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Transcript Overview
Name | Cr_19530.1 |
Unique Name | Cr_19530.1_PI489777_v1 |
Type | mRNA |
Organism | Cicer reticulatum (wild chickpea) |
Sequence length | 768 |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
Cr_19530.1_PI489777_v1 | Cr_19530.1_PI489777_v1 | Cicer reticulatum | polypeptide |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: C. reticulatum PI489777 genome v1
Date Performed: 2019-05-28
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR016140 | Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain | SMART | SM00499 | aai_6 | coord: 16..99 e-value: 0.0055 score: 25.9 |
None | No IPR available | GENE3D | 1.10.110.10 | | coord: 18..101 e-value: 7.8E-18 score: 66.0 |
None | No IPR available | PANTHER | PTHR31731:SF1 | | coord: 33..100 |
None | No IPR available | PANTHER | PTHR31731 | FAMILY NOT NAMED | coord: 33..100 |
IPR027923 | Hydrophobic seed protein domain | PFAM | PF14547 | Hydrophob_seed | coord: 23..99 e-value: 1.7E-21 score: 76.2 |
IPR036312 | Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily | SUPERFAMILY | 47699 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin | coord: 29..100 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Cr_19530.1_PI489777_v1 ID=Cr_19530.1_PI489777_v1; Name=Cr_19530.1; organism=Cicer reticulatum; type=mRNA; length=768bp ATGGAGTCCTCATCAACATCAAAATTCTATGCTTACCTAATCATTTGCAT GCTGTTCATCTCTTCAGCCACACCAATTCTTGGTTGTGGCTATTGTGGTG GAGGAAAACCACCTAAAAAACACAAACCAGTTAAAAAACCAATTGTGAAA CCACCAGTGACAACTCCACCCATCACAGTCCCTCCAACTTTACCTATTCC ACCAATTGTGAAACCACCAATTTCCATACCACCAATAACAATTCCACCAA CTCTACCTATTCCTCCAATTGTGAAACCACCAATAGCAATTCCACCAACT TTGCCTATTCCTCCAATTGTACCAACTTTGCCACTACCTCCAATTGTGAA ACCACCAATAACAATTCCACCAAGTTTACCAATCCCTCCAATTCCAGGAC TCCCTCCAATTCCAGGAATCCCTCCAGTTCTTAACCCACCAAGCAAAGGA GGAAGCACACCTTCTTCTCCAAAAAGTCCTTGTCCACCATCAACAACACC TTCAACAAACACATGTCCAATTAACACTTTGAAATTAGGTGCTTGTGTTG ATTTACTAGGTGGATTGGTTCACATTGGTGTTGGTGACCCTGTTGTCAAT CAATGTTGTCCTGTTCTTCAAGGACTTGTTGAACTTGAAGCTGCTGCTTG TCTTTGCACTACTCTTAAGCTTAAGCTTCTTAACCTTAACATTTATGTTC CACTTGCTCTTCAGCTTCTTTTGGCTTGTGGAAAAACTCCTCCTCCTGGT TACACTTGTTCTCTCTAA back to topprotein sequence of Cr_19530.1_PI489777_v1 >Cr_19530.1_PI489777_v1 ID=Cr_19530.1_PI489777_v1; Name=Cr_19530.1_PI489777_v1; organism=Cicer reticulatum; type=polypeptide; length=101bp MESSSTSKFYAYLIICMLFISSATPILGCGYCGGLVHIGVGDPVVNQCCP VLQGLVELEAAACLCTTLKLKLLNLNIYVPLALQLLLACGKTPPPGYTCS L back to topmRNA from alignment at Cr_LG_7:26687301..26688068- Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >Cr_19530.1_PI489777_v1 ID=Cr_19530.1_PI489777_v1; Name=Cr_19530.1; organism=Cicer reticulatum; type=mRNA; length=768bp; location=Sequence derived from: Cr_LG_7:26687301..26688068- (Cicer reticulatum ATGGAGTCCTCATCAACATCAAAATTCTATGCTTACCTAATCATTTGCAT
GCTGTTCATCTCTTCAGCCACACCAATTCTTGGTTGTGGCTATTGTGGTG
GAGGAAAACCACCTAAAAAACACAAACCAGTTAAAAAACCAATTGTGAAA
CCACCAGTGACAACTCCACCCATCACAGTCCCTCCAACTTTACCTATTCC
ACCAATTGTGAAACCACCAATTTCCATACCACCAATAACAATTCCACCAA
CTCTACCTATTCCTCCAATTGTGAAACCACCAATAGCAATTCCACCAACT
TTGCCTATTCCTCCAATTGTACCAACTTTGCCACTACCTCCAATTGTGAA
ACCACCAATAACAATTCCACCAAGTTTACCAATCCCTCCAATTCCAGGAC
TCCCTCCAATTCCAGGAATCCCTCCAGTTCTTAACCCACCAAGCAAAGGA
GGAAGCACACCTTCTTCTCCAAAAAGTCCTTGTCCACCATCAACAACACC
TTCAACAAACACATGTCCAATTAACACTTTGAAATTAGGTGCTTGTGTTG
ATTTACTAGGTGGATTGGTTCACATTGGTGTTGGTGACCCTGTTGTCAAT
CAATGTTGTCCTGTTCTTCAAGGACTTGTTGAACTTGAAGCTGCTGCTTG
TCTTTGCACTACTCTTAAGCTTAAGCTTCTTAACCTTAACATTTATGTTC
CACTTGCTCTTCAGCTTCTTTTGGCTTGTGGAAAAACTCCTCCTCCTGGT
TACACTTGTTCTCTCTAA back to topCoding sequence (CDS) from alignment at Cr_LG_7:26687301..26688068- >Cr_19530.1_PI489777_v1 ID=Cr_19530.1_PI489777_v1; Name=Cr_19530.1; organism=Cicer reticulatum; type=CDS; length=306bp; location=Sequence derived from: Cr_LG_7:26687301..26688068- (Cicer reticulatum ATGGAGTCCTCATCAACATCAAAATTCTATGCTTACCTAATCATTTGCAT GCTGTTCATCTCTTCAGCCACACCAATTCTTGGTTGTGGCTATTGTGGTG GATTGGTTCACATTGGTGTTGGTGACCCTGTTGTCAATCAATGTTGTCCT GTTCTTCAAGGACTTGTTGAACTTGAAGCTGCTGCTTGTCTTTGCACTAC TCTTAAGCTTAAGCTTCTTAACCTTAACATTTATGTTCCACTTGCTCTTC AGCTTCTTTTGGCTTGTGGAAAAACTCCTCCTCCTGGTTACACTTGTTCT CTCTAA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
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