Cr_19568.1, Cr_19568.1_PI489777_v1 (mRNA) Cicer reticulatum

Transcript Overview
NameCr_19568.1
Unique NameCr_19568.1_PI489777_v1
TypemRNA
OrganismCicer reticulatum (wild chickpea)
Sequence length844
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Cr_LG_7supercontigCr_LG_7:27009317..27010160 +Cicer reticulatum L. PI489777 genome v1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer reticulatum L. PI489777 genome v12016-08-26
BLAST: C. reticulatum PI489777 genome v1 Swissprot2019-05-21
InterProScan: C. reticulatum PI489777 genome v12019-05-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
crpsR712Pisum sativum Cameor genome v1aPisum sativum
crpsR714Pisum sativum Cameor genome v1aPisum sativum
crpsR728Pisum sativum Cameor genome v1aPisum sativum
crvuR795Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
crvuR856Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
crvuR857Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
crpvR838Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
crpvR903Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
crpvR904Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
cccrL0427Cajanus cajan Asha genome v1.0Cajanus cajan
cccrL0756Cajanus cajan Asha genome v1.0Cajanus cajan
ancrL0058Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancrL0059Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancrL0294Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancrL0415Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancrL0487Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascrL098Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascrL676Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascrL679Vigna angularis Jingnong 6 genome v1.1Vigna angularis
crzwsR695Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
crzwsR749Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
crzwsR781Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
crtifR744Vicia faba cv. Tiffany genome v1.0Vicia faba
crtifR755Vicia faba cv. Tiffany genome v1.0Vicia faba
crtifR757Vicia faba cv. Tiffany genome v1.0Vicia faba
crvfhR759Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
crvfhR768Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
crvfhR771Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
crvrvR719Vigna radiata cv. VC1973A genome v6.0Vigna radiata
crvrvR723Vigna radiata cv. VC1973A genome v6.0Vigna radiata
crvrvR730Vigna radiata cv. VC1973A genome v6.0Vigna radiata
crvssR843Vicia sativa cv. Studenica genome v1.0Vicia sativa
crvssR853Vicia sativa cv. Studenica genome v1.0Vicia sativa
crvuaR790Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
crvuaR833Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
crvuaR834Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cancrL820Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
Phvul.009G212000.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Phvul.003G172900.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-TanjilR_13359Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-KK1_003606Cajanus cajan Asha genome v1.0Cajanus cajan
rna-XM_004508353.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vfaba.Hedin2.R1.1g295080.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vigun09g051800.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Psat04G0120600-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
evm.model.Chr09.552Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigun03g364200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Psat4g034400.1Pisum sativum Cameor genome v1aPisum sativum
LR48_mrnaVigan04g027000Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-TanjilR_07020Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vfaba.Tiffany.R1.1g239800.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Psat01G0050100-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
rna-XM_014653805.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-XM_014645220.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-TanjilR_06975Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Cr_19568Cr_19568_PI489777_v1Cicer reticulatumgene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cr_19568.1:utr5p1Cr_19568.1:utr5p1_PI489777_v1Cicer reticulatumfive_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cr_19568.1:exon1Cr_19568.1:exon1_PI489777_v1Cicer reticulatumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cr_19568.1:cds1Cr_19568.1:cds1_PI489777_v1Cicer reticulatumCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cr_19568.1:utr3p1Cr_19568.1:utr3p1_PI489777_v1Cicer reticulatumthree_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Cr_19568.1_PI489777_v1Cr_19568.1_PI489777_v1Cicer reticulatumpolypeptide


Homology
The following BLAST results are available for this feature:
BLAST of Cr_19568.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. reticulatum PI489777 genome v1 Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterProScan: C. reticulatum PI489777 genome v1
Date Performed: 2019-05-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 47..67
NoneNo IPR availableGENE3D1.10.150.50coord: 1..70
e-value: 6.8E-8
score: 34.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 173..249
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 220..238
NoneNo IPR availablePANTHERPTHR33915:SF3coord: 1..267
NoneNo IPR availablePANTHERPTHR33915FAMILY NOT NAMEDcoord: 1..267
NoneNo IPR availableCDDcd09487SAM_superfamilycoord: 2..62
e-value: 4.00709E-7
score: 43.7673
IPR013761Sterile alpha motif/pointed domain superfamilySUPERFAMILY47769SAM/Pointed domaincoord: 19..62

Sequences
The following sequences are available for this feature:

mRNA sequence

>Cr_19568.1_PI489777_v1 ID=Cr_19568.1_PI489777_v1; Name=Cr_19568.1; organism=Cicer reticulatum; type=mRNA; length=844bp
CACAACCATATGGATTGGTTCTCATGGTTATCCAAAACTACTCTTGACCC
TTCCCTCATCTATGAATATGGCCTCATCTTTTCCCGCAACGAGCTTCAAT
TACAAGATGCAACTTATTTCAACCATGAGTTTCTTCAAAGCATGGGAATC
TCAATTGCCAAACATAGGCTAGAGATTCTCAAACTTGTCAAAAAAGAAGA
ACAAGAAGAATCACTTAAACCAAAAAACCTCTCTAGAGTCATCAAAAAGT
ATATCAAGAAATGCATGAACAAGTTTGTTTTTCGCGACGACGAAGATGTT
AATAAAAAGGACATGCCGGTACCAATGCTATTACATGAACAAAATTGGTA
TCAAGGGAAATGGAAAGGAGCATTGATGAAGAAACATGTGAGTGAGGAAC
ATGTTAAAGAAGAGAAGCACGTTTCAATGTATAGAAGCAGAACAATGCCA
TATTCAGGCCCATTAGATGGAAGACTAATGAATGAGAAAAAAATGGTGAA
CAATAAGGCTTTGAAGTTATCTGGGCCAATTGATGGAAGATATACTAATA
GAAGCCCATTAAGAAATAGGCCCGTTGATGGAAGATTCACAGGAACAACA
ACAATAAAGAGTCCAAGAGTATCTGGGCCTTTGGATCCAAGAATGTTGAT
GCTTGAGAATAGAAGTCCAAGAAGAATTACATCAAGGACTCCTGTTGAAA
CTGATAGCCCAATGGGTTATACTAGTCCTTATAATAAGCCCAAAGGTGAT
TTTGATTATGATGATGAACGCACACTATGGCCTACACTGTTTCAAGATCT
CAACCCAACTTGATTGTTTTTTTTTTGTCTTTGTTTTCTTGTAT
back to top

protein sequence of Cr_19568.1_PI489777_v1

>Cr_19568.1_PI489777_v1 ID=Cr_19568.1_PI489777_v1; Name=Cr_19568.1_PI489777_v1; organism=Cicer reticulatum; type=polypeptide; length=267bp
MDWFSWLSKTTLDPSLIYEYGLIFSRNELQLQDATYFNHEFLQSMGISIA
KHRLEILKLVKKEEQEESLKPKNLSRVIKKYIKKCMNKFVFRDDEDVNKK
DMPVPMLLHEQNWYQGKWKGALMKKHVSEEHVKEEKHVSMYRSRTMPYSG
PLDGRLMNEKKMVNNKALKLSGPIDGRYTNRSPLRNRPVDGRFTGTTTIK
SPRVSGPLDPRMLMLENRSPRRITSRTPVETDSPMGYTSPYNKPKGDFDY
DDERTLWPTLFQDLNPT
back to top

mRNA from alignment at Cr_LG_7:27009317..27010160+

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Cr_19568.1_PI489777_v1 ID=Cr_19568.1_PI489777_v1; Name=Cr_19568.1; organism=Cicer reticulatum; type=mRNA; length=844bp; location=Sequence derived from: Cr_LG_7:27009317..27010160+ (Cicer reticulatum
CACAACCATATGGATTGGTTCTCATGGTTATCCAAAACTACTCTTGACCC
TTCCCTCATCTATGAATATGGCCTCATCTTTTCCCGCAACGAGCTTCAAT
TACAAGATGCAACTTATTTCAACCATGAGTTTCTTCAAAGCATGGGAATC
TCAATTGCCAAACATAGGCTAGAGATTCTCAAACTTGTCAAAAAAGAAGA
ACAAGAAGAATCACTTAAACCAAAAAACCTCTCTAGAGTCATCAAAAAGT
ATATCAAGAAATGCATGAACAAGTTTGTTTTTCGCGACGACGAAGATGTT
AATAAAAAGGACATGCCGGTACCAATGCTATTACATGAACAAAATTGGTA
TCAAGGGAAATGGAAAGGAGCATTGATGAAGAAACATGTGAGTGAGGAAC
ATGTTAAAGAAGAGAAGCACGTTTCAATGTATAGAAGCAGAACAATGCCA
TATTCAGGCCCATTAGATGGAAGACTAATGAATGAGAAAAAAATGGTGAA
CAATAAGGCTTTGAAGTTATCTGGGCCAATTGATGGAAGATATACTAATA
GAAGCCCATTAAGAAATAGGCCCGTTGATGGAAGATTCACAGGAACAACA
ACAATAAAGAGTCCAAGAGTATCTGGGCCTTTGGATCCAAGAATGTTGAT
GCTTGAGAATAGAAGTCCAAGAAGAATTACATCAAGGACTCCTGTTGAAA
CTGATAGCCCAATGGGTTATACTAGTCCTTATAATAAGCCCAAAGGTGAT
TTTGATTATGATGATGAACGCACACTATGGCCTACACTGTTTCAAGATCT
CAACCCAACTTGATTGTTTTTTTTTTGTCTTTGTTTTCTTGTAT
back to top

Coding sequence (CDS) from alignment at Cr_LG_7:27009317..27010160+

>Cr_19568.1_PI489777_v1 ID=Cr_19568.1_PI489777_v1; Name=Cr_19568.1; organism=Cicer reticulatum; type=CDS; length=804bp; location=Sequence derived from: Cr_LG_7:27009317..27010160+ (Cicer reticulatum
ATGGATTGGTTCTCATGGTTATCCAAAACTACTCTTGACCCTTCCCTCAT
CTATGAATATGGCCTCATCTTTTCCCGCAACGAGCTTCAATTACAAGATG
CAACTTATTTCAACCATGAGTTTCTTCAAAGCATGGGAATCTCAATTGCC
AAACATAGGCTAGAGATTCTCAAACTTGTCAAAAAAGAAGAACAAGAAGA
ATCACTTAAACCAAAAAACCTCTCTAGAGTCATCAAAAAGTATATCAAGA
AATGCATGAACAAGTTTGTTTTTCGCGACGACGAAGATGTTAATAAAAAG
GACATGCCGGTACCAATGCTATTACATGAACAAAATTGGTATCAAGGGAA
ATGGAAAGGAGCATTGATGAAGAAACATGTGAGTGAGGAACATGTTAAAG
AAGAGAAGCACGTTTCAATGTATAGAAGCAGAACAATGCCATATTCAGGC
CCATTAGATGGAAGACTAATGAATGAGAAAAAAATGGTGAACAATAAGGC
TTTGAAGTTATCTGGGCCAATTGATGGAAGATATACTAATAGAAGCCCAT
TAAGAAATAGGCCCGTTGATGGAAGATTCACAGGAACAACAACAATAAAG
AGTCCAAGAGTATCTGGGCCTTTGGATCCAAGAATGTTGATGCTTGAGAA
TAGAAGTCCAAGAAGAATTACATCAAGGACTCCTGTTGAAACTGATAGCC
CAATGGGTTATACTAGTCCTTATAATAAGCCCAAAGGTGATTTTGATTAT
GATGATGAACGCACACTATGGCCTACACTGTTTCAAGATCTCAACCCAAC
TTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR013761SAM/pointed_sf