Cr_19530.1, Cr_19530.1_PI489777_v1 (mRNA) Cicer reticulatum

Transcript Overview
NameCr_19530.1
Unique NameCr_19530.1_PI489777_v1
TypemRNA
OrganismCicer reticulatum (wild chickpea)
Sequence length768
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Cr_LG_7supercontigCr_LG_7:26687301..26688068 -Cicer reticulatum L. PI489777 genome v1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer reticulatum L. PI489777 genome v12016-08-26
BLAST: C. reticulatum PI489777 genome v1 Swissprot2019-05-21
InterProScan: C. reticulatum PI489777 genome v12019-05-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
crpsR714Pisum sativum Cameor genome v1aPisum sativum
crvuR795Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
crvuR857Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
crpvR838Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
crpvR904Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
cccrL0497Cajanus cajan Asha genome v1.0Cajanus cajan
ancrL0058Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancrL0059Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancrL0294Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancrL0415Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancrL0486Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascrL098Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascrL676Vigna angularis Jingnong 6 genome v1.1Vigna angularis
crzwsR749Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
crzwsR781Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
crtifR755Vicia faba cv. Tiffany genome v1.0Vicia faba
crtifR757Vicia faba cv. Tiffany genome v1.0Vicia faba
crtifR795Vicia faba cv. Tiffany genome v1.0Vicia faba
crvfhR768Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
crvfhR771Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
crvfhR808Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
crvrvR719Vigna radiata cv. VC1973A genome v6.0Vigna radiata
crvrvR730Vigna radiata cv. VC1973A genome v6.0Vigna radiata
crvssR843Vicia sativa cv. Studenica genome v1.0Vicia sativa
crvssR853Vicia sativa cv. Studenica genome v1.0Vicia sativa
crvuaR790Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
crvuaR833Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cancrL572Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cancrL820Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
rna-KK1_033503Cajanus cajan Asha genome v1.0Cajanus cajan
rna-TanjilR_26234Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
LR48_mrnaVigan01g255200Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-TanjilR_06994Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Phvul.009G092000.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Phvul.003G169100.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vfaba.Tiffany.R1.4g136800.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-XM_014650007.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
jg55369.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-XM_004508400.2Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Psat04G0126200-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
rna-XM_014644246.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vigun03g360100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-TanjilR_13344Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vfaba.Hedin2.R1.4g181000.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Cr_19530Cr_19530_PI489777_v1Cicer reticulatumgene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cr_19530.1:cds2Cr_19530.1:cds2_PI489777_v1Cicer reticulatumCDS
Cr_19530.1:cds1Cr_19530.1:cds1_PI489777_v1Cicer reticulatumCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cr_19530.1:exon2Cr_19530.1:exon2_PI489777_v1Cicer reticulatumexon
Cr_19530.1:exon1Cr_19530.1:exon1_PI489777_v1Cicer reticulatumexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Cr_19530.1_PI489777_v1Cr_19530.1_PI489777_v1Cicer reticulatumpolypeptide


Homology
The following BLAST results are available for this feature:
BLAST of Cr_19530.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. reticulatum PI489777 genome v1 Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: C. reticulatum PI489777 genome v1
Date Performed: 2019-05-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainSMARTSM00499aai_6coord: 16..99
e-value: 0.0055
score: 25.9
NoneNo IPR availableGENE3D1.10.110.10coord: 18..101
e-value: 7.8E-18
score: 66.0
NoneNo IPR availablePANTHERPTHR31731:SF1coord: 33..100
NoneNo IPR availablePANTHERPTHR31731FAMILY NOT NAMEDcoord: 33..100
IPR027923Hydrophobic seed protein domainPFAMPF14547Hydrophob_seedcoord: 23..99
e-value: 1.7E-21
score: 76.2
IPR036312Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamilySUPERFAMILY47699Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumincoord: 29..100

Sequences
The following sequences are available for this feature:

mRNA sequence

>Cr_19530.1_PI489777_v1 ID=Cr_19530.1_PI489777_v1; Name=Cr_19530.1; organism=Cicer reticulatum; type=mRNA; length=768bp
ATGGAGTCCTCATCAACATCAAAATTCTATGCTTACCTAATCATTTGCAT
GCTGTTCATCTCTTCAGCCACACCAATTCTTGGTTGTGGCTATTGTGGTG
GAGGAAAACCACCTAAAAAACACAAACCAGTTAAAAAACCAATTGTGAAA
CCACCAGTGACAACTCCACCCATCACAGTCCCTCCAACTTTACCTATTCC
ACCAATTGTGAAACCACCAATTTCCATACCACCAATAACAATTCCACCAA
CTCTACCTATTCCTCCAATTGTGAAACCACCAATAGCAATTCCACCAACT
TTGCCTATTCCTCCAATTGTACCAACTTTGCCACTACCTCCAATTGTGAA
ACCACCAATAACAATTCCACCAAGTTTACCAATCCCTCCAATTCCAGGAC
TCCCTCCAATTCCAGGAATCCCTCCAGTTCTTAACCCACCAAGCAAAGGA
GGAAGCACACCTTCTTCTCCAAAAAGTCCTTGTCCACCATCAACAACACC
TTCAACAAACACATGTCCAATTAACACTTTGAAATTAGGTGCTTGTGTTG
ATTTACTAGGTGGATTGGTTCACATTGGTGTTGGTGACCCTGTTGTCAAT
CAATGTTGTCCTGTTCTTCAAGGACTTGTTGAACTTGAAGCTGCTGCTTG
TCTTTGCACTACTCTTAAGCTTAAGCTTCTTAACCTTAACATTTATGTTC
CACTTGCTCTTCAGCTTCTTTTGGCTTGTGGAAAAACTCCTCCTCCTGGT
TACACTTGTTCTCTCTAA
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protein sequence of Cr_19530.1_PI489777_v1

>Cr_19530.1_PI489777_v1 ID=Cr_19530.1_PI489777_v1; Name=Cr_19530.1_PI489777_v1; organism=Cicer reticulatum; type=polypeptide; length=101bp
MESSSTSKFYAYLIICMLFISSATPILGCGYCGGLVHIGVGDPVVNQCCP
VLQGLVELEAAACLCTTLKLKLLNLNIYVPLALQLLLACGKTPPPGYTCS
L
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mRNA from alignment at Cr_LG_7:26687301..26688068-

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Cr_19530.1_PI489777_v1 ID=Cr_19530.1_PI489777_v1; Name=Cr_19530.1; organism=Cicer reticulatum; type=mRNA; length=768bp; location=Sequence derived from: Cr_LG_7:26687301..26688068- (Cicer reticulatum
ATGGAGTCCTCATCAACATCAAAATTCTATGCTTACCTAATCATTTGCAT
GCTGTTCATCTCTTCAGCCACACCAATTCTTGGTTGTGGCTATTGTGGTG
GAGGAAAACCACCTAAAAAACACAAACCAGTTAAAAAACCAATTGTGAAA
CCACCAGTGACAACTCCACCCATCACAGTCCCTCCAACTTTACCTATTCC
ACCAATTGTGAAACCACCAATTTCCATACCACCAATAACAATTCCACCAA
CTCTACCTATTCCTCCAATTGTGAAACCACCAATAGCAATTCCACCAACT
TTGCCTATTCCTCCAATTGTACCAACTTTGCCACTACCTCCAATTGTGAA
ACCACCAATAACAATTCCACCAAGTTTACCAATCCCTCCAATTCCAGGAC
TCCCTCCAATTCCAGGAATCCCTCCAGTTCTTAACCCACCAAGCAAAGGA
GGAAGCACACCTTCTTCTCCAAAAAGTCCTTGTCCACCATCAACAACACC
TTCAACAAACACATGTCCAATTAACACTTTGAAATTAGGTGCTTGTGTTG
ATTTACTAGGTGGATTGGTTCACATTGGTGTTGGTGACCCTGTTGTCAAT
CAATGTTGTCCTGTTCTTCAAGGACTTGTTGAACTTGAAGCTGCTGCTTG
TCTTTGCACTACTCTTAAGCTTAAGCTTCTTAACCTTAACATTTATGTTC
CACTTGCTCTTCAGCTTCTTTTGGCTTGTGGAAAAACTCCTCCTCCTGGT
TACACTTGTTCTCTCTAA
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Coding sequence (CDS) from alignment at Cr_LG_7:26687301..26688068-

>Cr_19530.1_PI489777_v1 ID=Cr_19530.1_PI489777_v1; Name=Cr_19530.1; organism=Cicer reticulatum; type=CDS; length=306bp; location=Sequence derived from: Cr_LG_7:26687301..26688068- (Cicer reticulatum
ATGGAGTCCTCATCAACATCAAAATTCTATGCTTACCTAATCATTTGCAT
GCTGTTCATCTCTTCAGCCACACCAATTCTTGGTTGTGGCTATTGTGGTG
GATTGGTTCACATTGGTGTTGGTGACCCTGTTGTCAATCAATGTTGTCCT
GTTCTTCAAGGACTTGTTGAACTTGAAGCTGCTGCTTGTCTTTGCACTAC
TCTTAAGCTTAAGCTTCTTAACCTTAACATTTATGTTCCACTTGCTCTTC
AGCTTCTTTTGGCTTGTGGAAAAACTCCTCCTCCTGGTTACACTTGTTCT
CTCTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR016140Bifunc_inhib/LTP/seed_store
IPR027923Hydrophob_seed_dom
IPR036312Bifun_inhib/LTP/seed_sf