Cr_20810.1, Cr_20810.1_PI489777_v1 (mRNA) Cicer reticulatum

Transcript Overview
NameCr_20810.1
Unique NameCr_20810.1_PI489777_v1
TypemRNA
OrganismCicer reticulatum (wild chickpea)
Sequence length2227
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Cr_LG_8supercontigCr_LG_8:3850461..3852687 +Cicer reticulatum L. PI489777 genome v1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer reticulatum L. PI489777 genome v12016-08-26
BLAST: C. reticulatum PI489777 genome v1 Swissprot2019-05-21
InterProScan: C. reticulatum PI489777 genome v12019-05-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
crpsR763Pisum sativum Cameor genome v1aPisum sativum
crpsR765Pisum sativum Cameor genome v1aPisum sativum
crpsR800Pisum sativum Cameor genome v1aPisum sativum
crpsR807Pisum sativum Cameor genome v1aPisum sativum
crvuR868Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
crvuR889Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
crvuR927Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
crvuR928Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
crpvR914Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
crpvR941Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
crpvR987Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
crpvR992Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
cccrL0100Cajanus cajan Asha genome v1.0Cajanus cajan
cccrL0469Cajanus cajan Asha genome v1.0Cajanus cajan
cccrL1066Cajanus cajan Asha genome v1.0Cajanus cajan
ancrL0083Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancrL0084Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancrL0301Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancrL0420Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancrL0491Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancrL0492Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascrL687Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascrL688Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascrL903Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascrL905Vigna angularis Jingnong 6 genome v1.1Vigna angularis
crzwsR813Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
crzwsR836Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
crzwsR838Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
crzwsR843Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
crtifR829Vicia faba cv. Tiffany genome v1.0Vicia faba
crtifR867Vicia faba cv. Tiffany genome v1.0Vicia faba
crtifR878Vicia faba cv. Tiffany genome v1.0Vicia faba
crtifR883Vicia faba cv. Tiffany genome v1.0Vicia faba
crvfhR841Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
crvfhR875Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
crvfhR887Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
crvrvR767Vigna radiata cv. VC1973A genome v6.0Vigna radiata
crvrvR805Vigna radiata cv. VC1973A genome v6.0Vigna radiata
crvrvR808Vigna radiata cv. VC1973A genome v6.0Vigna radiata
crvrvR822Vigna radiata cv. VC1973A genome v6.0Vigna radiata
crvssR939Vicia sativa cv. Studenica genome v1.0Vicia sativa
crvssR973Vicia sativa cv. Studenica genome v1.0Vicia sativa
crvuaR842Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
crvuaR858Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
crvuaR904Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cancrL109Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cancrL449Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cancrL579Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cancrL845Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cancrL850Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
jg20316.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vfaba.Tiffany.R1.4g160960.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Psat04G0060700-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
evm.model.Chr03.1535Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vfaba.Hedin2.R1.4g209800.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-TanjilR_13482Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Phvul.003G134400.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
LR48_mrnaVigan07g142100Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-XM_014654539.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-KK1_003835Cajanus cajan Asha genome v1.0Cajanus cajan
rna-NM_001364987.1Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vigun03g394200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Cr_20810Cr_20810_PI489777_v1Cicer reticulatumgene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cr_20810.1:utr5p1Cr_20810.1:utr5p1_PI489777_v1Cicer reticulatumfive_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cr_20810.1:exon1Cr_20810.1:exon1_PI489777_v1Cicer reticulatumexon
Cr_20810.1:exon2Cr_20810.1:exon2_PI489777_v1Cicer reticulatumexon
Cr_20810.1:exon3Cr_20810.1:exon3_PI489777_v1Cicer reticulatumexon
Cr_20810.1:exon4Cr_20810.1:exon4_PI489777_v1Cicer reticulatumexon
Cr_20810.1:exon5Cr_20810.1:exon5_PI489777_v1Cicer reticulatumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cr_20810.1:cds1Cr_20810.1:cds1_PI489777_v1Cicer reticulatumCDS
Cr_20810.1:cds2Cr_20810.1:cds2_PI489777_v1Cicer reticulatumCDS
Cr_20810.1:cds3Cr_20810.1:cds3_PI489777_v1Cicer reticulatumCDS
Cr_20810.1:cds4Cr_20810.1:cds4_PI489777_v1Cicer reticulatumCDS
Cr_20810.1:cds5Cr_20810.1:cds5_PI489777_v1Cicer reticulatumCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cr_20810.1:utr3p1Cr_20810.1:utr3p1_PI489777_v1Cicer reticulatumthree_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Cr_20810.1_PI489777_v1Cr_20810.1_PI489777_v1Cicer reticulatumpolypeptide


Homology
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BLAST of Cr_20810.1 vs. DB:Swiss
Match: YWKD_BACSU (Uncharacterized protein YwkD OS=Bacillus subtilis (strain 168) OX=224308 GN=ywkD PE=4 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 8.110e-8
Identity = 36/124 (29.03%), Postives = 56/124 (45.16%), Query Frame = 1 
Query:  235 NVHHVGILCENLERSLDFYQNVLGLK-INEARPHDKLPYRGAWLWVGSEMIHLMELPNPDPLTGRPQHGGRDRHTCIAIRDVSKLKAILDKTGIPYTLSR----SGRPAIFTRDPDANALEFTQ 591
            ++HH+ I+C + E+S  FY + LG + I E    ++  Y+      GS +I L   P+P     RP+  G  RH    +  + K    L + GI     R    +G+   F  DPD   LE  +
Sbjct:    5 SIHHIAIICSDYEKSKAFYVHKLGFQVIQETYREERGSYKLDLSLNGSYVIELFSFPDPPERQTRPEAAGL-RHLAFTVGSLDKAVQELHEKGIETEPIRTDPLTGKRFTFFFDPDQLPLELYE 127
The following BLAST results are available for this feature:
BLAST of Cr_20810.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. reticulatum PI489777 genome v1 Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
YWKD_BACSU8.110e-829.03Uncharacterized protein YwkD OS=Bacillus subtilis ... [more]
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InterPro
Analysis Name: InterProScan: C. reticulatum PI489777 genome v1
Date Performed: 2019-05-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029068Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenaseGENE3D3.10.180.10coord: 73..199
e-value: 1.7E-21
score: 78.7
IPR029068Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenaseSUPERFAMILY54593Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenasecoord: 74..198
IPR004360Glyoxalase/fosfomycin resistance/dioxygenase domainPFAMPF00903Glyoxalasecoord: 80..195
e-value: 3.1E-10
score: 40.4
NoneNo IPR availablePANTHERPTHR21366:SF22coord: 31..200
NoneNo IPR availablePANTHERPTHR21366GLYOXALASE FAMILY PROTEINcoord: 31..200
NoneNo IPR availableCDDcd07245VOC_likecoord: 80..195
e-value: 5.42715E-43
score: 138.22
IPR037523Vicinal oxygen chelate (VOC) domainPROSITEPS51819VOCcoord: 79..198
score: 12.305

Sequences
The following sequences are available for this feature:

mRNA sequence

>Cr_20810.1_PI489777_v1 ID=Cr_20810.1_PI489777_v1; Name=Cr_20810.1; organism=Cicer reticulatum; type=mRNA; length=2227bp
AGACAGTATGTCCACTCATTAATTATTTATTAATTATCACTGACACTGTA
CTCTATCAACACTCACCTTACTCTATTGCTGCCATGGCGTCCCTTCTCAA
ACTACCTTCCTTTATCTCTCCTCTTCACCAAAACGTAATTGTCTAACTTG
TATTTCTTTCTACTACTTTATCAATCAATCTATTGTTTTATTAAACTTTT
CTTCTTCTCTTCTTGCAGTTGAATTATGTCAGCTTTTCGCCCATAATCAT
GAATGCGCAATCAAAATTTAACTGTGTTAGTGTAAGAAATGGGAGATGGA
ATGTTCCTAACATGACGATAAAAGCTCATACTGCTGTTGGAGGGGGTGTA
ATTCATAATGAATCGTTCTCATTCAATGAAGAAAGTGGTATCAAACTGTT
TTTTTTTTATTTTTTATTATAGTGACAAAAATTAATTTTGAATTAATTTT
TTACCAACGACTAATATTAATAACATGTCAAAATTAATTCTAAACCTTCA
AATAGGGTATTTTATGATAAATATTGGATAAATTGACAATAGCTTATGAA
GATAAGCCAGTTGAGAACTGTGAAAATACTTGAAAACTCTCATTCACTGT
TTGAGAGTTGCTGCCTATTAATCTTTCTTATCATTGCTATTGCTACTAGT
ATAATTTTTTCTGGTATTTTTCAGATTATGGGGTTGTTAATGTTCACCAT
GTTGGAATTTTATGTGAAAACCTAGAAAGATCACTTGACTTCTATCAAAA
CGTACTAGGTATGCCTGCAGCTCTTGAAACTAGATATAATATTTTTCTGT
GTTCTTAGAAGAAGTATATTGATTGATAATAACTAATCCAATTAAATGAG
ATATATACATATATAGGTCTGAAGATAAATGAAGCAAGGCCACATGATAA
GCTTCCATACAGGGGTGCATGGTTGTGGGTAGGGTCTGAGATGATTCATT
TGATGGAACTTCCAAATCCTGACCCTTTAACTGGACGACCTCAACATGGG
GGTCGAGATCGTCACACTTGTATTGCAATCCGAGATGTTTCTAAGCTCAA
AGCTATCCTTGATAAAACTGGTATCCCTTCTTCCATTCTCATAAAAATTA
ATAAGATATAACAAATACTAGTATATAGTAGTTTCAATATGCTAATGTCA
AATCGGTAAGTTATAGCATACACTCCTGGTGCATATTAATGTACTTTTTT
GTTTATATTTTATTGTGAAGGGGGTAGTTTAATAGTGTATTAACTTGTAT
AATGATTAATAATTGTCCCTAGTGTATAATATTTTTTTCATATACTACTT
CAACTATTGTTTGAGTTAATCTAATAGTTCGGTCTAGGGATAAAAAGACA
GATCTTGAATTTGTAGATTACAGGTTTAAGCCGTGCTCATTGAATTCAAA
TGTCTTTTCTATTTTAGACTAGAGCATCACCCCCCTTTCTTAGTATTATT
GTAAAATTTTGTTGATTTGAATGACGAAAGTAAATTGATTCCTACAATTT
TAGGGACTAATGCACGACGTACCTTGGGCTTGTGGTGTTAATTTTTTGGT
GGTTGCTCATCCACCTCTAATGTTTACTCAAAATGTGTAAAAAAATACTA
CTAAATTGGAACTTCCGATATGTCATTATTCCATTTTTCACCACCAAATC
CTAAGATCTGATAAATTGCTGAGAATTGTAGGGGACTGAAAGAGCATCTA
CCGATTTTTTTTGTTGAACATGGGCTTGTGGTGTTTCACACCATGATTTG
CAGCCTTTTAAATGGCTGGTTTTGTTTTTCCAAAGAAAATTATCTATTTT
ATGTCATTTATGTGTTTTTTCTATTTTGTTTGTAGGTATCCCCTACACAC
TTAGCCGTTCTGGAAGACCAGCAATCTTTACTCGTGACCCCGATGCCAAT
GCTCTAGAGTTCACACAAATAGATGAGTAATGTTTTTGGAGGTTATTAGG
ATGTCTACAGAACAAATGACTAGAAGATAGAAATAAATGTTTAGATGATT
GTATATATATGTAAAGGCTGAACAGAGTCGCTGAGATTCTTTATGAATAT
ATATATATAAAGCAACCAAAGATCCCCAAAAAATATCATTTCATTGGCAT
ATATAAGTTAAAAAGATTATTTCACATCGTGGTGTCAAACGTTATAAAAT
GGGCCCTTTTTAGTAGGAAGAAAACTTGGTATCCGAAGTTAGACCGTTAG
CTTTTGTACCCCATTTAAATTTGTACC
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protein sequence of Cr_20810.1_PI489777_v1

>Cr_20810.1_PI489777_v1 ID=Cr_20810.1_PI489777_v1; Name=Cr_20810.1_PI489777_v1; organism=Cicer reticulatum; type=polypeptide; length=200bp
MASLLKLPSFISPLHQNLNYVSFSPIIMNAQSKFNCVSVRNGRWNVPNMT
IKAHTAVGGGVIHNESFSFNEESDYGVVNVHHVGILCENLERSLDFYQNV
LGLKINEARPHDKLPYRGAWLWVGSEMIHLMELPNPDPLTGRPQHGGRDR
HTCIAIRDVSKLKAILDKTGIPYTLSRSGRPAIFTRDPDANALEFTQIDE
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mRNA from alignment at Cr_LG_8:3850461..3852687+

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Cr_20810.1_PI489777_v1 ID=Cr_20810.1_PI489777_v1; Name=Cr_20810.1; organism=Cicer reticulatum; type=mRNA; length=2227bp; location=Sequence derived from: Cr_LG_8:3850461..3852687+ (Cicer reticulatum
AGACAGTATGTCCACTCATTAATTATTTATTAATTATCACTGACACTGTA
CTCTATCAACACTCACCTTACTCTATTGCTGCCATGGCGTCCCTTCTCAA
ACTACCTTCCTTTATCTCTCCTCTTCACCAAAACGTAATTGTCTAACTTG
TATTTCTTTCTACTACTTTATCAATCAATCTATTGTTTTATTAAACTTTT
CTTCTTCTCTTCTTGCAGTTGAATTATGTCAGCTTTTCGCCCATAATCAT
GAATGCGCAATCAAAATTTAACTGTGTTAGTGTAAGAAATGGGAGATGGA
ATGTTCCTAACATGACGATAAAAGCTCATACTGCTGTTGGAGGGGGTGTA
ATTCATAATGAATCGTTCTCATTCAATGAAGAAAGTGGTATCAAACTGTT
TTTTTTTTATTTTTTATTATAGTGACAAAAATTAATTTTGAATTAATTTT
TTACCAACGACTAATATTAATAACATGTCAAAATTAATTCTAAACCTTCA
AATAGGGTATTTTATGATAAATATTGGATAAATTGACAATAGCTTATGAA
GATAAGCCAGTTGAGAACTGTGAAAATACTTGAAAACTCTCATTCACTGT
TTGAGAGTTGCTGCCTATTAATCTTTCTTATCATTGCTATTGCTACTAGT
ATAATTTTTTCTGGTATTTTTCAGATTATGGGGTTGTTAATGTTCACCAT
GTTGGAATTTTATGTGAAAACCTAGAAAGATCACTTGACTTCTATCAAAA
CGTACTAGGTATGCCTGCAGCTCTTGAAACTAGATATAATATTTTTCTGT
GTTCTTAGAAGAAGTATATTGATTGATAATAACTAATCCAATTAAATGAG
ATATATACATATATAGGTCTGAAGATAAATGAAGCAAGGCCACATGATAA
GCTTCCATACAGGGGTGCATGGTTGTGGGTAGGGTCTGAGATGATTCATT
TGATGGAACTTCCAAATCCTGACCCTTTAACTGGACGACCTCAACATGGG
GGTCGAGATCGTCACACTTGTATTGCAATCCGAGATGTTTCTAAGCTCAA
AGCTATCCTTGATAAAACTGGTATCCCTTCTTCCATTCTCATAAAAATTA
ATAAGATATAACAAATACTAGTATATAGTAGTTTCAATATGCTAATGTCA
AATCGGTAAGTTATAGCATACACTCCTGGTGCATATTAATGTACTTTTTT
GTTTATATTTTATTGTGAAGGGGGTAGTTTAATAGTGTATTAACTTGTAT
AATGATTAATAATTGTCCCTAGTGTATAATATTTTTTTCATATACTACTT
CAACTATTGTTTGAGTTAATCTAATAGTTCGGTCTAGGGATAAAAAGACA
GATCTTGAATTTGTAGATTACAGGTTTAAGCCGTGCTCATTGAATTCAAA
TGTCTTTTCTATTTTAGACTAGAGCATCACCCCCCTTTCTTAGTATTATT
GTAAAATTTTGTTGATTTGAATGACGAAAGTAAATTGATTCCTACAATTT
TAGGGACTAATGCACGACGTACCTTGGGCTTGTGGTGTTAATTTTTTGGT
GGTTGCTCATCCACCTCTAATGTTTACTCAAAATGTGTAAAAAAATACTA
CTAAATTGGAACTTCCGATATGTCATTATTCCATTTTTCACCACCAAATC
CTAAGATCTGATAAATTGCTGAGAATTGTAGGGGACTGAAAGAGCATCTA
CCGATTTTTTTTGTTGAACATGGGCTTGTGGTGTTTCACACCATGATTTG
CAGCCTTTTAAATGGCTGGTTTTGTTTTTCCAAAGAAAATTATCTATTTT
ATGTCATTTATGTGTTTTTTCTATTTTGTTTGTAGGTATCCCCTACACAC
TTAGCCGTTCTGGAAGACCAGCAATCTTTACTCGTGACCCCGATGCCAAT
GCTCTAGAGTTCACACAAATAGATGAGTAATGTTTTTGGAGGTTATTAGG
ATGTCTACAGAACAAATGACTAGAAGATAGAAATAAATGTTTAGATGATT
GTATATATATGTAAAGGCTGAACAGAGTCGCTGAGATTCTTTATGAATAT
ATATATATAAAGCAACCAAAGATCCCCAAAAAATATCATTTCATTGGCAT
ATATAAGTTAAAAAGATTATTTCACATCGTGGTGTCAAACGTTATAAAAT
GGGCCCTTTTTAGTAGGAAGAAAACTTGGTATCCGAAGTTAGACCGTTAG
CTTTTGTACCCCATTTAAATTTGTACC
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Coding sequence (CDS) from alignment at Cr_LG_8:3850461..3852687+

>Cr_20810.1_PI489777_v1 ID=Cr_20810.1_PI489777_v1; Name=Cr_20810.1; organism=Cicer reticulatum; type=CDS; length=603bp; location=Sequence derived from: Cr_LG_8:3850461..3852687+ (Cicer reticulatum
ATGGCGTCCCTTCTCAAACTACCTTCCTTTATCTCTCCTCTTCACCAAAA
CTTGAATTATGTCAGCTTTTCGCCCATAATCATGAATGCGCAATCAAAAT
TTAACTGTGTTAGTGTAAGAAATGGGAGATGGAATGTTCCTAACATGACG
ATAAAAGCTCATACTGCTGTTGGAGGGGGTGTAATTCATAATGAATCGTT
CTCATTCAATGAAGAAAGTGATTATGGGGTTGTTAATGTTCACCATGTTG
GAATTTTATGTGAAAACCTAGAAAGATCACTTGACTTCTATCAAAACGTA
CTAGGTCTGAAGATAAATGAAGCAAGGCCACATGATAAGCTTCCATACAG
GGGTGCATGGTTGTGGGTAGGGTCTGAGATGATTCATTTGATGGAACTTC
CAAATCCTGACCCTTTAACTGGACGACCTCAACATGGGGGTCGAGATCGT
CACACTTGTATTGCAATCCGAGATGTTTCTAAGCTCAAAGCTATCCTTGA
TAAAACTGGTATCCCCTACACACTTAGCCGTTCTGGAAGACCAGCAATCT
TTACTCGTGACCCCGATGCCAATGCTCTAGAGTTCACACAAATAGATGAG
TAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR029068Glyas_Bleomycin-R_OHBP_Dase
IPR004360Glyas_Fos-R_dOase_dom
IPR037523VOC