGNHNHPLPPAATAMASTTTAAASMLLSGSMSSQDGLMNPTNLLARAILP-CS-SSMATISASAPFPTITLDLTNSPNGNNPNMTTNNPLMQFAQRPGFNPAVLPQVVGQAMYNNQQQSKFSG 469
BLAST of Ca_22014.1 vs. DB:Swiss
Match: WRK42_ARATH (WRKY transcription factor 42 OS=Arabidopsis thaliana OX=3702 GN=WRKY42 PE=1 SV=1) HSP 1 Score: 258.455 bits (659), Expect = 5.282e-79 Identity = 200/444 (45.05%), Postives = 264/444 (59.46%), Query Frame = 1 Query: 82 RIIVDELDFF-SDRNDDKSSSPEQ------FDDVSIKNQL-----LSDPISPNVNTGLQLLITNTGSDESTVDDGSSIIAQEKRLKNEVESLQXXXXXXXXXXXXXXXMLNDVTTNYTTLQTRYASLMQQ---------LQNQPTESSQYEV--------VEGKAEENDCFSDEKTRSSTGQNNNKDEKEGDRESSEQQQMWES------------NKVNKL--------------STSNATDQSGVEATMRKARVSVRARSEANMISDGCQWRKYGQKMAKGNPCPRAYYRCTMNPGCPVRKQVQRCAEDRTILITTYEGAHNHXXXXXXXXXXXXXXXXXXXXXXGS-MPSADGVIN-HNLITRAMFPKCSPSGMATLSASAPFPTVTLDLTQNNTXXXXXXXXCHSPFFPPQNCGSGGGQ--LPQVIAQALY--NQSKFSG 1230 R +V+E+DFF S D+ S EQ V +K + D + ++N GL LL NTGSDES VDDG S+ +EKR K E L+E+L++ +E+N+ LK+ML+ T N+ +LQ + ++M+Q +N +++EV ++ ++ S+E+T +G + EK R++ ++ + E NKV K ++S +Q+ EATMRKARVSVRARSEA M+SDGCQWRKYGQKMAKGNPCPRAYYRCTM GCPVRKQVQRCAEDRTILITTYEG HNH LPP A+ MASTT+AAA+MLLSGS M + DG++N NL+ R + P CS S MAT+SASAPFPT+TLDLT++ F ++ Q LP ++ QALY QSKFSG Sbjct: 25 RAVVNEVDFFRSAEKRDRVSREEQNIIADETHRVHVKRENSRVDDHDDRSTDHINIGLNLLTANTGSDESMVDDGLSVDMEEKRTKCENAQLREELKKASEDNQRLKQMLSQTTNNFNSLQMQLVAVMRQQEDHHHLATTENNDNVKNRHEVPEMVPRQFIDLGPHSDEVSSEERTTVRSGSPPSLLEKSSSRQNGKRVLVREESPETESNGWRNPNKVPKHHASSSICGGNGSENASSKVIEQAAAEATMRKARVSVRARSEAPMLSDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMNMASTTTAAASMLLSGSTMSNQDGLMNPTNLLARTILP-CS-SSMATISASAPFPTITLDLTESPNGNNPTNNPLMQ--FSQRSGLVELNQSVLPHMMGQALYYNQQSKFSG 464
BLAST of Ca_22014.1 vs. DB:Swiss
Match: WRK47_ARATH (Probable WRKY transcription factor 47 OS=Arabidopsis thaliana OX=3702 GN=WRKY47 PE=1 SV=2) HSP 1 Score: 176.407 bits (446), Expect = 2.057e-48 Identity = 137/355 (38.59%), Postives = 188/355 (52.96%), Query Frame = 1 Query: 91 VDELDFFSDRNDDKSSSPEQFDDVSIKNQLLSDPISPNVNTGLQLLITNTGSDESTVDDGSSIIAQEKRLKNEVESLQXXXXXXXXXXXXXXXMLNDVTTNYTTLQTRYASLMQQLQNQPTESSQYEVV----EGKAEENDCFSD--EKTRSSTGQNNNKDEKEG---DRESSEQQQMWESNKVNKLSTSNATDQSGVEATMRKARVSVRARSEANMISDGCQWRKYGQKMAKGNPCPRAYYRCTMNPGCPVRKQVQRCAEDRTILITTYEGAHNH------------XXXXXXXXXXXXXXXXXXXXXXGSMPSADGVINHNLITRAMFPKCSPSGMATLSASAPFPTVTLDLT 1092 + E+DFF+ ++ + FD ++ + S N GL L+ + G+ + DD + Q RLK E+E L E+ + +L++V+ +Y LQ R L +Q Q + Q+E V +A EN D +T ++T + + D+ +G R S + ++ ++ N N DQ RKARVSVRARS+A ++DGCQWRKYGQKMAKGNPCPRAYYRCTM GCPVRKQVQRCAED TIL TTYEG HNH A+ ++ ++S+ LS ++ HN FP S +ATLSASAPFPT+TLDLT Sbjct: 44 IKEVDFFAAKS-------QPFDLGHVRTTTIVG--SSGFNDGLGLVNSCHGTSSNDGDDKTK--TQISRLKLELERLHEENHKLKH-------LLDEVSESYNDLQRRVL-LARQTQVEGLHHKQHEDVPQAGSSQALENRRPKDMNHETPATTLKRRSPDDVDGRDMHRGSPKTPRIDQNKSTNHEEQQNPHDQ----LPYRKARVSVRARSDATTVNDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDTTILTTTYEGNHNHPLPPSATAMAATTSAAAAMLLSGSSSSNLHQTLSSPSATSSSSFYHN------FPYT--STIATLSASAPFPTITLDLT 367
BLAST of Ca_22014.1 vs. DB:Swiss
Match: WRK72_ARATH (Probable WRKY transcription factor 72 OS=Arabidopsis thaliana OX=3702 GN=WRKY72 PE=2 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 6.559e-39 Identity = 89/196 (45.41%), Postives = 124/196 (63.27%), Query Frame = 1 Query: 544 NNKDEKEG----DRESSEQQQMWESNKVNKLSTS-------NATDQSGVEATMRKARVSVRARSEANMISDGCQWRKYGQKMAKGNPCPRAYYRCTMNPGCPVRKQVQRCAEDRTILITTYEGAHNHX--XXXXXXXXXXXXXXXXXXXXXGSMPSADGVINHNLITRAMFPKCSPSGMATLSASAPFPTVTLDLT 1092 N + KEG +R +S ++ W KV +S +A ++G + +++ARV VRAR + ++DGCQWRKYGQK+AKGNPCPRAYYRCT+ PGCPVRKQVQRCA+D +ILITTYEG H+H+ L +A ++ +A+ + S S P+A+ +I +NL + F + S + S PTVTLDLT Sbjct: 158 NGGEPKEGLSMENRANSGSEEAWAPGKVTGKRSSPAPASGGDADGEAGQQNHVKRARVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCADDMSILITTYEGTHSHSLPLSATTMASTTSAAASMLLSGSSSSPAAE-MIGNNLYDNSRFNNNNKSFYSPTLHSPLHPTVTLDLT 352
BLAST of Ca_22014.1 vs. DB:Swiss
Match: WRKY9_ARATH (Probable WRKY transcription factor 9 OS=Arabidopsis thaliana OX=3702 GN=WRKY9 PE=2 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 1.503e-37 Identity = 61/74 (82.43%), Postives = 65/74 (87.84%), Query Frame = 1 Query: 670 RKARVSVRARSEANMISDGCQWRKYGQKMAKGNPCPRAYYRCTMNPGCPVRKQVQRCAEDRTILITTYEGAHNH 891 RKARVSVRAR E ++DGCQWRKYGQK AKGNPCPRAYYRCT+ PGCPVRKQVQRC ED +ILITTYEG HNH Sbjct: 219 RKARVSVRARCETATMNDGCQWRKYGQKTAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNH 292
BLAST of Ca_22014.1 vs. DB:Swiss
Match: WRK61_ARATH (Probable WRKY transcription factor 61 OS=Arabidopsis thaliana OX=3702 GN=WRKY61 PE=2 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 1.057e-33 Identity = 55/75 (73.33%), Postives = 65/75 (86.67%), Query Frame = 1 Query: 667 MRKARVSVRARSEANMISDGCQWRKYGQKMAKGNPCPRAYYRCTMNPGCPVRKQVQRCAEDRTILITTYEGAHNH 891 ++K RVSVR+R E ++DGCQWRKYGQK+AKGNPCPRAYYRCT+ CPVRKQVQRC+ED +ILI+TYEG HNH Sbjct: 174 VKKTRVSVRSRCETPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTIAASCPVRKQVQRCSEDMSILISTYEGTHNH 248
BLAST of Ca_22014.1 vs. DB:Swiss
Match: WRK36_ARATH (Probable WRKY transcription factor 36 OS=Arabidopsis thaliana OX=3702 GN=WRKY36 PE=2 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 2.830e-26 Identity = 76/218 (34.86%), Postives = 111/218 (50.92%), Query Frame = 1 Query: 370 MLNDVTTNYTTLQTRYASLMQQLQNQPTESSQYEVVEGKAEENDCFSDEKTR--SSTGQNNNKDEKEGDRESSE----------------QQQMWESNKVNKL---------------------STSNATDQSGVE----ATMRKARVSVRARSEANMISDGCQWRKYGQKMAKGNPCPRAYYRCTMNPGCPVRKQVQRCAEDRT-ILITTYEGAHNH 891 +L+ + NY +LQ + + ++ Q Q S + + ++ + E ND D R S + + K+E + D+ S++ Q Q +E++K++ L S N Q +E ++K RV V+A E I+DGCQWRKYGQK AK NP PRAYYRC+M+ CPVRKQVQRC E+ T +TTYEG H+H Sbjct: 46 LLSTILNNYNSLQMQVSKVLGQ--QQGASSMELDHIDRQDENNDYDVDISLRLGRSEQKISKKEENKVDKISTKNVEESKDKRSALGFGFQIQSYEASKLDDLCRQVKLANAENKCVSSRKDVKSVRNENHQDVLEEHEQTGLKKTRVCVKASCEDPSINDGCQWRKYGQKTAKTNPLPRAYYRCSMSSNCPVRKQVQRCGEEETSAFMTTYEGNHDH 261
BLAST of Ca_22014.1 vs. DB:Swiss
Match: WRK71_ORYSI (WRKY transcription factor WRKY71 OS=Oryza sativa subsp. indica OX=39946 GN=WRKY71 PE=1 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 1.531e-24 Identity = 41/60 (68.33%), Postives = 49/60 (81.67%), Query Frame = 1 Query: 712 MISDGCQWRKYGQKMAKGNPCPRAYYRCTMNPGCPVRKQVQRCAEDRTILITTYEGAHNH 891 ++ DG QWRKYGQK+ K NPCPRAY+RC+ P CPV+K+VQR AED TIL+ TYEG HNH Sbjct: 191 VVKDGYQWRKYGQKVTKDNPCPRAYFRCSFAPACPVKKKVQRSAEDNTILVATYEGEHNH 250
BLAST of Ca_22014.1 vs. DB:Swiss
Match: WRK71_ORYSJ (WRKY transcription factor WRKY71 OS=Oryza sativa subsp. japonica OX=39947 GN=WRKY71 PE=1 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 1.623e-24 Identity = 41/60 (68.33%), Postives = 49/60 (81.67%), Query Frame = 1 Query: 712 MISDGCQWRKYGQKMAKGNPCPRAYYRCTMNPGCPVRKQVQRCAEDRTILITTYEGAHNH 891 ++ DG QWRKYGQK+ K NPCPRAY+RC+ P CPV+K+VQR AED TIL+ TYEG HNH Sbjct: 191 VVKDGYQWRKYGQKVTKDNPCPRAYFRCSFAPACPVKKKVQRSAEDNTILVATYEGEHNH 250 The following BLAST results are available for this feature:
BLAST of Ca_22014.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: C. arietinum ICC 4958, v2.0 (desi)
Date Performed: 2019-05-21
Sequences
The
following sequences are available for this feature:
mRNA sequence >Ca_22014.1_ICC4958_v2 ID=Ca_22014.1_ICC4958_v2; Name=Ca_22014.1; organism=Cicer arietinum; type=mRNA; length=2249bpback to top protein sequence of Ca_22014.1_ICC4958_v2 >Ca_22014.1_ICC4958_v2 ID=Ca_22014.1_ICC4958_v2; Name=Ca_22014.1_ICC4958_v2; organism=Cicer arietinum; type=polypeptide; length=470bpback to top mRNA from alignment at Ca_LG_7:43584205..43586453+ Legend: five_prime_UTRexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Ca_22014.1_ICC4958_v2 ID=Ca_22014.1_ICC4958_v2; Name=Ca_22014.1; organism=Cicer arietinum; type=mRNA; length=2249bp; location=Sequence derived from: Ca_LG_7:43584205..43586453+ (Cicer arietinumback to top Coding sequence (CDS) from alignment at Ca_LG_7:43584205..43586453+ >Ca_22014.1_ICC4958_v2 ID=Ca_22014.1_ICC4958_v2; Name=Ca_22014.1; organism=Cicer arietinum; type=CDS; length=1413bp; location=Sequence derived from: Ca_LG_7:43584205..43586453+ (Cicer arietinumback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|